Wall clock time and date at job start Wed Apr 1 2020 05:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34949 * 126.03151 * 2 1 4 4 C 1.35319 * 107.74004 * 180.14628 * 3 2 1 5 5 C 1.50701 * 126.03715 * 179.87452 * 4 3 2 6 6 C 1.53010 * 109.47028 * 173.87917 * 5 4 3 7 7 C 1.52999 * 109.47270 * 53.88116 * 5 4 3 8 8 C 1.50699 * 109.47294 * 293.87561 * 5 4 3 9 9 O 1.21277 * 120.00120 * 354.56430 * 8 5 4 10 10 N 1.34775 * 120.00262 * 174.55875 * 8 5 4 11 11 C 1.46501 * 120.00556 * 180.02562 * 10 8 5 12 12 C 1.52993 * 109.47477 * 179.97438 * 11 10 8 13 13 C 1.50699 * 109.47183 * 179.97438 * 12 11 10 14 14 C 1.29455 * 117.69058 * 94.99775 * 13 12 11 15 15 C 1.50325 * 123.64967 * 181.13615 * 14 13 12 16 16 N 1.47112 * 109.10902 * 348.54716 * 15 14 13 17 17 C 1.36936 * 121.51241 * 223.15387 * 16 15 14 18 18 H 1.08008 * 119.99909 * 157.32075 * 17 16 15 19 19 C 1.38807 * 120.00278 * 337.32434 * 17 16 15 20 20 N 1.31621 * 119.99660 * 344.70515 * 19 17 16 21 21 Si 1.86800 * 120.00162 * 164.70205 * 19 17 16 22 22 H 1.48496 * 109.47117 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.46887 * 120.00233 * 21 19 17 24 24 H 1.48495 * 109.47323 * 240.00023 * 21 19 17 25 25 C 1.47340 * 117.11102 * 43.34380 * 16 15 14 26 26 C 1.49967 * 117.69615 * 274.98507 * 13 12 11 27 27 C 1.39866 * 107.92209 * 359.61604 * 4 3 2 28 28 N 1.30839 * 108.20595 * 0.23774 * 27 4 3 29 29 H 1.08993 * 109.47519 * 270.30568 * 1 2 3 30 30 H 1.09006 * 109.47367 * 30.31168 * 1 2 3 31 31 H 1.09008 * 109.47047 * 150.30572 * 1 2 3 32 32 H 1.07993 * 126.13473 * 359.97438 * 3 2 1 33 33 H 1.08998 * 109.46595 * 180.02562 * 6 5 4 34 34 H 1.08999 * 109.47090 * 299.99985 * 6 5 4 35 35 H 1.08999 * 109.47022 * 60.00316 * 6 5 4 36 36 H 1.09004 * 109.46588 * 299.99410 * 7 5 4 37 37 H 1.08999 * 109.47239 * 59.99776 * 7 5 4 38 38 H 1.09000 * 109.47118 * 180.02562 * 7 5 4 39 39 H 0.97005 * 119.99741 * 0.02562 * 10 8 5 40 40 H 1.08997 * 109.46954 * 59.99586 * 11 10 8 41 41 H 1.08997 * 109.46663 * 300.00375 * 11 10 8 42 42 H 1.09006 * 109.46835 * 60.00229 * 12 11 10 43 43 H 1.08994 * 109.47274 * 300.00353 * 12 11 10 44 44 H 1.07993 * 118.17717 * 0.86967 * 14 13 12 45 45 H 1.09007 * 109.51996 * 108.65436 * 15 14 13 46 46 H 1.09001 * 109.52793 * 228.84014 * 15 14 13 47 47 H 0.97008 * 119.99676 * 179.97438 * 20 19 17 48 48 H 1.08997 * 109.77869 * 178.43502 * 25 16 15 49 49 H 1.09001 * 109.78031 * 57.62508 * 25 16 15 50 50 H 1.09005 * 109.31298 * 281.28275 * 26 13 12 51 51 H 1.08992 * 109.31820 * 40.71466 * 26 13 12 52 52 H 1.08003 * 125.90025 * 180.26538 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2588 1.0913 0.0000 4 6 3.5436 0.6666 -0.0033 5 6 4.7679 1.5454 -0.0072 6 6 6.0190 0.6777 0.1437 7 6 4.6896 2.5343 1.1577 8 6 4.8371 2.3048 -1.3070 9 8 4.0339 2.0760 -2.1865 10 7 5.7914 3.2383 -1.4922 11 6 5.8584 3.9769 -2.7556 12 6 7.0227 4.9682 -2.7058 13 6 7.0919 5.7275 -4.0056 14 6 6.5017 6.8783 -4.0622 15 6 6.4654 7.7360 -5.2963 16 7 7.4116 7.1970 -6.2854 17 6 8.2386 8.0171 -7.0055 18 1 9.1482 7.6240 -7.4354 19 6 7.9082 9.3535 -7.1831 20 7 6.6843 9.7677 -6.9321 21 14 9.2004 10.5641 -7.7780 22 1 10.4867 9.8522 -7.9870 23 1 8.7574 11.1713 -9.0589 24 1 9.3841 11.6313 -6.7619 25 6 7.4284 5.7356 -6.4716 26 6 7.8398 5.0969 -5.1423 27 6 3.5346 -0.7320 0.0035 28 7 2.2891 -1.1328 0.0055 29 1 -0.3634 0.0055 1.0276 30 1 -0.3634 0.8872 -0.5187 31 1 -0.3633 -0.8928 -0.5091 32 1 1.9281 2.1194 -0.0004 33 1 6.9044 1.3134 0.1414 34 1 5.9690 0.1284 1.0839 35 1 6.0749 -0.0268 -0.6862 36 1 3.7983 3.1525 1.0501 37 1 4.6396 1.9850 2.0979 38 1 5.5749 3.1702 1.1546 39 1 6.4340 3.4211 -0.7889 40 1 4.9257 4.5198 -2.9089 41 1 6.0110 3.2776 -3.5776 42 1 7.9555 4.4256 -2.5523 43 1 6.8696 5.6674 -1.8838 44 1 6.0043 7.2405 -3.1747 45 1 5.4577 7.7336 -5.7120 46 1 6.7520 8.7559 -5.0397 47 1 6.4535 10.7017 -7.0559 48 1 8.1479 5.4707 -7.2463 49 1 6.4350 5.3884 -6.7557 50 1 8.9102 5.2368 -4.9912 51 1 7.6191 4.0300 -5.1713 52 1 4.4054 -1.3709 0.0071 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161610863.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:36 Heat of formation + Delta-G solvation = 72.920604 kcal Electronic energy + Delta-G solvation = -30022.943909 eV Core-core repulsion = 26024.977866 eV Total energy + Delta-G solvation = -3997.966043 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.65243 -39.83727 -37.90658 -35.76696 -35.34354 -33.55506 -33.03463 -31.33593 -29.95215 -29.73341 -28.60996 -27.79843 -26.66687 -25.47091 -23.87233 -22.91756 -22.42486 -21.23174 -21.02706 -20.89118 -19.36361 -17.59825 -17.44722 -16.72975 -16.19692 -15.68527 -15.58060 -15.40029 -15.00816 -14.63988 -14.37890 -14.20605 -14.17852 -13.91106 -13.59450 -13.43443 -13.26450 -13.02062 -12.93482 -12.72621 -12.59750 -12.49806 -12.44464 -12.17531 -11.96946 -11.78378 -11.57142 -11.41894 -11.32833 -10.97106 -10.89871 -10.78363 -10.72904 -10.27309 -10.23223 -9.80689 -9.73665 -9.60500 -9.49931 -9.05339 -8.65294 -8.59598 -7.89116 -6.72526 -5.76936 -3.14829 1.69782 2.29224 2.50537 2.63385 2.90138 3.32853 3.38422 3.45773 3.48035 4.16052 4.47136 4.50911 4.51821 4.61947 4.77014 4.81373 4.83177 5.00507 5.07497 5.14221 5.22854 5.23808 5.30085 5.36718 5.41335 5.42728 5.46783 5.58467 5.64513 5.67637 5.71480 5.78960 5.84015 5.96520 6.04558 6.08928 6.18727 6.24296 6.40297 6.42073 6.43861 6.57903 6.76665 6.81335 6.92637 7.26153 7.35926 7.42462 7.47682 7.48525 7.76515 7.91474 8.21784 8.40325 9.22258 9.85257 10.43618 11.33329 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023801 B = 0.001784 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.134609 B =15693.221887 C =16073.708145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.376 5.376 3 C 0.082 3.918 4 C -0.214 4.214 5 C 0.000 4.000 6 C -0.139 4.139 7 C -0.138 4.138 8 C 0.518 3.482 9 O -0.531 6.531 10 N -0.729 5.729 11 C 0.125 3.875 12 C -0.091 4.091 13 C -0.142 4.142 14 C -0.147 4.147 15 C 0.195 3.805 16 N -0.596 5.596 17 C -0.242 4.242 18 H 0.070 0.930 19 C -0.005 4.005 20 N -0.911 5.911 21 Si 0.905 3.095 22 H -0.278 1.278 23 H -0.291 1.291 24 H -0.290 1.290 25 C 0.142 3.858 26 C -0.091 4.091 27 C 0.059 3.941 28 N -0.301 5.301 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.168 0.832 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.397 0.603 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.091 0.909 45 H 0.037 0.963 46 H 0.094 0.906 47 H 0.253 0.747 48 H 0.056 0.944 49 H 0.023 0.977 50 H 0.062 0.938 51 H 0.053 0.947 52 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.525 -18.111 20.549 28.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.158 5.158 3 C -0.065 4.065 4 C -0.226 4.226 5 C -0.005 4.005 6 C -0.197 4.197 7 C -0.196 4.196 8 C 0.303 3.697 9 O -0.407 6.407 10 N -0.382 5.382 11 C 0.002 3.998 12 C -0.129 4.129 13 C -0.143 4.143 14 C -0.166 4.166 15 C 0.070 3.930 16 N -0.319 5.319 17 C -0.371 4.371 18 H 0.087 0.913 19 C -0.202 4.202 20 N -0.556 5.556 21 Si 0.735 3.265 22 H -0.203 1.203 23 H -0.218 1.218 24 H -0.216 1.216 25 C 0.016 3.984 26 C -0.130 4.130 27 C -0.127 4.127 28 N -0.122 5.122 29 H 0.092 0.908 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.185 0.815 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.231 0.769 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.109 0.891 45 H 0.055 0.945 46 H 0.112 0.888 47 H 0.063 0.937 48 H 0.074 0.926 49 H 0.041 0.959 50 H 0.080 0.920 51 H 0.071 0.929 52 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -8.135 -19.108 19.847 28.726 hybrid contribution 1.344 1.618 0.027 2.104 sum -6.791 -17.490 19.874 27.331 Atomic orbital electron populations 1.21851 0.74257 1.04650 1.03174 1.48378 1.06578 1.03809 1.57049 1.22151 0.90818 0.93146 1.00387 1.19342 0.92928 0.93283 1.17000 1.19001 0.93966 0.94353 0.93161 1.21851 0.95072 0.99793 1.02970 1.21902 1.02374 0.98136 0.97143 1.20554 0.80619 0.79508 0.89028 1.90713 1.40213 1.65462 1.44272 1.46121 1.33357 1.39875 1.18800 1.21408 0.99177 0.93967 0.85260 1.20900 0.97387 0.97380 0.97212 1.20228 1.02827 0.96463 0.94794 1.23113 0.97245 0.96084 1.00202 1.19758 0.92790 0.96201 0.84257 1.44189 1.44498 1.00202 1.43032 1.19247 0.99648 0.90917 1.27283 0.91274 1.24972 0.96022 0.98482 1.00737 1.70028 1.16526 1.15308 1.53781 0.86174 0.81096 0.81318 0.77932 1.20346 1.21796 1.21650 1.20956 0.98080 0.85712 0.93674 1.20753 0.99021 0.97642 0.95573 1.23701 0.95151 0.94221 0.99629 1.77330 1.01578 1.08335 1.24998 0.90838 0.89445 0.89293 0.81456 0.91751 0.91047 0.91731 0.92205 0.91237 0.91874 0.76858 0.91478 0.91421 0.91513 0.91595 0.89119 0.94531 0.88843 0.93718 0.92573 0.95889 0.91957 0.92893 0.80224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.61 11.47 59.85 0.69 1.29 16 2 N -0.38 -3.83 4.01 -68.16 -0.27 -4.11 16 3 C 0.08 0.82 10.40 -17.22 -0.18 0.65 16 4 C -0.21 -2.18 4.17 -105.05 -0.44 -2.62 16 5 C 0.00 0.00 0.80 -156.81 -0.13 -0.13 16 6 C -0.14 -0.90 7.40 37.16 0.28 -0.62 16 7 C -0.14 -0.87 8.14 37.16 0.30 -0.56 16 8 C 0.52 6.08 6.44 -10.99 -0.07 6.01 16 9 O -0.53 -8.68 15.71 5.56 0.09 -8.59 16 10 N -0.73 -7.44 5.39 -60.30 -0.32 -7.77 16 11 C 0.12 1.60 5.66 -4.04 -0.02 1.57 16 12 C -0.09 -1.16 5.32 -27.89 -0.15 -1.30 16 13 C -0.14 -2.44 5.11 -100.99 -0.52 -2.96 16 14 C -0.15 -2.84 9.47 -35.78 -0.34 -3.18 16 15 C 0.19 4.72 5.26 -5.04 -0.03 4.69 16 16 N -0.60 -15.18 3.01 -173.58 -0.52 -15.70 16 17 C -0.24 -6.68 9.72 -15.06 -0.15 -6.83 16 18 H 0.07 1.87 7.88 -52.48 -0.41 1.46 16 19 C 0.00 -0.13 5.03 -17.43 -0.09 -0.22 16 20 N -0.91 -26.49 10.97 55.49 0.61 -25.88 16 21 Si 0.90 21.82 29.58 -169.99 -5.03 16.80 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 C 0.14 3.03 6.57 -3.53 -0.02 3.01 16 26 C -0.09 -1.61 5.95 -28.18 -0.17 -1.78 16 27 C 0.06 0.62 10.99 -17.37 -0.19 0.43 16 28 N -0.30 -3.59 12.58 30.62 0.39 -3.21 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.50 8.14 -51.92 -0.42 0.07 16 32 H 0.17 1.39 8.00 -52.49 -0.42 0.97 16 33 H 0.06 0.33 7.96 -51.93 -0.41 -0.08 16 34 H 0.07 0.36 8.11 -51.93 -0.42 -0.06 16 35 H 0.06 0.47 7.75 -51.93 -0.40 0.07 16 36 H 0.06 0.40 7.85 -51.93 -0.41 -0.01 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 0.31 7.28 -51.93 -0.38 -0.07 16 39 H 0.40 2.90 7.39 -40.82 -0.30 2.60 16 40 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.07 0.97 8.09 -51.93 -0.42 0.55 16 42 H 0.07 0.76 8.11 -51.93 -0.42 0.34 16 43 H 0.07 0.77 7.78 -51.93 -0.40 0.37 16 44 H 0.09 1.55 7.73 -52.49 -0.41 1.14 16 45 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 46 H 0.09 2.51 6.30 -51.93 -0.33 2.18 16 47 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 48 H 0.06 1.16 7.96 -51.93 -0.41 0.74 16 49 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 50 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 51 H 0.05 0.82 8.08 -51.93 -0.42 0.40 16 52 H 0.18 1.38 7.35 -52.48 -0.39 1.00 16 LS Contribution 417.54 15.07 6.29 6.29 Total: -1.00 -35.20 417.54 -8.87 -44.07 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -8.87 Total: 0.64 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -1.22 Total: -2.55 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: -0.13 Total: -56.66 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.09 Total: -8.59 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -35.20 -8.87 -44.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161610863.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.989 kcal (2) G-P(sol) polarization free energy of solvation -35.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds