Wall clock time and date at job start Wed Apr 1 2020 05:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34949 * 126.03151 * 2 1 4 4 C 1.35319 * 107.74004 * 180.14628 * 3 2 1 5 5 C 1.50701 * 126.03715 * 179.87452 * 4 3 2 6 6 C 1.53010 * 109.47028 * 173.87917 * 5 4 3 7 7 C 1.52999 * 109.47270 * 53.88116 * 5 4 3 8 8 C 1.50699 * 109.47294 * 293.87561 * 5 4 3 9 9 O 1.21277 * 120.00120 * 354.56430 * 8 5 4 10 10 N 1.34775 * 120.00262 * 174.55875 * 8 5 4 11 11 C 1.46501 * 120.00556 * 180.02562 * 10 8 5 12 12 C 1.52993 * 109.47477 * 179.97438 * 11 10 8 13 13 C 1.50699 * 109.47183 * 179.97438 * 12 11 10 14 14 C 1.29455 * 117.69058 * 94.99775 * 13 12 11 15 15 C 1.50325 * 123.64967 * 181.13615 * 14 13 12 16 16 N 1.47112 * 109.10902 * 348.54716 * 15 14 13 17 17 C 1.36936 * 121.51241 * 223.15387 * 16 15 14 18 18 H 1.08008 * 119.99909 * 157.32075 * 17 16 15 19 19 C 1.38807 * 120.00278 * 337.32434 * 17 16 15 20 20 N 1.31621 * 119.99660 * 344.70515 * 19 17 16 21 21 Si 1.86800 * 120.00162 * 164.70205 * 19 17 16 22 22 H 1.48496 * 109.47117 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.46887 * 120.00233 * 21 19 17 24 24 H 1.48495 * 109.47323 * 240.00023 * 21 19 17 25 25 C 1.47340 * 117.11102 * 43.34380 * 16 15 14 26 26 C 1.49967 * 117.69615 * 274.98507 * 13 12 11 27 27 C 1.39866 * 107.92209 * 359.61604 * 4 3 2 28 28 N 1.30839 * 108.20595 * 0.23774 * 27 4 3 29 29 H 1.08993 * 109.47519 * 270.30568 * 1 2 3 30 30 H 1.09006 * 109.47367 * 30.31168 * 1 2 3 31 31 H 1.09008 * 109.47047 * 150.30572 * 1 2 3 32 32 H 1.07993 * 126.13473 * 359.97438 * 3 2 1 33 33 H 1.08998 * 109.46595 * 180.02562 * 6 5 4 34 34 H 1.08999 * 109.47090 * 299.99985 * 6 5 4 35 35 H 1.08999 * 109.47022 * 60.00316 * 6 5 4 36 36 H 1.09004 * 109.46588 * 299.99410 * 7 5 4 37 37 H 1.08999 * 109.47239 * 59.99776 * 7 5 4 38 38 H 1.09000 * 109.47118 * 180.02562 * 7 5 4 39 39 H 0.97005 * 119.99741 * 0.02562 * 10 8 5 40 40 H 1.08997 * 109.46954 * 59.99586 * 11 10 8 41 41 H 1.08997 * 109.46663 * 300.00375 * 11 10 8 42 42 H 1.09006 * 109.46835 * 60.00229 * 12 11 10 43 43 H 1.08994 * 109.47274 * 300.00353 * 12 11 10 44 44 H 1.07993 * 118.17717 * 0.86967 * 14 13 12 45 45 H 1.09007 * 109.51996 * 108.65436 * 15 14 13 46 46 H 1.09001 * 109.52793 * 228.84014 * 15 14 13 47 47 H 0.97008 * 119.99676 * 179.97438 * 20 19 17 48 48 H 1.08997 * 109.77869 * 178.43502 * 25 16 15 49 49 H 1.09001 * 109.78031 * 57.62508 * 25 16 15 50 50 H 1.09005 * 109.31298 * 281.28275 * 26 13 12 51 51 H 1.08992 * 109.31820 * 40.71466 * 26 13 12 52 52 H 1.08003 * 125.90025 * 180.26538 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2588 1.0913 0.0000 4 6 3.5436 0.6666 -0.0033 5 6 4.7679 1.5454 -0.0072 6 6 6.0190 0.6777 0.1437 7 6 4.6896 2.5343 1.1577 8 6 4.8371 2.3048 -1.3070 9 8 4.0339 2.0760 -2.1865 10 7 5.7914 3.2383 -1.4922 11 6 5.8584 3.9769 -2.7556 12 6 7.0227 4.9682 -2.7058 13 6 7.0919 5.7275 -4.0056 14 6 6.5017 6.8783 -4.0622 15 6 6.4654 7.7360 -5.2963 16 7 7.4116 7.1970 -6.2854 17 6 8.2386 8.0171 -7.0055 18 1 9.1482 7.6240 -7.4354 19 6 7.9082 9.3535 -7.1831 20 7 6.6843 9.7677 -6.9321 21 14 9.2004 10.5641 -7.7780 22 1 10.4867 9.8522 -7.9870 23 1 8.7574 11.1713 -9.0589 24 1 9.3841 11.6313 -6.7619 25 6 7.4284 5.7356 -6.4716 26 6 7.8398 5.0969 -5.1423 27 6 3.5346 -0.7320 0.0035 28 7 2.2891 -1.1328 0.0055 29 1 -0.3634 0.0055 1.0276 30 1 -0.3634 0.8872 -0.5187 31 1 -0.3633 -0.8928 -0.5091 32 1 1.9281 2.1194 -0.0004 33 1 6.9044 1.3134 0.1414 34 1 5.9690 0.1284 1.0839 35 1 6.0749 -0.0268 -0.6862 36 1 3.7983 3.1525 1.0501 37 1 4.6396 1.9850 2.0979 38 1 5.5749 3.1702 1.1546 39 1 6.4340 3.4211 -0.7889 40 1 4.9257 4.5198 -2.9089 41 1 6.0110 3.2776 -3.5776 42 1 7.9555 4.4256 -2.5523 43 1 6.8696 5.6674 -1.8838 44 1 6.0043 7.2405 -3.1747 45 1 5.4577 7.7336 -5.7120 46 1 6.7520 8.7559 -5.0397 47 1 6.4535 10.7017 -7.0559 48 1 8.1479 5.4707 -7.2463 49 1 6.4350 5.3884 -6.7557 50 1 8.9102 5.2368 -4.9912 51 1 7.6191 4.0300 -5.1713 52 1 4.4054 -1.3709 0.0071 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161610863.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:35 Heat of formation + Delta-G solvation = 50.489525 kcal Electronic energy + Delta-G solvation = -30023.916594 eV Core-core repulsion = 26024.977866 eV Total energy + Delta-G solvation = -3998.938728 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.37393 -40.73499 -39.45757 -36.76030 -36.38331 -35.04199 -33.76520 -33.05635 -31.47673 -30.65441 -29.96386 -28.31431 -27.28655 -27.09123 -25.01616 -24.36540 -23.71666 -22.47604 -22.02865 -21.74933 -20.19232 -19.44679 -18.17572 -17.70074 -17.36327 -17.04797 -16.76497 -16.40568 -16.23395 -15.77404 -15.45286 -15.30605 -15.25466 -15.02169 -14.87854 -14.80848 -14.31877 -14.06453 -13.83579 -13.56104 -13.45672 -13.36950 -13.27962 -13.16533 -13.14309 -12.90278 -12.81248 -12.79370 -12.59732 -12.38213 -12.29826 -12.11882 -11.93959 -11.84910 -11.65595 -11.49977 -11.21783 -10.69730 -10.62620 -10.34334 -10.01966 -9.46861 -9.30592 -8.76707 -7.87640 -5.29105 0.96646 1.43671 1.46749 1.47395 1.58563 1.68216 1.74389 1.78942 2.45010 2.51091 3.28904 3.53692 3.66802 3.86888 3.88133 3.99269 4.01348 4.13720 4.17914 4.18623 4.28171 4.33138 4.41183 4.43228 4.56113 4.61458 4.65292 4.71987 4.80414 4.82226 4.87387 4.88426 4.92870 4.98074 5.00442 5.09104 5.13364 5.15945 5.19745 5.25044 5.34645 5.43533 5.43798 5.51304 5.51854 5.60984 5.71452 5.90191 6.12023 6.30607 6.33820 6.67344 6.74545 7.13117 7.37302 7.83233 8.37935 9.20975 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023801 B = 0.001784 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.134609 B =15693.221887 C =16073.708145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.383 5.383 3 C 0.070 3.930 4 C -0.226 4.226 5 C 0.007 3.993 6 C -0.139 4.139 7 C -0.136 4.136 8 C 0.516 3.484 9 O -0.583 6.583 10 N -0.714 5.714 11 C 0.134 3.866 12 C -0.078 4.078 13 C -0.120 4.120 14 C -0.175 4.175 15 C 0.204 3.796 16 N -0.615 5.615 17 C -0.254 4.254 18 H 0.073 0.927 19 C -0.060 4.060 20 N -0.943 5.943 21 Si 0.972 3.028 22 H -0.265 1.265 23 H -0.294 1.294 24 H -0.290 1.290 25 C 0.134 3.866 26 C -0.087 4.087 27 C 0.051 3.949 28 N -0.336 5.336 29 H 0.091 0.909 30 H 0.103 0.897 31 H 0.089 0.911 32 H 0.180 0.820 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.416 0.584 40 H 0.046 0.954 41 H 0.053 0.947 42 H 0.093 0.907 43 H 0.085 0.915 44 H 0.114 0.886 45 H 0.000 1.000 46 H 0.059 0.941 47 H 0.249 0.751 48 H 0.059 0.941 49 H 0.015 0.985 50 H 0.070 0.930 51 H 0.084 0.916 52 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.644 -19.246 22.871 30.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.165 5.165 3 C -0.077 4.077 4 C -0.238 4.238 5 C 0.003 3.997 6 C -0.196 4.196 7 C -0.193 4.193 8 C 0.303 3.697 9 O -0.462 6.462 10 N -0.366 5.366 11 C 0.010 3.990 12 C -0.115 4.115 13 C -0.121 4.121 14 C -0.194 4.194 15 C 0.079 3.921 16 N -0.339 5.339 17 C -0.384 4.384 18 H 0.090 0.910 19 C -0.254 4.254 20 N -0.590 5.590 21 Si 0.800 3.200 22 H -0.189 1.189 23 H -0.221 1.221 24 H -0.216 1.216 25 C 0.009 3.991 26 C -0.125 4.125 27 C -0.134 4.134 28 N -0.158 5.158 29 H 0.110 0.890 30 H 0.121 0.879 31 H 0.107 0.893 32 H 0.197 0.803 33 H 0.101 0.899 34 H 0.107 0.893 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.253 0.747 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.112 0.888 43 H 0.104 0.896 44 H 0.132 0.868 45 H 0.018 0.982 46 H 0.077 0.923 47 H 0.058 0.942 48 H 0.077 0.923 49 H 0.033 0.967 50 H 0.088 0.912 51 H 0.103 0.897 52 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -6.224 -20.271 22.208 30.706 hybrid contribution 0.710 1.883 -0.757 2.150 sum -5.514 -18.388 21.451 28.787 Atomic orbital electron populations 1.22140 0.72457 1.05455 1.04647 1.48713 1.07780 1.03398 1.56595 1.22499 0.91265 0.93740 1.00243 1.19652 0.93679 0.93480 1.16965 1.19026 0.94283 0.94487 0.91915 1.21897 0.94534 0.99717 1.03458 1.21920 1.03033 0.97848 0.96498 1.21192 0.79721 0.79194 0.89550 1.90696 1.42225 1.67056 1.46250 1.45911 1.33413 1.38967 1.18352 1.21107 0.98196 0.93594 0.86107 1.20799 0.98479 0.97326 0.94909 1.20593 0.99567 0.95451 0.96507 1.22818 1.00665 0.96947 0.99006 1.19412 0.90652 0.95838 0.86155 1.44482 1.44352 1.01781 1.43328 1.19597 1.00063 0.91642 1.27104 0.90976 1.25790 0.97869 1.00194 1.01575 1.70209 1.18362 1.15244 1.55183 0.85126 0.79056 0.78846 0.76955 1.18946 1.22071 1.21632 1.21155 0.97903 0.83806 0.96242 1.20709 0.99382 0.99051 0.93401 1.24101 0.95389 0.94841 0.99082 1.77255 1.02529 1.09690 1.26371 0.89029 0.87900 0.89255 0.80289 0.89916 0.89312 0.92826 0.92856 0.90066 0.89934 0.74673 0.93598 0.92853 0.88810 0.89640 0.86843 0.98192 0.92328 0.94177 0.92279 0.96663 0.91209 0.89748 0.78334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.05 11.47 127.77 1.47 2.52 16 2 N -0.38 -7.65 4.01 -369.56 -1.48 -9.13 16 3 C 0.07 1.36 10.40 83.54 0.87 2.23 16 4 C -0.23 -4.34 4.17 -20.14 -0.08 -4.43 16 5 C 0.01 0.11 0.80 -53.67 -0.04 0.06 16 6 C -0.14 -1.35 7.40 71.99 0.53 -0.81 16 7 C -0.14 -1.28 8.14 71.98 0.59 -0.69 16 8 C 0.52 11.18 6.44 87.66 0.56 11.75 16 9 O -0.58 -18.83 15.71 -3.02 -0.05 -18.88 16 10 N -0.71 -12.38 5.39 -463.08 -2.49 -14.87 16 11 C 0.13 3.10 5.66 86.38 0.49 3.58 16 12 C -0.08 -1.66 5.32 29.85 0.16 -1.50 16 13 C -0.12 -3.86 5.11 -15.14 -0.08 -3.94 16 14 C -0.18 -6.71 9.47 27.11 0.26 -6.45 16 15 C 0.20 10.32 5.26 85.40 0.45 10.77 16 16 N -0.62 -32.01 3.01 -703.09 -2.12 -34.13 16 17 C -0.25 -14.28 9.72 84.03 0.82 -13.47 16 18 H 0.07 3.91 7.88 -2.91 -0.02 3.89 16 19 C -0.06 -3.42 5.03 84.86 0.43 -3.00 16 20 N -0.94 -56.97 10.97 21.65 0.24 -56.73 16 21 Si 0.97 45.53 29.58 68.60 2.03 47.56 16 22 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 23 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 24 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 25 C 0.13 5.70 6.57 86.25 0.57 6.27 16 26 C -0.09 -2.87 5.95 29.65 0.18 -2.70 16 27 C 0.05 1.03 10.99 85.24 0.94 1.96 16 28 N -0.34 -7.95 12.58 -57.02 -0.72 -8.67 16 29 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.10 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.18 2.86 8.00 -2.91 -0.02 2.83 16 33 H 0.08 0.50 7.96 -2.39 -0.02 0.48 16 34 H 0.09 0.58 8.11 -2.39 -0.02 0.56 16 35 H 0.05 0.65 7.75 -2.39 -0.02 0.63 16 36 H 0.05 0.58 7.85 -2.38 -0.02 0.57 16 37 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.08 0.45 7.28 -2.39 -0.02 0.44 16 39 H 0.42 4.19 7.39 -92.70 -0.68 3.51 16 40 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.05 1.41 8.09 -2.39 -0.02 1.39 16 42 H 0.09 1.62 8.11 -2.38 -0.02 1.60 16 43 H 0.09 1.60 7.78 -2.39 -0.02 1.58 16 44 H 0.11 3.76 7.73 -2.91 -0.02 3.74 16 45 H 0.00 0.02 8.14 -2.38 -0.02 0.00 16 46 H 0.06 3.31 6.30 -2.39 -0.02 3.30 16 47 H 0.25 14.51 8.31 -92.70 -0.77 13.74 16 48 H 0.06 2.42 7.96 -2.39 -0.02 2.40 16 49 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 50 H 0.07 2.27 8.14 -2.38 -0.02 2.26 16 51 H 0.08 2.31 8.08 -2.39 -0.02 2.30 16 52 H 0.20 2.82 7.35 -2.91 -0.02 2.80 16 Total: -1.00 -80.32 417.54 3.71 -76.60 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 0.22 Total: 16.07 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: 8.09 Total: 2.17 kcal Atomic # 7 Polarization: -116.95 SS G_CDS: -6.58 Total: -123.52 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.05 Total: -18.88 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -80.32 3.71 -76.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161610863.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.093 kcal (2) G-P(sol) polarization free energy of solvation -80.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds