Wall clock time and date at job start Wed Apr 1 2020 04:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46594 * 2 1 4 4 C 1.50699 * 109.47488 * 119.99788 * 2 1 3 5 5 C 1.38622 * 120.32225 * 119.97591 * 4 2 1 6 6 C 1.38591 * 118.48894 * 180.02562 * 5 4 2 7 7 C 1.39309 * 119.05688 * 0.02562 * 6 5 4 8 8 C 1.48173 * 119.72058 * 180.02562 * 7 6 5 9 9 O 1.21516 * 119.99893 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99920 * 179.97438 * 8 7 6 11 11 C 1.46498 * 119.99953 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.46937 * 180.02562 * 11 10 8 13 13 N 1.46903 * 109.46726 * 180.02562 * 12 11 10 14 14 C 1.46898 * 111.00236 * 294.30004 * 13 12 11 15 15 C 1.53234 * 109.34085 * 172.75132 * 14 13 12 16 16 N 1.47072 * 108.52308 * 53.82787 * 15 14 13 17 17 C 1.36938 * 120.87962 * 128.83716 * 16 15 14 18 18 H 1.08008 * 120.00310 * 206.56070 * 17 16 15 19 19 C 1.38817 * 120.00262 * 26.55634 * 17 16 15 20 20 N 1.31616 * 119.99413 * 17.03220 * 19 17 16 21 21 Si 1.86800 * 120.00243 * 197.02842 * 19 17 16 22 22 H 1.48498 * 109.46979 * 0.02562 * 21 19 17 23 23 H 1.48495 * 109.47086 * 120.00487 * 21 19 17 24 24 H 1.48503 * 109.46914 * 240.00358 * 21 19 17 25 25 C 1.47075 * 118.24148 * 308.81880 * 16 15 14 26 26 C 1.46901 * 110.99833 * 170.00065 * 13 12 11 27 27 N 1.32710 * 120.55317 * 359.97438 * 7 6 5 28 28 C 1.31523 * 121.64610 * 0.02562 * 27 7 6 29 29 H 1.08996 * 109.46675 * 299.99766 * 1 2 3 30 30 H 1.08995 * 109.47186 * 59.99968 * 1 2 3 31 31 H 1.09001 * 109.46589 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47133 * 240.00491 * 2 1 3 33 33 H 1.08998 * 109.46656 * 179.97438 * 3 2 1 34 34 H 1.08995 * 109.47380 * 299.99913 * 3 2 1 35 35 H 1.08994 * 109.46979 * 60.00397 * 3 2 1 36 36 H 1.08000 * 120.75571 * 0.05002 * 5 4 2 37 37 H 1.08005 * 120.47046 * 179.97438 * 6 5 4 38 38 H 0.97002 * 120.00136 * 359.97438 * 10 8 7 39 39 H 1.08999 * 109.47645 * 300.00497 * 11 10 8 40 40 H 1.09007 * 109.46682 * 60.00496 * 11 10 8 41 41 H 1.09000 * 109.47108 * 299.99703 * 12 11 10 42 42 H 1.08999 * 109.47316 * 60.00426 * 12 11 10 43 43 H 1.09001 * 109.49125 * 292.71352 * 14 13 12 44 44 H 1.09000 * 109.49239 * 52.78564 * 14 13 12 45 45 H 1.08999 * 109.62693 * 294.11488 * 15 14 13 46 46 H 1.09004 * 109.62713 * 173.54443 * 15 14 13 47 47 H 0.97007 * 119.99897 * 179.97438 * 20 19 17 48 48 H 1.08999 * 109.62525 * 291.47229 * 25 16 15 49 49 H 1.09006 * 109.79070 * 170.98992 * 25 16 15 50 50 H 1.09001 * 109.49411 * 307.21069 * 26 13 12 51 51 H 1.09000 * 109.49311 * 67.28905 * 26 13 12 52 52 H 1.08000 * 119.54501 * 180.02562 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0325 -0.7103 1.2304 5 6 2.8294 -1.8382 1.1110 6 6 3.2699 -2.4619 2.2676 7 6 2.8980 -1.9368 3.5032 8 6 3.3611 -2.5915 4.7491 9 8 4.0619 -3.5825 4.6904 10 7 3.0051 -2.0879 5.9475 11 6 3.4625 -2.7355 7.1794 12 6 2.9211 -1.9708 8.3889 13 7 3.3803 -2.6199 9.6242 14 6 2.7988 -3.9619 9.7613 15 6 3.4381 -4.6721 10.9591 16 7 3.2986 -3.8100 12.1425 17 6 2.7772 -4.2987 13.3106 18 1 2.2859 -3.6317 14.0036 19 6 2.8800 -5.6516 13.6041 20 7 3.7458 -6.4016 12.9560 21 14 1.7895 -6.4076 14.9189 22 1 0.9085 -5.3596 15.4940 23 1 0.9558 -7.4780 14.3152 24 1 2.6370 -6.9863 15.9923 25 6 3.7342 -2.4091 12.0382 26 6 3.0831 -1.7879 10.7978 27 7 2.1332 -0.8545 3.5736 28 6 1.7014 -0.2431 2.4921 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 3.1012 -2.2220 0.1388 37 1 3.8920 -3.3431 2.2118 38 1 2.4459 -1.2966 5.9943 39 1 3.0985 -3.7626 7.2067 40 1 4.5522 -2.7353 7.2069 41 1 3.2848 -0.9436 8.3618 42 1 1.8315 -1.9713 8.3612 43 1 1.7236 -3.8779 9.9196 44 1 2.9894 -4.5353 8.8541 45 1 4.4946 -4.8499 10.7582 46 1 2.9314 -5.6209 11.1354 47 1 3.8180 -7.3469 13.1613 48 1 4.8191 -2.3693 11.9410 49 1 3.4259 -1.8595 12.9277 50 1 3.4801 -0.7847 10.6425 51 1 2.0040 -1.7342 10.9418 52 1 1.0810 0.6356 2.5889 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265264474.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:49 Heat of formation + Delta-G solvation = 22.732419 kcal Electronic energy + Delta-G solvation = -29429.681595 eV Core-core repulsion = 25429.539228 eV Total energy + Delta-G solvation = -4000.142366 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 2.94 seconds Orbital eigenvalues (eV) -41.07174 -39.38863 -38.15724 -36.33134 -35.44548 -33.97585 -32.70954 -31.51170 -30.81126 -29.91242 -28.78498 -27.71169 -26.12242 -24.77686 -24.26475 -23.22252 -22.55744 -21.46378 -21.13139 -20.67586 -19.09077 -18.30312 -17.37437 -16.76940 -16.04685 -15.76119 -15.67471 -15.27182 -14.94541 -14.77535 -14.67669 -14.34078 -14.32052 -14.15185 -13.74543 -13.62919 -13.43750 -13.40167 -13.26685 -13.22322 -12.89474 -12.73921 -12.47684 -11.79059 -11.67890 -11.61199 -11.47612 -11.40518 -11.26796 -11.03932 -10.73722 -10.49907 -10.40105 -10.29201 -10.26868 -10.02859 -9.85467 -9.72656 -9.58381 -9.43764 -9.03578 -8.48540 -7.85641 -6.63999 -5.75222 -3.16367 0.26915 0.80628 2.51517 2.90680 3.39077 3.46772 3.48944 3.53029 3.75388 4.07018 4.18340 4.38848 4.41906 4.52442 4.58150 4.60387 4.66926 4.79081 4.98892 5.04199 5.06912 5.20380 5.23270 5.26592 5.32500 5.42195 5.44254 5.45919 5.53560 5.57094 5.61969 5.66218 5.83948 5.85613 5.93768 5.98648 6.08600 6.14218 6.15503 6.23725 6.34326 6.37871 6.56610 6.71652 6.95300 7.20744 7.27245 7.49199 7.58100 7.66983 7.72492 7.84267 8.05880 8.46252 9.24055 9.87574 10.46099 11.33610 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.025065 B = 0.001619 C = 0.001596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.834671 B =17290.346606 C =17537.435690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.055 4.055 3 C -0.147 4.147 4 C -0.109 4.109 5 C -0.081 4.081 6 C -0.107 4.107 7 C 0.076 3.924 8 C 0.569 3.431 9 O -0.531 6.531 10 N -0.707 5.707 11 C 0.119 3.881 12 C 0.045 3.955 13 N -0.529 5.529 14 C 0.030 3.970 15 C 0.178 3.822 16 N -0.595 5.595 17 C -0.252 4.252 18 H 0.066 0.934 19 C 0.001 3.999 20 N -0.902 5.902 21 Si 0.902 3.098 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.290 1.290 25 C 0.148 3.852 26 C 0.046 3.954 27 N -0.456 5.456 28 C 0.102 3.898 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.082 0.918 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.141 0.859 37 H 0.150 0.850 38 H 0.409 0.591 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.033 0.967 43 H 0.026 0.974 44 H 0.064 0.936 45 H 0.028 0.972 46 H 0.089 0.911 47 H 0.253 0.747 48 H 0.026 0.974 49 H 0.056 0.944 50 H 0.062 0.938 51 H 0.028 0.972 52 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.307 15.708 -28.702 33.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.074 4.074 3 C -0.204 4.204 4 C -0.111 4.111 5 C -0.107 4.107 6 C -0.127 4.127 7 C -0.062 4.062 8 C 0.353 3.647 9 O -0.407 6.407 10 N -0.359 5.359 11 C -0.004 4.004 12 C -0.084 4.084 13 N -0.254 5.254 14 C -0.098 4.098 15 C 0.052 3.948 16 N -0.319 5.319 17 C -0.381 4.381 18 H 0.084 0.916 19 C -0.198 4.198 20 N -0.547 5.547 21 Si 0.732 3.268 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.217 1.217 25 C 0.022 3.978 26 C -0.083 4.083 27 N -0.166 5.166 28 C -0.058 4.058 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.159 0.841 37 H 0.167 0.833 38 H 0.244 0.756 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.092 0.908 42 H 0.051 0.949 43 H 0.044 0.956 44 H 0.082 0.918 45 H 0.046 0.954 46 H 0.107 0.893 47 H 0.063 0.937 48 H 0.044 0.956 49 H 0.074 0.926 50 H 0.080 0.920 51 H 0.047 0.953 52 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -4.467 15.045 -27.807 31.930 hybrid contribution -1.464 -0.304 -0.150 1.503 sum -5.932 14.741 -27.957 32.157 Atomic orbital electron populations 1.21885 0.93704 1.02363 1.02462 1.20140 0.96362 0.96253 0.94616 1.21883 1.01421 0.94631 1.02459 1.21138 0.97272 0.95987 0.96711 1.21553 0.95727 0.94346 0.99090 1.22156 0.98520 1.00485 0.91582 1.21183 0.97375 0.93738 0.93930 1.17829 0.80403 0.83621 0.82880 1.90817 1.37632 1.25317 1.86899 1.45789 1.52726 1.31992 1.05346 1.21462 1.00657 0.96905 0.81397 1.22190 0.97514 0.98196 0.90488 1.61877 1.59289 1.03500 1.00770 1.23010 0.96717 0.89102 1.01016 1.20869 0.97879 0.93751 0.82335 1.44128 1.72539 1.05845 1.09370 1.19236 1.28959 0.92421 0.97512 0.91607 1.25028 0.98134 0.97914 0.98697 1.70042 1.34413 1.06134 1.44112 0.86232 0.80237 0.79132 0.81231 1.20341 1.21611 1.21718 1.20972 0.96258 0.87021 0.93586 1.22625 0.98389 0.95499 0.91795 1.67555 1.08575 1.07059 1.33460 1.22596 0.97481 0.98795 0.86890 0.92136 0.91861 0.92354 0.89948 0.92362 0.91867 0.92138 0.84096 0.83262 0.75577 0.90822 0.90158 0.90769 0.94874 0.95586 0.91760 0.95428 0.89311 0.93660 0.95607 0.92565 0.91953 0.95337 0.82275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.54 9.01 37.16 0.33 -0.20 16 2 C -0.05 -0.22 3.11 -91.77 -0.29 -0.50 16 3 C -0.15 -0.52 9.01 37.16 0.33 -0.19 16 4 C -0.11 -0.69 4.80 -104.36 -0.50 -1.19 16 5 C -0.08 -0.56 9.79 -39.31 -0.39 -0.94 16 6 C -0.11 -1.00 9.63 -39.05 -0.38 -1.38 16 7 C 0.08 0.86 6.75 -83.01 -0.56 0.30 16 8 C 0.57 7.82 7.81 -12.18 -0.10 7.72 16 9 O -0.53 -8.94 16.32 5.35 0.09 -8.86 16 10 N -0.71 -8.83 5.54 -61.14 -0.34 -9.17 16 11 C 0.12 1.68 5.60 -4.04 -0.02 1.66 16 12 C 0.05 0.63 5.08 -3.82 -0.02 0.61 16 13 N -0.53 -9.45 4.63 -234.32 -1.08 -10.53 16 14 C 0.03 0.61 5.46 -3.70 -0.02 0.59 16 15 C 0.18 4.39 5.42 -3.61 -0.02 4.37 16 16 N -0.60 -15.31 3.04 -172.02 -0.52 -15.84 16 17 C -0.25 -7.02 9.63 -15.06 -0.15 -7.16 16 18 H 0.07 1.80 7.88 -52.48 -0.41 1.38 16 19 C 0.00 0.02 4.94 -17.43 -0.09 -0.07 16 20 N -0.90 -26.63 11.15 55.49 0.62 -26.01 16 21 Si 0.90 21.94 29.59 -169.99 -5.03 16.91 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 C 0.15 3.19 6.69 -3.61 -0.02 3.16 16 26 C 0.05 0.83 5.62 -3.70 -0.02 0.81 16 27 N -0.46 -4.59 9.54 -9.80 -0.09 -4.68 16 28 C 0.10 0.77 9.90 -17.57 -0.17 0.59 16 29 H 0.06 0.22 7.41 -51.93 -0.38 -0.17 16 30 H 0.06 0.18 8.14 -51.93 -0.42 -0.25 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.08 0.27 7.92 -51.93 -0.41 -0.14 16 33 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 35 H 0.06 0.21 7.41 -51.93 -0.38 -0.18 16 36 H 0.14 0.59 8.00 -52.49 -0.42 0.17 16 37 H 0.15 1.37 7.64 -52.48 -0.40 0.97 16 38 H 0.41 4.36 7.80 -40.82 -0.32 4.04 16 39 H 0.07 1.15 6.40 -51.93 -0.33 0.81 16 40 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.07 0.92 7.97 -51.93 -0.41 0.51 16 42 H 0.03 0.46 8.12 -51.93 -0.42 0.03 16 43 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 1.19 6.16 -51.93 -0.32 0.87 16 45 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.09 2.42 6.12 -51.93 -0.32 2.10 16 47 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 48 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 49 H 0.06 1.15 7.96 -51.93 -0.41 0.74 16 50 H 0.06 0.95 7.99 -51.93 -0.41 0.53 16 51 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 52 H 0.16 0.82 7.12 -52.49 -0.37 0.44 16 LS Contribution 412.87 15.07 6.22 6.22 Total: -1.00 -32.85 412.87 -10.89 -43.74 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -8.68 Total: 0.04 kcal Atomic # 6 Polarization: 10.24 SS G_CDS: -2.06 Total: 8.18 kcal Atomic # 7 Polarization: -64.81 SS G_CDS: -1.42 Total: -66.23 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.09 Total: -8.86 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -32.85 -10.89 -43.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265264474.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.468 kcal (2) G-P(sol) polarization free energy of solvation -32.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.94 seconds