Wall clock time and date at job start Wed Apr 1 2020 04:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50696 * 109.46965 * 2 1 4 4 C 1.38549 * 120.01699 * 125.28498 * 3 2 1 5 5 C 1.40079 * 117.81755 * 180.26293 * 4 3 2 6 6 C 1.48131 * 121.14442 * 179.73928 * 5 4 3 7 7 O 1.21511 * 119.99795 * 173.86406 * 6 5 4 8 8 N 1.34776 * 120.00280 * 353.86735 * 6 5 4 9 9 C 1.46503 * 120.00399 * 179.97438 * 8 6 5 10 10 H 1.09003 * 109.46562 * 34.99822 * 9 8 6 11 11 C 1.52995 * 109.47013 * 154.99481 * 9 8 6 12 12 C 1.53005 * 109.46827 * 179.97438 * 11 9 8 13 13 C 1.52995 * 109.47641 * 300.00724 * 12 11 9 14 14 H 1.09004 * 109.46638 * 300.00069 * 13 12 11 15 15 C 1.53001 * 109.47185 * 179.97438 * 13 12 11 16 16 N 1.46497 * 109.46819 * 174.99574 * 15 13 12 17 17 C 1.36944 * 119.99861 * 179.97438 * 16 15 13 18 18 H 1.07999 * 119.99627 * 0.02562 * 17 16 15 19 19 C 1.38813 * 119.99902 * 180.02562 * 17 16 15 20 20 N 1.31611 * 120.00022 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99703 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47375 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46839 * 120.00161 * 21 19 17 24 24 H 1.48500 * 109.47191 * 239.99983 * 21 19 17 25 25 C 1.53000 * 109.47246 * 59.99389 * 13 12 11 26 26 C 1.52997 * 109.46995 * 275.00310 * 9 8 6 27 27 C 1.39761 * 117.70434 * 359.46848 * 5 4 3 28 28 C 1.50705 * 120.17019 * 180.29504 * 27 5 4 29 29 N 1.31896 * 119.66192 * 0.27363 * 27 5 4 30 30 N 1.28272 * 122.32533 * 359.97438 * 29 27 5 31 31 H 1.09007 * 109.47255 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47112 * 299.99698 * 1 2 3 33 33 H 1.08996 * 109.47623 * 59.99700 * 1 2 3 34 34 H 1.09004 * 109.47112 * 240.00302 * 2 1 3 35 35 H 1.08996 * 109.47623 * 120.00300 * 2 1 3 36 36 H 1.07997 * 121.09085 * 0.02562 * 4 3 2 37 37 H 0.97005 * 119.99708 * 359.97438 * 8 6 5 38 38 H 1.09003 * 109.47178 * 60.00718 * 11 9 8 39 39 H 1.08997 * 109.47743 * 299.99980 * 11 9 8 40 40 H 1.09005 * 109.47086 * 179.97438 * 12 11 9 41 41 H 1.09004 * 109.46823 * 60.00899 * 12 11 9 42 42 H 1.08990 * 109.47349 * 294.99970 * 15 13 12 43 43 H 1.09004 * 109.46732 * 55.00093 * 15 13 12 44 44 H 0.97005 * 120.00464 * 0.02562 * 16 15 13 45 45 H 0.97005 * 120.00324 * 180.02562 * 20 19 17 46 46 H 1.09004 * 109.46568 * 60.00223 * 25 13 12 47 47 H 1.08995 * 109.46945 * 180.02562 * 25 13 12 48 48 H 1.09004 * 109.46550 * 299.99300 * 26 9 8 49 49 H 1.08994 * 109.47590 * 59.99420 * 26 9 8 50 50 H 1.09006 * 109.47385 * 83.71059 * 28 27 5 51 51 H 1.08994 * 109.47182 * 203.71368 * 28 27 5 52 52 H 1.08997 * 109.47286 * 323.71348 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9166 1.8433 0.9793 5 6 3.3495 3.1749 0.9387 6 6 4.2901 3.7060 1.9524 7 8 4.7390 4.8290 1.8352 8 7 4.6480 2.9435 3.0045 9 6 5.5787 3.4685 4.0068 10 1 5.4062 4.5368 4.1383 11 6 5.3545 2.7481 5.3378 12 6 6.3269 3.2959 6.3843 13 6 7.7647 3.0649 5.9151 14 1 7.9366 1.9966 5.7834 15 6 8.7370 3.6134 6.9614 16 7 10.1105 3.2867 6.5703 17 6 11.1587 3.6788 7.3594 18 1 10.9728 4.2286 8.2702 19 6 12.4602 3.3697 6.9885 20 7 12.6867 2.7001 5.8783 21 14 13.8900 3.9040 8.0653 22 1 13.3719 4.6363 9.2487 23 1 14.6447 2.7070 8.5158 24 1 14.7902 4.7929 7.2876 25 6 7.9888 3.7854 4.5840 26 6 7.0166 3.2380 3.5378 27 6 2.8679 3.9835 -0.0945 28 6 3.3026 5.4229 -0.1952 29 7 2.0313 3.4802 -0.9814 30 7 1.6349 2.2611 -0.9357 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 3.2580 1.1692 1.7509 37 1 4.2893 2.0471 3.0982 38 1 5.5269 1.6798 5.2063 39 1 4.3301 2.9124 5.6719 40 1 6.1669 2.7830 7.3327 41 1 6.1549 4.3642 6.5160 42 1 8.6260 4.6956 7.0286 43 1 8.5187 3.1649 7.9306 44 1 10.2775 2.7932 5.7520 45 1 13.5961 2.4837 5.6193 46 1 7.8167 4.8537 4.7157 47 1 9.0129 3.6204 4.2496 48 1 7.1889 2.1697 3.4063 49 1 7.1762 3.7512 2.5896 50 1 4.2599 5.4781 -0.7136 51 1 2.5556 5.9901 -0.7503 52 1 3.4070 5.8418 0.8057 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272747653.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:26 Heat of formation + Delta-G solvation = -18.203134 kcal Electronic energy + Delta-G solvation = -29943.686898 eV Core-core repulsion = 25941.769433 eV Total energy + Delta-G solvation = -4001.917465 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.53995 -40.99526 -39.47895 -36.86855 -36.21539 -35.32872 -34.66521 -33.20296 -32.41770 -31.71459 -30.55371 -28.88073 -27.31558 -26.45461 -24.65854 -24.47741 -23.78852 -23.29088 -21.98080 -21.64134 -20.79743 -19.18342 -18.86924 -18.63319 -17.13327 -16.81244 -16.80772 -16.67064 -16.26756 -16.02183 -15.62773 -15.46023 -15.27618 -15.07331 -15.00132 -14.79453 -14.59883 -14.35706 -13.94060 -13.78757 -13.51048 -13.46019 -13.21386 -13.10823 -13.02740 -12.88023 -12.78945 -12.72567 -12.16705 -12.10804 -12.05639 -12.01764 -11.90369 -11.84291 -11.53507 -11.39385 -11.36005 -11.19425 -11.14259 -10.90292 -10.62518 -10.53530 -10.10758 -8.97362 -7.95371 -5.23078 -0.81576 -0.26737 1.46501 1.47269 1.57359 1.59351 1.82809 2.42125 2.55886 2.81206 3.10218 3.25908 3.38315 3.49439 3.62665 3.74942 3.76472 3.93773 3.98930 4.08177 4.10131 4.17287 4.37948 4.40557 4.44841 4.46298 4.54814 4.55392 4.58444 4.60140 4.64561 4.65354 4.81200 4.90329 4.95970 5.03524 5.07535 5.08342 5.09425 5.15303 5.18472 5.22077 5.25206 5.27605 5.33206 5.43275 5.43897 5.47834 5.55982 5.63671 6.27926 6.35719 7.01528 7.33963 7.54133 8.12383 8.34740 9.28478 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019680 B = 0.001811 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.392595 B =15454.982602 C =15818.692576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.068 4.068 3 C 0.059 3.941 4 C -0.060 4.060 5 C -0.140 4.140 6 C 0.562 3.438 7 O -0.548 6.548 8 N -0.698 5.698 9 C 0.153 3.847 10 H 0.076 0.924 11 C -0.112 4.112 12 C -0.102 4.102 13 C -0.083 4.083 14 H 0.068 0.932 15 C 0.152 3.848 16 N -0.744 5.744 17 C -0.243 4.243 18 H 0.074 0.926 19 C -0.078 4.078 20 N -0.970 5.970 21 Si 0.972 3.028 22 H -0.266 1.266 23 H -0.292 1.292 24 H -0.295 1.295 25 C -0.101 4.101 26 C -0.118 4.118 27 C 0.104 3.896 28 C -0.101 4.101 29 N -0.271 5.271 30 N -0.248 5.248 31 H 0.082 0.918 32 H 0.051 0.949 33 H 0.047 0.953 34 H 0.095 0.905 35 H 0.119 0.881 36 H 0.198 0.802 37 H 0.416 0.584 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.064 0.936 42 H 0.014 0.986 43 H 0.022 0.978 44 H 0.374 0.626 45 H 0.250 0.750 46 H 0.052 0.948 47 H 0.039 0.961 48 H 0.073 0.927 49 H 0.047 0.953 50 H 0.084 0.916 51 H 0.082 0.918 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.259 -6.644 -8.521 30.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.106 4.106 3 C -0.087 4.087 4 C -0.090 4.090 5 C -0.154 4.154 6 C 0.348 3.652 7 O -0.426 6.426 8 N -0.349 5.349 9 C 0.049 3.951 10 H 0.094 0.906 11 C -0.150 4.150 12 C -0.140 4.140 13 C -0.102 4.102 14 H 0.086 0.914 15 C 0.026 3.974 16 N -0.387 5.387 17 C -0.375 4.375 18 H 0.092 0.908 19 C -0.270 4.270 20 N -0.621 5.621 21 Si 0.802 3.198 22 H -0.190 1.190 23 H -0.219 1.219 24 H -0.222 1.222 25 C -0.140 4.140 26 C -0.157 4.157 27 C -0.042 4.042 28 C -0.159 4.159 29 N -0.112 5.112 30 N -0.090 5.090 31 H 0.101 0.899 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.113 0.887 35 H 0.137 0.863 36 H 0.215 0.785 37 H 0.255 0.745 38 H 0.105 0.895 39 H 0.111 0.889 40 H 0.100 0.900 41 H 0.083 0.917 42 H 0.032 0.968 43 H 0.040 0.960 44 H 0.206 0.794 45 H 0.059 0.941 46 H 0.071 0.929 47 H 0.058 0.942 48 H 0.092 0.908 49 H 0.066 0.934 50 H 0.103 0.897 51 H 0.101 0.899 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -28.810 -5.487 -9.786 30.917 hybrid contribution 2.190 -0.159 1.103 2.458 sum -26.619 -5.646 -8.683 28.563 Atomic orbital electron populations 1.21705 0.93780 1.03147 1.01798 1.20662 0.97180 0.86870 1.05899 1.23445 0.94119 0.99733 0.91372 1.23015 0.92913 0.94326 0.98715 1.21090 1.00404 0.96087 0.97851 1.17999 0.80603 0.85059 0.81531 1.90779 1.55517 1.20043 1.76287 1.45808 1.46607 1.18963 1.23563 1.20990 0.87212 0.99310 0.87596 0.90592 1.21737 1.00508 1.00873 0.91880 1.21428 0.91789 1.01907 0.98921 1.21250 0.95298 0.99707 0.93967 0.91377 1.20903 0.83830 0.96583 0.96112 1.42617 1.01459 1.67466 1.27184 1.19699 0.86972 1.27830 1.03049 0.90783 1.25559 0.99987 1.02103 0.99353 1.69816 1.19803 1.46588 1.25882 0.85083 0.79416 0.77132 0.78206 1.19050 1.21914 1.22208 1.21358 0.98256 0.99457 0.94917 1.21804 0.94441 1.01614 0.97792 1.23297 0.91668 0.99324 0.89877 1.20908 1.01918 0.87955 1.05123 1.73055 1.10136 1.06273 1.21776 1.72681 1.18108 0.97652 1.20552 0.89930 0.92956 0.93402 0.88687 0.86309 0.78481 0.74540 0.89484 0.88903 0.89986 0.91695 0.96836 0.96026 0.79369 0.94068 0.92920 0.94190 0.90850 0.93437 0.89744 0.89913 0.88529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.78 71.98 0.70 -0.41 16 2 C -0.07 -0.43 6.35 29.85 0.19 -0.24 16 3 C 0.06 0.79 6.25 42.62 0.27 1.06 16 4 C -0.06 -0.64 9.29 22.79 0.21 -0.42 16 5 C -0.14 -2.42 5.92 -19.83 -0.12 -2.54 16 6 C 0.56 10.82 7.70 86.87 0.67 11.49 16 7 O -0.55 -14.59 13.19 -3.75 -0.05 -14.64 16 8 N -0.70 -9.42 5.04 -445.15 -2.24 -11.67 16 9 C 0.15 2.74 2.45 44.99 0.11 2.85 16 10 H 0.08 1.68 7.58 -2.39 -0.02 1.66 16 11 C -0.11 -1.51 5.39 30.59 0.16 -1.34 16 12 C -0.10 -2.01 5.20 30.59 0.16 -1.85 16 13 C -0.08 -2.41 2.23 -10.79 -0.02 -2.43 16 14 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 15 C 0.15 5.91 5.65 86.38 0.49 6.40 16 16 N -0.74 -37.84 5.33 -343.46 -1.83 -39.67 16 17 C -0.24 -13.74 9.99 84.03 0.84 -12.90 16 18 H 0.07 4.03 7.83 -2.91 -0.02 4.00 16 19 C -0.08 -4.52 5.50 84.86 0.47 -4.06 16 20 N -0.97 -59.78 13.06 21.65 0.28 -59.50 16 21 Si 0.97 46.51 29.55 68.60 2.03 48.53 16 22 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 23 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 24 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 25 C -0.10 -3.09 5.07 30.58 0.16 -2.94 16 26 C -0.12 -2.80 5.49 30.58 0.17 -2.63 16 27 C 0.10 2.23 6.91 42.92 0.30 2.53 16 28 C -0.10 -2.05 8.98 71.24 0.64 -1.41 16 29 N -0.27 -6.49 11.42 -46.94 -0.54 -7.03 16 30 N -0.25 -5.24 11.04 -47.68 -0.53 -5.77 16 31 H 0.08 0.34 8.14 -2.38 -0.02 0.32 16 32 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.05 0.56 7.96 -2.39 -0.02 0.54 16 34 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.12 -0.02 7.92 -2.39 -0.02 -0.04 16 36 H 0.20 0.15 6.60 -2.91 -0.02 0.13 16 37 H 0.42 2.38 6.83 -92.70 -0.63 1.74 16 38 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 41 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 42 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.37 20.16 6.85 -92.70 -0.63 19.53 16 45 H 0.25 14.93 8.31 -92.70 -0.77 14.16 16 46 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 47 H 0.04 1.51 7.18 -2.39 -0.02 1.49 16 48 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 49 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 50 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 51 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 52 H 0.10 2.11 5.93 -2.39 -0.01 2.10 16 Total: -1.00 -76.52 413.21 2.17 -74.35 By element: Atomic # 1 Polarization: 24.58 SS G_CDS: -0.34 Total: 24.24 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: 5.39 Total: -8.84 kcal Atomic # 7 Polarization: -118.78 SS G_CDS: -4.85 Total: -123.63 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.05 Total: -14.64 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.53 kcal Total: -76.52 2.17 -74.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272747653.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.145 kcal (2) G-P(sol) polarization free energy of solvation -76.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds