Wall clock time and date at job start Wed Apr 1 2020 06:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34956 * 126.03132 * 2 1 4 4 C 1.35314 * 107.74069 * 179.97438 * 3 2 1 5 5 C 1.50703 * 126.03867 * 180.02562 * 4 3 2 6 6 H 1.09002 * 110.78064 * 356.74975 * 5 4 3 7 7 C 1.54332 * 110.71690 * 233.51560 * 5 4 3 8 8 N 1.47019 * 107.26924 * 219.43770 * 7 5 4 9 9 C 1.34773 * 125.64942 * 178.99409 * 8 7 5 10 10 O 1.21620 * 120.00059 * 0.02562 * 9 8 7 11 11 C 1.47103 * 120.00497 * 180.02562 * 9 8 7 12 12 C 1.32993 * 120.00076 * 180.02562 * 11 9 8 13 13 C 1.50700 * 119.99567 * 180.02562 * 12 11 9 14 14 C 1.52993 * 109.47410 * 359.97438 * 13 12 11 15 15 C 1.53001 * 109.47058 * 120.00007 * 13 12 11 16 16 C 1.53008 * 109.46872 * 239.99730 * 13 12 11 17 17 C 1.47469 * 108.72490 * 358.97869 * 8 7 5 18 18 C 1.54913 * 104.80928 * 24.06845 * 17 8 7 19 19 H 1.08996 * 111.00725 * 81.13925 * 18 17 8 20 20 N 1.46504 * 111.00066 * 204.95191 * 18 17 8 21 21 C 1.36943 * 119.99781 * 270.41724 * 20 18 17 22 22 H 1.08002 * 119.99788 * 359.97438 * 21 20 18 23 23 C 1.38811 * 119.99622 * 180.27904 * 21 20 18 24 24 N 1.31614 * 120.00467 * 359.72375 * 23 21 20 25 25 Si 1.86801 * 119.99700 * 179.72266 * 23 21 20 26 26 H 1.48504 * 109.47306 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47021 * 119.99661 * 25 23 21 28 28 H 1.48501 * 109.47039 * 240.00078 * 25 23 21 29 29 C 1.39868 * 107.92317 * 0.25759 * 4 3 2 30 30 N 1.30838 * 108.20161 * 359.55637 * 29 4 3 31 31 H 1.09000 * 109.46959 * 90.00275 * 1 2 3 32 32 H 1.09000 * 109.46831 * 210.00223 * 1 2 3 33 33 H 1.08999 * 109.47055 * 330.00163 * 1 2 3 34 34 H 1.07997 * 126.13224 * 359.97438 * 3 2 1 35 35 H 1.08996 * 109.88074 * 338.85666 * 7 5 4 36 36 H 1.09004 * 109.88103 * 100.02678 * 7 5 4 37 37 H 1.08001 * 119.99718 * 0.02562 * 11 9 8 38 38 H 1.07991 * 120.00143 * 359.97438 * 12 11 9 39 39 H 1.08995 * 109.47368 * 60.00175 * 14 13 12 40 40 H 1.09006 * 109.47608 * 180.02562 * 14 13 12 41 41 H 1.09006 * 109.47058 * 300.00075 * 14 13 12 42 42 H 1.09003 * 109.47272 * 60.00074 * 15 13 12 43 43 H 1.09007 * 109.47202 * 179.97438 * 15 13 12 44 44 H 1.08995 * 109.47049 * 299.99413 * 15 13 12 45 45 H 1.08995 * 109.46634 * 60.00059 * 16 13 12 46 46 H 1.08999 * 109.46851 * 180.02562 * 16 13 12 47 47 H 1.09003 * 109.46989 * 300.00176 * 16 13 12 48 48 H 1.08997 * 110.34970 * 265.25221 * 17 8 7 49 49 H 1.09006 * 110.40687 * 142.91052 * 17 8 7 50 50 H 0.97000 * 120.00410 * 90.42049 * 20 18 17 51 51 H 0.96995 * 120.00147 * 180.02562 * 24 23 21 52 52 H 1.08008 * 125.89951 * 179.74630 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0914 0.0000 4 6 3.5436 0.6667 0.0006 5 6 4.7679 1.5455 0.0013 6 1 4.4888 2.5976 -0.0564 7 6 5.7125 1.1668 -1.1589 8 7 7.0883 1.2537 -0.6477 9 6 8.2058 0.9801 -1.3497 10 8 8.1235 0.6272 -2.5106 11 6 9.5251 1.1084 -0.7117 12 6 10.6278 0.8389 -1.4046 13 6 11.9792 0.9698 -0.7508 14 6 11.8024 1.4245 0.6993 15 6 12.6922 -0.3837 -0.7781 16 6 12.8153 2.0020 -1.5101 17 6 7.0435 1.6901 0.7602 18 6 5.6363 1.2761 1.2585 19 1 5.6130 0.2209 1.5307 20 7 5.2092 2.1147 2.3813 21 6 5.5111 1.7458 3.6651 22 1 6.0637 0.8364 3.8498 23 6 5.1014 2.5374 4.7292 24 7 4.4275 3.6453 4.5041 25 14 5.5065 2.0302 6.4808 26 1 6.2657 0.7541 6.4636 27 1 6.3277 3.0867 7.1246 28 1 4.2475 1.8463 7.2465 29 6 3.5347 -0.7319 -0.0050 30 7 2.2892 -1.1327 0.0008 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5138 34 1 1.9281 2.1194 -0.0004 35 1 5.5036 0.1495 -1.4900 36 1 5.5802 1.8630 -1.9870 37 1 9.5981 1.4214 0.3194 38 1 10.5547 0.5255 -2.4355 39 1 11.2067 0.6895 1.2405 40 1 12.7800 1.5196 1.1721 41 1 11.2946 2.3888 0.7183 42 1 12.8183 -0.7072 -1.8113 43 1 13.6699 -0.2889 -0.3055 44 1 12.0966 -1.1190 -0.2371 45 1 12.3073 2.9662 -1.4907 46 1 13.7929 2.0964 -1.0375 47 1 12.9413 1.6785 -2.5434 48 1 7.1664 2.7711 0.8261 49 1 7.8153 1.1836 1.3398 50 1 4.7125 2.9312 2.2154 51 1 4.1415 4.1986 5.2476 52 1 4.4055 -1.3708 -0.0099 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316668043.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:42:53 Heat of formation + Delta-G solvation = 50.547474 kcal Electronic energy + Delta-G solvation = -30653.005897 eV Core-core repulsion = 26654.069682 eV Total energy + Delta-G solvation = -3998.936215 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.19990 -40.99297 -39.12573 -38.32010 -35.81105 -34.47145 -33.32312 -32.62712 -32.06773 -29.93034 -28.97229 -28.21310 -28.07556 -27.31202 -25.95619 -24.93355 -23.14324 -22.49261 -21.71601 -20.69216 -20.26936 -19.19371 -19.00581 -18.32072 -17.56402 -17.07919 -16.81103 -16.26306 -16.17581 -15.80663 -15.49211 -15.33294 -15.11703 -14.96600 -14.88998 -14.67222 -14.29523 -14.04595 -13.88901 -13.62167 -13.50325 -13.31938 -13.16355 -13.10772 -13.06310 -12.91370 -12.84262 -12.57714 -12.53196 -12.33802 -12.11291 -11.93066 -11.92750 -11.78909 -11.73308 -11.58876 -11.39715 -11.06660 -10.87208 -10.41737 -10.28992 -9.61541 -9.27803 -8.89968 -7.90028 -5.17478 0.40758 1.00747 1.49805 1.52164 1.59928 1.74705 1.83319 2.06672 2.31075 2.59702 3.41229 3.42960 3.59448 3.82608 3.87367 3.87928 4.05500 4.09258 4.12799 4.14494 4.25682 4.30667 4.36782 4.41604 4.46215 4.46925 4.54864 4.60903 4.70005 4.77249 4.78928 4.80996 4.85072 4.92265 4.98214 5.02328 5.04154 5.06395 5.14033 5.16370 5.21835 5.27164 5.33173 5.44819 5.44860 5.54786 5.58806 5.60350 5.73303 6.19753 6.31341 6.54638 6.77170 7.15476 7.40183 8.11314 8.36890 9.32803 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007424 B = 0.003459 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3770.694422 B = 8092.592408 C =11132.239535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.381 5.381 3 C 0.064 3.936 4 C -0.226 4.226 5 C -0.014 4.014 6 H 0.092 0.908 7 C 0.125 3.875 8 N -0.607 5.607 9 C 0.553 3.447 10 O -0.594 6.594 11 C -0.228 4.228 12 C -0.042 4.042 13 C -0.046 4.046 14 C -0.150 4.150 15 C -0.137 4.137 16 C -0.136 4.136 17 C 0.086 3.914 18 C 0.181 3.819 19 H 0.058 0.942 20 N -0.713 5.713 21 C -0.233 4.233 22 H 0.074 0.926 23 C -0.064 4.064 24 N -0.963 5.963 25 Si 0.959 3.041 26 H -0.268 1.268 27 H -0.294 1.294 28 H -0.300 1.300 29 C 0.047 3.953 30 N -0.331 5.331 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.107 0.893 34 H 0.197 0.803 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.142 0.858 38 H 0.116 0.884 39 H 0.055 0.945 40 H 0.074 0.926 41 H 0.055 0.945 42 H 0.062 0.938 43 H 0.076 0.924 44 H 0.051 0.949 45 H 0.052 0.948 46 H 0.076 0.924 47 H 0.062 0.938 48 H 0.066 0.934 49 H 0.077 0.923 50 H 0.378 0.622 51 H 0.249 0.751 52 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.712 -4.053 -11.666 14.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.164 5.164 3 C -0.083 4.083 4 C -0.237 4.237 5 C -0.035 4.035 6 H 0.110 0.890 7 C 0.002 3.998 8 N -0.338 5.338 9 C 0.346 3.654 10 O -0.477 6.477 11 C -0.248 4.248 12 C -0.062 4.062 13 C -0.047 4.047 14 C -0.207 4.207 15 C -0.194 4.194 16 C -0.194 4.194 17 C -0.039 4.039 18 C 0.070 3.930 19 H 0.076 0.924 20 N -0.352 5.352 21 C -0.365 4.365 22 H 0.092 0.908 23 C -0.257 4.257 24 N -0.613 5.613 25 Si 0.790 3.210 26 H -0.193 1.193 27 H -0.221 1.221 28 H -0.227 1.227 29 C -0.138 4.138 30 N -0.154 5.154 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.125 0.875 34 H 0.213 0.787 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.160 0.840 38 H 0.134 0.866 39 H 0.074 0.926 40 H 0.093 0.907 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.095 0.905 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.095 0.905 47 H 0.081 0.919 48 H 0.084 0.916 49 H 0.095 0.905 50 H 0.211 0.789 51 H 0.058 0.942 52 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 5.781 -5.372 -12.122 14.464 hybrid contribution 0.134 0.922 1.135 1.469 sum 5.914 -4.450 -10.986 13.247 Atomic orbital electron populations 1.22150 0.72177 1.05566 1.04608 1.48711 1.07816 1.03263 1.56568 1.22705 0.90617 0.94351 1.00578 1.19729 0.94100 0.93361 1.16531 1.20548 0.90841 0.98538 0.93542 0.88975 1.21911 0.80050 1.01607 0.96218 1.48404 1.05922 1.65854 1.13637 1.18763 0.85053 0.76456 0.85114 1.90718 1.87904 1.50696 1.18431 1.22769 0.90798 1.08989 1.02293 1.23877 0.93881 0.89434 0.99037 1.19843 0.91475 0.97676 0.95658 1.22027 1.02802 1.01285 0.94613 1.21828 1.00532 0.94403 1.02607 1.21827 0.99705 0.97527 1.00292 1.23237 1.01349 0.99754 0.79605 1.21411 0.90334 0.94536 0.86677 0.92388 1.42282 1.65642 1.26374 1.00894 1.19572 1.27737 1.04956 0.84233 0.90760 1.25338 1.01662 0.97705 1.00960 1.69779 1.44753 1.15967 1.30822 0.85284 0.76818 0.77581 0.81365 1.19279 1.22105 1.22748 1.23819 0.95194 0.95104 0.99688 1.77206 1.02147 1.09809 1.26192 0.89043 0.89379 0.87502 0.78657 0.91561 0.91352 0.84038 0.86643 0.92566 0.90728 0.92554 0.91904 0.90476 0.92937 0.92919 0.90476 0.91906 0.91561 0.90508 0.78880 0.94160 0.79996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.65 11.47 127.77 1.47 3.11 16 2 N -0.38 -10.54 4.01 -369.56 -1.48 -12.02 16 3 C 0.06 1.79 11.40 83.54 0.95 2.74 16 4 C -0.23 -6.97 4.95 -20.14 -0.10 -7.07 16 5 C -0.01 -0.42 3.00 -10.35 -0.03 -0.45 16 6 H 0.09 2.78 7.99 -2.39 -0.02 2.77 16 7 C 0.13 3.77 6.42 86.73 0.56 4.33 16 8 N -0.61 -19.18 3.33 -815.92 -2.71 -21.90 16 9 C 0.55 18.20 7.80 86.57 0.67 18.88 16 10 O -0.59 -22.91 16.55 -4.09 -0.07 -22.98 16 11 C -0.23 -6.05 8.43 23.43 0.20 -5.86 16 12 C -0.04 -0.96 8.33 24.52 0.20 -0.76 16 13 C -0.05 -0.78 0.99 -52.93 -0.05 -0.84 16 14 C -0.15 -2.57 7.13 71.98 0.51 -2.05 16 15 C -0.14 -1.96 8.46 71.98 0.61 -1.36 16 16 C -0.14 -1.95 8.46 71.98 0.61 -1.34 16 17 C 0.09 2.81 6.22 86.85 0.54 3.35 16 18 C 0.18 6.56 3.12 46.38 0.14 6.70 16 19 H 0.06 2.23 7.66 -2.39 -0.02 2.21 16 20 N -0.71 -32.28 5.26 -316.37 -1.66 -33.95 16 21 C -0.23 -11.93 9.97 84.03 0.84 -11.10 16 22 H 0.07 3.71 7.83 -2.91 -0.02 3.69 16 23 C -0.06 -3.44 5.50 84.86 0.47 -2.97 16 24 N -0.96 -55.20 13.06 21.65 0.28 -54.92 16 25 Si 0.96 44.14 29.55 68.60 2.03 46.17 16 26 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 27 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 28 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 29 C 0.05 1.51 10.73 85.24 0.91 2.42 16 30 N -0.33 -10.88 12.58 -57.02 -0.72 -11.59 16 31 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.20 4.30 8.06 -2.91 -0.02 4.27 16 35 H 0.07 2.03 7.21 -2.39 -0.02 2.02 16 36 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 37 H 0.14 3.48 4.56 -2.91 -0.01 3.47 16 38 H 0.12 2.84 7.49 -2.92 -0.02 2.82 16 39 H 0.06 1.03 7.50 -2.39 -0.02 1.01 16 40 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 41 H 0.06 1.03 7.50 -2.38 -0.02 1.02 16 42 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 44 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 48 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 49 H 0.08 2.41 7.15 -2.38 -0.02 2.40 16 50 H 0.38 18.34 7.73 -92.71 -0.72 17.62 16 51 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 52 H 0.18 5.29 8.06 -2.91 -0.02 5.27 16 Total: -1.00 -68.89 422.80 4.35 -64.54 By element: Atomic # 1 Polarization: 38.71 SS G_CDS: 0.19 Total: 38.90 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: 8.50 Total: 7.75 kcal Atomic # 7 Polarization: -128.08 SS G_CDS: -6.30 Total: -134.38 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -0.07 Total: -22.98 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -68.89 4.35 -64.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316668043.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.086 kcal (2) G-P(sol) polarization free energy of solvation -68.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds