Wall clock time and date at job start Wed Apr 1 2020 04:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46765 * 2 1 4 4 C 1.50702 * 109.47238 * 120.00272 * 2 1 3 5 5 N 1.32167 * 120.53416 * 290.67039 * 4 2 1 6 6 C 1.31850 * 120.96458 * 180.33485 * 5 4 2 7 7 N 1.31885 * 122.09727 * 359.66066 * 6 5 4 8 8 C 1.32136 * 120.96783 * 0.02562 * 7 6 5 9 9 C 1.39931 * 120.53983 * 110.39145 * 4 2 1 10 10 C 1.47831 * 120.93406 * 359.97147 * 9 4 2 11 11 O 1.21553 * 120.00322 * 323.42297 * 10 9 4 12 12 N 1.34778 * 119.99667 * 143.42780 * 10 9 4 13 13 C 1.46501 * 120.00312 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.46461 * 34.99685 * 13 12 10 15 15 C 1.52997 * 109.47084 * 275.00268 * 13 12 10 16 16 C 1.53000 * 109.46727 * 179.97438 * 15 13 12 17 17 C 1.53002 * 109.47056 * 60.00272 * 16 15 13 18 18 C 1.52992 * 109.46813 * 299.99431 * 17 16 15 19 19 C 1.52990 * 109.47167 * 154.99718 * 13 12 10 20 20 H 1.09002 * 109.47457 * 60.00577 * 19 13 12 21 21 C 1.52997 * 109.47567 * 300.00254 * 19 13 12 22 22 N 1.46506 * 109.47280 * 174.99899 * 21 19 13 23 23 C 1.36939 * 119.99656 * 180.02562 * 22 21 19 24 24 H 1.07995 * 120.00269 * 359.97438 * 23 22 21 25 25 C 1.38813 * 119.99548 * 180.02562 * 23 22 21 26 26 N 1.31616 * 120.00008 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 119.99903 * 179.97438 * 25 23 22 28 28 H 1.48502 * 109.47199 * 59.99883 * 27 25 23 29 29 H 1.48500 * 109.47011 * 179.97438 * 27 25 23 30 30 H 1.48499 * 109.47149 * 299.99589 * 27 25 23 31 31 H 1.08997 * 109.46896 * 299.99740 * 1 2 3 32 32 H 1.08996 * 109.47241 * 60.00050 * 1 2 3 33 33 H 1.09004 * 109.46857 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.46896 * 240.00260 * 2 1 3 35 35 H 1.09003 * 109.46751 * 180.02562 * 3 2 1 36 36 H 1.08996 * 109.47200 * 299.99975 * 3 2 1 37 37 H 1.08997 * 109.47202 * 60.00447 * 3 2 1 38 38 H 1.08005 * 118.95620 * 179.68158 * 6 5 4 39 39 H 1.07993 * 120.54329 * 180.02562 * 8 7 6 40 40 H 0.97000 * 119.99779 * 0.02562 * 12 10 9 41 41 H 1.08997 * 109.47243 * 59.99677 * 15 13 12 42 42 H 1.08999 * 109.47344 * 299.99465 * 15 13 12 43 43 H 1.08999 * 109.47658 * 299.99898 * 16 15 13 44 44 H 1.09008 * 109.47086 * 179.97438 * 16 15 13 45 45 H 1.09006 * 109.46822 * 179.97438 * 17 16 15 46 46 H 1.08999 * 109.47323 * 59.99881 * 17 16 15 47 47 H 1.09007 * 109.47031 * 180.02562 * 18 17 16 48 48 H 1.08999 * 109.47543 * 300.00315 * 18 17 16 49 49 H 1.09000 * 109.47420 * 295.00397 * 21 19 13 50 50 H 1.09000 * 109.46911 * 55.00364 * 21 19 13 51 51 H 0.96996 * 120.00037 * 0.02562 * 22 21 19 52 52 H 0.97004 * 120.00130 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7105 1.2304 5 7 1.8773 -0.1716 2.4273 6 6 2.3194 -0.7827 3.5088 7 7 2.9261 -1.9524 3.4542 8 6 3.1178 -2.5657 2.2996 9 6 2.6653 -1.9540 1.1249 10 6 2.8561 -2.6003 -0.1909 11 8 1.9998 -2.4991 -1.0477 12 7 3.9794 -3.3020 -0.4404 13 6 4.1684 -3.9430 -1.7441 14 1 3.7278 -3.3200 -2.5225 15 6 3.4882 -5.3134 -1.7419 16 6 3.6850 -5.9826 -3.1037 17 6 5.1807 -6.1560 -3.3752 18 6 5.8608 -4.7856 -3.3774 19 6 5.6641 -4.1164 -2.0152 20 1 6.1046 -4.7394 -1.2368 21 6 6.3443 -2.7459 -2.0174 22 7 7.7922 -2.9196 -2.1577 23 6 8.6137 -1.8243 -2.1844 24 1 8.1943 -0.8325 -2.1024 25 6 9.9856 -1.9888 -2.3179 26 7 10.4967 -3.1975 -2.4183 27 14 11.1062 -0.4948 -2.3550 28 1 10.9578 0.2670 -1.0889 29 1 12.5160 -0.9371 -2.5036 30 1 10.7359 0.3734 -3.5014 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 3.1300 1.4426 -0.0005 36 1 1.6766 1.9564 -0.8899 37 1 1.6766 1.9564 0.8900 38 1 2.1799 -0.3105 4.4701 39 1 3.6151 -3.5237 2.2630 40 1 4.6625 -3.3831 0.2435 41 1 2.4226 -5.1899 -1.5488 42 1 3.9287 -5.9365 -0.9635 43 1 3.2443 -5.3595 -3.8819 44 1 3.2008 -6.9592 -3.1020 45 1 5.3209 -6.6332 -4.3452 46 1 5.6215 -6.7792 -2.5971 47 1 6.9264 -4.9091 -3.5714 48 1 5.4201 -4.1624 -4.1556 49 1 5.9668 -2.1542 -2.8513 50 1 6.1291 -2.2320 -1.0805 51 1 8.1689 -3.8103 -2.2317 52 1 11.4554 -3.3126 -2.5112 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322369574.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:22 Heat of formation + Delta-G solvation = -23.614529 kcal Electronic energy + Delta-G solvation = -31388.476772 eV Core-core repulsion = 27386.324651 eV Total energy + Delta-G solvation = -4002.152121 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.49872 -41.00643 -39.34397 -37.14824 -36.41865 -35.29366 -34.14890 -33.69225 -32.83532 -31.21765 -30.32619 -28.09836 -27.06358 -26.26197 -25.90740 -24.73100 -23.47896 -22.03750 -21.88840 -21.69679 -20.93095 -19.37457 -18.96810 -18.57914 -17.79267 -17.26620 -16.73891 -16.32505 -16.00941 -15.77052 -15.63162 -15.38298 -15.34039 -15.11393 -15.06895 -14.82637 -14.56983 -14.50800 -14.09906 -14.04914 -13.69134 -13.32399 -13.10166 -12.95182 -12.80520 -12.73729 -12.67996 -12.54153 -12.32910 -12.24504 -12.14561 -11.97080 -11.92223 -11.85583 -11.63326 -11.47329 -11.36187 -11.11757 -10.95781 -10.78539 -10.73044 -10.36969 -10.02536 -8.99278 -7.96096 -5.23967 -0.58850 -0.10781 1.45954 1.47769 1.54099 1.57213 1.99929 2.54440 2.63138 2.88284 3.06848 3.20705 3.37307 3.48606 3.59540 3.74160 3.79090 3.93879 4.06090 4.11007 4.14255 4.15259 4.27263 4.38818 4.40240 4.45582 4.49914 4.53715 4.58157 4.63262 4.75421 4.85849 4.87034 4.89014 4.91083 5.04572 5.05603 5.12185 5.15107 5.18499 5.25457 5.27031 5.30619 5.32472 5.36416 5.44409 5.46654 5.49308 5.60692 5.77823 6.26303 6.38400 6.90714 7.03749 7.33698 8.09106 8.33743 9.26812 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008261 B = 0.003421 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3388.731038 B = 8181.916040 C =10087.695845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.064 4.064 3 C -0.136 4.136 4 C 0.227 3.773 5 N -0.526 5.526 6 C 0.312 3.688 7 N -0.536 5.536 8 C 0.189 3.811 9 C -0.252 4.252 10 C 0.574 3.426 11 O -0.550 6.550 12 N -0.704 5.704 13 C 0.163 3.837 14 H 0.074 0.926 15 C -0.118 4.118 16 C -0.110 4.110 17 C -0.114 4.114 18 C -0.104 4.104 19 C -0.086 4.086 20 H 0.080 0.920 21 C 0.160 3.840 22 N -0.739 5.739 23 C -0.247 4.247 24 H 0.068 0.932 25 C -0.068 4.068 26 N -0.965 5.965 27 Si 0.967 3.033 28 H -0.279 1.279 29 H -0.293 1.293 30 H -0.281 1.281 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.045 0.955 34 H 0.093 0.907 35 H 0.040 0.960 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.233 0.767 39 H 0.198 0.802 40 H 0.410 0.590 41 H 0.063 0.937 42 H 0.077 0.923 43 H 0.060 0.940 44 H 0.082 0.918 45 H 0.070 0.930 46 H 0.067 0.933 47 H 0.049 0.951 48 H 0.055 0.945 49 H 0.006 0.994 50 H 0.020 0.980 51 H 0.377 0.623 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.846 -1.466 7.682 22.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.083 4.083 3 C -0.193 4.193 4 C 0.081 3.919 5 N -0.240 5.240 6 C 0.026 3.974 7 N -0.249 5.249 8 C 0.022 3.978 9 C -0.260 4.260 10 C 0.359 3.641 11 O -0.429 6.429 12 N -0.354 5.354 13 C 0.059 3.941 14 H 0.092 0.908 15 C -0.157 4.157 16 C -0.148 4.148 17 C -0.152 4.152 18 C -0.143 4.143 19 C -0.105 4.105 20 H 0.099 0.901 21 C 0.033 3.967 22 N -0.382 5.382 23 C -0.379 4.379 24 H 0.086 0.914 25 C -0.261 4.261 26 N -0.615 5.615 27 Si 0.796 3.204 28 H -0.206 1.206 29 H -0.219 1.219 30 H -0.207 1.207 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.064 0.936 34 H 0.111 0.889 35 H 0.059 0.941 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.249 0.751 39 H 0.215 0.785 40 H 0.246 0.754 41 H 0.082 0.918 42 H 0.096 0.904 43 H 0.078 0.922 44 H 0.100 0.900 45 H 0.089 0.911 46 H 0.086 0.914 47 H 0.068 0.932 48 H 0.074 0.926 49 H 0.024 0.976 50 H 0.037 0.963 51 H 0.210 0.790 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -21.536 -0.774 7.977 22.979 hybrid contribution 1.704 0.125 -0.583 1.806 sum -19.832 -0.648 7.394 21.175 Atomic orbital electron populations 1.21607 0.91771 1.01712 1.03043 1.20502 0.98188 0.96742 0.92885 1.21754 1.00140 0.93995 1.03448 1.22039 0.86372 0.89066 0.94451 1.68359 1.20892 1.36029 0.98676 1.25920 0.86049 0.87047 0.98403 1.68547 1.16454 1.11337 1.28576 1.23887 0.89052 0.98957 0.85923 1.21630 1.08028 0.99889 0.96458 1.17838 0.82096 0.77932 0.86207 1.90743 1.43398 1.61358 1.47423 1.45990 1.20094 1.52108 1.17209 1.20919 0.94436 0.94461 0.84306 0.90816 1.21837 1.00297 0.94563 0.98969 1.21470 0.95950 1.01186 0.96221 1.21542 0.95431 0.95786 1.02407 1.21434 1.00412 0.96936 0.95476 1.21449 0.93578 0.96175 0.99287 0.90120 1.20763 0.83520 0.95388 0.96985 1.42491 1.01588 1.05680 1.88421 1.19512 0.89037 0.88275 1.41099 0.91399 1.25452 0.98143 0.98980 1.03484 1.69781 1.11534 1.21600 1.58607 0.85316 0.77896 0.79127 0.78055 1.20564 1.21892 1.20679 0.91747 0.90484 0.93565 0.88907 0.94090 0.90543 0.91107 0.75085 0.78550 0.75420 0.91839 0.90443 0.92150 0.89953 0.91119 0.91391 0.93182 0.92619 0.97638 0.96259 0.79030 0.93925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.44 9.18 71.98 0.66 -1.78 16 2 C -0.06 -1.47 2.72 -11.54 -0.03 -1.50 16 3 C -0.14 -2.78 9.02 71.98 0.65 -2.13 16 4 C 0.23 5.39 5.55 42.92 0.24 5.63 16 5 N -0.53 -11.37 9.90 -187.05 -1.85 -13.22 16 6 C 0.31 5.68 12.27 180.84 2.22 7.89 16 7 N -0.54 -10.68 10.42 -198.98 -2.07 -12.75 16 8 C 0.19 3.62 10.64 85.07 0.90 4.52 16 9 C -0.25 -5.78 5.81 -19.91 -0.12 -5.89 16 10 C 0.57 14.36 7.00 86.78 0.61 14.97 16 11 O -0.55 -16.48 14.16 -3.88 -0.05 -16.53 16 12 N -0.70 -15.97 4.24 -445.44 -1.89 -17.85 16 13 C 0.16 3.99 1.90 44.99 0.09 4.08 16 14 H 0.07 2.10 7.58 -2.39 -0.02 2.08 16 15 C -0.12 -2.36 5.49 30.59 0.17 -2.19 16 16 C -0.11 -2.07 5.92 30.59 0.18 -1.89 16 17 C -0.11 -2.46 5.92 30.59 0.18 -2.28 16 18 C -0.10 -3.01 5.08 30.61 0.16 -2.85 16 19 C -0.09 -2.47 1.80 -10.78 -0.02 -2.49 16 20 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 21 C 0.16 6.17 5.56 86.38 0.48 6.65 16 22 N -0.74 -36.37 5.33 -343.45 -1.83 -38.20 16 23 C -0.25 -13.72 9.99 84.03 0.84 -12.88 16 24 H 0.07 3.69 7.83 -2.91 -0.02 3.66 16 25 C -0.07 -3.85 5.50 84.86 0.47 -3.39 16 26 N -0.96 -57.88 13.06 21.65 0.28 -57.60 16 27 Si 0.97 45.86 29.55 68.60 2.03 47.89 16 28 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 29 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 30 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 31 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.09 2.50 5.30 -2.39 -0.01 2.49 16 35 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.07 1.38 7.92 -2.39 -0.02 1.36 16 38 H 0.23 2.37 8.06 -2.91 -0.02 2.34 16 39 H 0.20 2.57 7.76 -2.91 -0.02 2.55 16 40 H 0.41 8.16 7.71 -92.71 -0.71 7.44 16 41 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 45 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 46 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.05 1.75 7.18 -2.38 -0.02 1.73 16 48 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 49 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 50 H 0.02 0.75 7.31 -2.39 -0.02 0.73 16 51 H 0.38 19.49 6.85 -92.71 -0.64 18.86 16 52 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -68.37 413.14 1.86 -66.51 By element: Atomic # 1 Polarization: 37.71 SS G_CDS: -0.42 Total: 37.29 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: 7.67 Total: 4.47 kcal Atomic # 7 Polarization: -132.26 SS G_CDS: -7.36 Total: -139.63 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -0.05 Total: -16.53 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -68.37 1.86 -66.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322369574.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.899 kcal (2) G-P(sol) polarization free energy of solvation -68.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds