Wall clock time and date at job start Wed Apr 1 2020 05:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47417 * 2 1 4 4 C 1.52999 * 109.47275 * 239.99900 * 2 1 3 5 5 C 1.50699 * 109.47116 * 119.99883 * 2 1 3 6 6 N 1.31866 * 118.95411 * 240.27378 * 5 2 1 7 7 C 1.32151 * 120.96339 * 180.29383 * 6 5 2 8 8 C 1.39948 * 118.92494 * 359.43678 * 7 6 5 9 9 C 1.47830 * 120.93820 * 180.29659 * 8 7 6 10 10 O 1.21552 * 120.00066 * 37.21356 * 9 8 7 11 11 N 1.34777 * 120.00342 * 217.21461 * 9 8 7 12 12 C 1.46926 * 120.62630 * 6.25101 * 11 9 8 13 13 C 1.53628 * 108.54176 * 126.37230 * 12 11 9 14 14 C 1.53039 * 109.24210 * 54.85621 * 13 12 11 15 15 C 1.53037 * 109.53520 * 298.50748 * 14 13 12 16 16 C 1.46927 * 120.63603 * 186.53299 * 11 9 8 17 17 H 1.09002 * 109.59018 * 113.79264 * 16 11 9 18 18 C 1.53006 * 109.58163 * 353.51141 * 16 11 9 19 19 N 1.46500 * 109.46984 * 69.28171 * 18 16 11 20 20 C 1.36935 * 119.99842 * 175.31898 * 19 18 16 21 21 H 1.08001 * 120.00403 * 0.02562 * 20 19 18 22 22 C 1.38817 * 119.99737 * 180.02562 * 20 19 18 23 23 N 1.31618 * 119.99618 * 180.02562 * 22 20 19 24 24 Si 1.86794 * 120.00090 * 0.02562 * 22 20 19 25 25 H 1.48494 * 109.47216 * 90.00298 * 24 22 20 26 26 H 1.48509 * 109.46964 * 210.00000 * 24 22 20 27 27 H 1.48497 * 109.47150 * 329.99652 * 24 22 20 28 28 C 1.39942 * 118.12199 * 0.28253 * 8 7 6 29 29 N 1.31873 * 118.95015 * 60.00154 * 5 2 1 30 30 H 1.09001 * 109.47177 * 300.00283 * 1 2 3 31 31 H 1.09005 * 109.46993 * 59.99816 * 1 2 3 32 32 H 1.08995 * 109.46903 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47344 * 179.97438 * 3 2 1 34 34 H 1.09005 * 109.47189 * 300.00064 * 3 2 1 35 35 H 1.09001 * 109.47178 * 59.99718 * 3 2 1 36 36 H 1.08997 * 109.47107 * 300.00711 * 4 2 1 37 37 H 1.09005 * 109.46878 * 60.00213 * 4 2 1 38 38 H 1.08998 * 109.47745 * 180.02562 * 4 2 1 39 39 H 1.08006 * 120.53446 * 179.71911 * 7 6 5 40 40 H 1.09009 * 109.58742 * 246.20050 * 12 11 9 41 41 H 1.08999 * 109.58900 * 6.62833 * 12 11 9 42 42 H 1.08998 * 109.62964 * 294.85814 * 13 12 11 43 43 H 1.09000 * 109.45512 * 174.73787 * 13 12 11 44 44 H 1.09006 * 109.45606 * 178.49127 * 14 13 12 45 45 H 1.08997 * 109.46102 * 58.53034 * 14 13 12 46 46 H 1.09002 * 109.50163 * 301.41869 * 15 14 13 47 47 H 1.09001 * 109.52498 * 181.33215 * 15 14 13 48 48 H 1.09005 * 109.46866 * 189.27979 * 18 16 11 49 49 H 1.08994 * 109.47340 * 309.28027 * 18 16 11 50 50 H 0.97001 * 120.00510 * 355.32378 * 19 18 16 51 51 H 0.97003 * 120.00282 * 179.97438 * 23 22 20 52 52 H 1.08006 * 120.53924 * 180.02562 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 7 2.7845 -0.0482 2.0875 7 6 3.2512 -0.6337 3.1765 8 6 2.9251 -1.9732 3.4174 9 6 3.4174 -2.6699 4.6247 10 8 3.4951 -2.0739 5.6812 11 7 3.7803 -3.9660 4.5539 12 6 3.8225 -4.6619 3.2606 13 6 5.2119 -5.2955 3.0919 14 6 5.5075 -6.1911 4.2972 15 6 5.5156 -5.3460 5.5730 16 6 4.1351 -4.7116 5.7692 17 1 3.3960 -5.4926 5.9477 18 6 4.1713 -3.7569 6.9643 19 7 2.8105 -3.3124 7.2756 20 6 2.5817 -2.5242 8.3717 21 1 3.4043 -2.2299 9.0065 22 6 1.2921 -2.1034 8.6670 23 7 1.0723 -1.3454 9.7203 24 14 -0.1309 -2.6131 7.5695 25 1 -0.7021 -3.8923 8.0616 26 1 -1.1782 -1.5605 7.5962 27 1 0.3563 -2.7912 6.1780 28 6 2.1194 -2.6342 2.4834 29 7 1.7012 -1.9729 1.4186 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1301 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7489 -1.2493 37 1 1.6767 -0.2074 -2.1392 38 1 3.1300 -0.7217 -1.2491 39 1 3.8704 -0.0860 3.8715 40 1 3.0584 -5.4391 3.2386 41 1 3.6445 -3.9487 2.4559 42 1 5.9664 -4.5115 3.0273 43 1 5.2299 -5.8937 2.1810 44 1 6.4814 -6.6635 4.1683 45 1 4.7387 -6.9598 4.3756 46 1 6.2673 -4.5616 5.4851 47 1 5.7495 -5.9799 6.4284 48 1 4.5919 -4.2719 7.8281 49 1 4.7890 -2.8926 6.7204 50 1 2.0716 -3.5764 6.7053 51 1 0.1713 -1.0511 9.9264 52 1 1.8435 -3.6680 2.6308 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328674566.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:43 Heat of formation + Delta-G solvation = 64.249833 kcal Electronic energy + Delta-G solvation = -32332.489915 eV Core-core repulsion = 28334.147879 eV Total energy + Delta-G solvation = -3998.342036 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -41.52341 -40.12023 -37.27312 -36.79681 -34.78761 -33.99138 -32.93505 -32.18022 -31.00423 -30.29968 -27.52922 -27.48552 -26.69811 -25.18831 -24.67117 -24.27281 -22.52520 -21.70630 -20.78340 -20.14051 -19.43721 -17.95615 -17.39808 -16.78086 -16.65593 -15.71876 -15.38429 -14.96592 -14.79811 -14.59873 -14.33445 -14.27687 -14.11479 -13.90450 -13.75268 -13.64269 -13.55963 -13.08154 -12.64489 -12.50659 -12.45567 -12.43087 -12.36751 -11.94212 -11.82939 -11.80233 -11.38385 -11.19617 -11.17785 -11.14332 -11.09157 -10.99063 -10.90575 -10.81105 -10.59363 -10.34205 -10.06608 -9.48177 -9.46168 -9.32017 -8.87759 -8.59261 -8.32844 -6.89959 -5.62737 -2.88519 0.52387 0.98368 3.03115 3.06518 3.43127 3.45118 3.50515 3.60778 3.72194 3.97926 4.42240 4.53697 4.62064 4.69580 4.71129 4.73643 4.76434 4.78954 4.84449 4.95402 5.00107 5.20356 5.22975 5.29421 5.41316 5.44117 5.44926 5.57880 5.60556 5.65469 5.66342 5.69751 5.71658 5.74138 5.75358 5.77974 5.84702 5.92303 5.94802 5.96293 6.06720 6.08281 6.23188 6.27127 6.28471 6.46568 6.74419 6.82932 7.09624 7.62387 7.96236 8.13012 8.53810 8.58405 9.35688 10.08857 10.28775 11.56888 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009094 B = 0.004384 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3078.049672 B = 6386.002828 C = 8540.192201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.000 4.000 3 C -0.129 4.129 4 C -0.134 4.134 5 C 0.331 3.669 6 N -0.512 5.512 7 C 0.197 3.803 8 C -0.224 4.224 9 C 0.521 3.479 10 O -0.432 6.432 11 N -0.611 5.611 12 C 0.100 3.900 13 C -0.133 4.133 14 C -0.118 4.118 15 C -0.127 4.127 16 C 0.140 3.860 17 H 0.071 0.929 18 C 0.162 3.838 19 N -0.723 5.723 20 C -0.210 4.210 21 H 0.088 0.912 22 C -0.002 4.002 23 N -0.940 5.940 24 Si 0.882 3.118 25 H -0.288 1.288 26 H -0.294 1.294 27 H -0.284 1.284 28 C 0.170 3.830 29 N -0.516 5.516 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.053 0.947 39 H 0.177 0.823 40 H 0.068 0.932 41 H 0.081 0.919 42 H 0.066 0.934 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.068 0.932 47 H 0.076 0.924 48 H 0.027 0.973 49 H 0.051 0.949 50 H 0.355 0.645 51 H 0.256 0.744 52 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.677 -5.750 -23.787 25.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.002 4.002 3 C -0.187 4.187 4 C -0.192 4.192 5 C 0.064 3.936 6 N -0.225 5.225 7 C 0.031 3.969 8 C -0.232 4.232 9 C 0.305 3.695 10 O -0.300 6.300 11 N -0.349 5.349 12 C -0.023 4.023 13 C -0.171 4.171 14 C -0.155 4.155 15 C -0.165 4.165 16 C 0.037 3.963 17 H 0.089 0.911 18 C 0.035 3.965 19 N -0.366 5.366 20 C -0.341 4.341 21 H 0.106 0.894 22 C -0.196 4.196 23 N -0.589 5.589 24 Si 0.714 3.286 25 H -0.215 1.215 26 H -0.221 1.221 27 H -0.210 1.210 28 C 0.003 3.997 29 N -0.229 5.229 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.194 0.806 40 H 0.086 0.914 41 H 0.100 0.900 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.087 0.913 47 H 0.095 0.905 48 H 0.044 0.956 49 H 0.069 0.931 50 H 0.187 0.813 51 H 0.066 0.934 52 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 6.424 -4.769 -23.746 25.058 hybrid contribution -0.930 -0.868 0.059 1.274 sum 5.494 -5.637 -23.687 24.961 Atomic orbital electron populations 1.21853 0.92479 1.02992 1.02171 1.19407 0.96317 0.95157 0.89352 1.21724 1.01762 0.93318 1.01866 1.21831 1.00925 1.00977 0.95501 1.23222 0.88921 0.87098 0.94342 1.68333 1.11774 1.38587 1.03771 1.23440 0.91757 0.89978 0.91733 1.22010 1.04197 0.98044 0.98956 1.17871 0.81613 0.82497 0.87533 1.91239 1.48077 1.64555 1.26135 1.47767 1.69696 1.10127 1.07327 1.22066 0.97602 0.96744 0.85902 1.21977 0.97058 0.99536 0.98523 1.21504 1.01721 0.97809 0.94507 1.21897 0.97163 0.99543 0.97947 1.21606 0.95574 0.94429 0.84663 0.91135 1.20928 0.89450 0.94531 0.91547 1.42651 1.02735 1.60719 1.30543 1.19018 0.94180 1.21257 0.99614 0.89414 1.24560 0.96804 1.00400 0.97827 1.69690 1.20305 1.40571 1.28380 0.86562 0.83686 0.77717 0.80631 1.21480 1.22068 1.21049 1.23586 0.89144 0.99760 0.87223 1.68157 1.23079 1.09693 1.21990 0.92604 0.91546 0.91421 0.91932 0.92379 0.91808 0.91439 0.91591 0.92772 0.80557 0.91384 0.90049 0.91521 0.91067 0.91785 0.91790 0.91296 0.90533 0.95557 0.93098 0.81265 0.93394 0.81127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 8.37 37.16 0.31 -1.03 16 2 C 0.00 0.00 0.92 -155.66 -0.14 -0.15 16 3 C -0.13 -1.25 7.66 37.16 0.28 -0.97 16 4 C -0.13 -1.16 8.37 37.16 0.31 -0.85 16 5 C 0.33 4.46 6.25 -157.07 -0.98 3.48 16 6 N -0.51 -7.47 8.98 -10.39 -0.09 -7.56 16 7 C 0.20 3.00 10.94 -16.77 -0.18 2.82 16 8 C -0.22 -3.46 5.23 -104.69 -0.55 -4.00 16 9 C 0.52 9.09 6.77 -12.34 -0.08 9.00 16 10 O -0.43 -9.58 10.74 5.32 0.06 -9.53 16 11 N -0.61 -8.73 2.97 -166.06 -0.49 -9.23 16 12 C 0.10 1.03 4.89 -3.48 -0.02 1.01 16 13 C -0.13 -1.14 6.10 -26.38 -0.16 -1.30 16 14 C -0.12 -1.04 5.88 -26.69 -0.16 -1.20 16 15 C -0.13 -1.43 5.37 -26.61 -0.14 -1.57 16 16 C 0.14 2.09 2.92 -67.60 -0.20 1.89 16 17 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 18 C 0.16 3.23 4.87 -4.04 -0.02 3.21 16 19 N -0.72 -17.90 3.05 -59.91 -0.18 -18.08 16 20 C -0.21 -6.23 10.19 -15.06 -0.15 -6.39 16 21 H 0.09 2.79 8.06 -52.49 -0.42 2.37 16 22 C 0.00 -0.05 5.50 -17.43 -0.10 -0.14 16 23 N -0.94 -30.91 13.97 55.49 0.78 -30.13 16 24 Si 0.88 23.74 27.74 -169.99 -4.71 19.02 16 25 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 26 H -0.29 -8.06 7.11 56.52 0.40 -7.66 16 27 H -0.28 -7.37 6.52 56.52 0.37 -7.00 16 28 C 0.17 2.31 8.68 -16.78 -0.15 2.16 16 29 N -0.52 -7.01 9.77 -10.39 -0.10 -7.11 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.70 8.01 -51.93 -0.42 0.28 16 33 H 0.06 0.63 8.04 -51.93 -0.42 0.21 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.70 8.03 -51.93 -0.42 0.28 16 36 H 0.07 0.61 8.01 -51.93 -0.42 0.19 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.18 2.55 8.06 -52.48 -0.42 2.13 16 40 H 0.07 0.61 8.10 -51.92 -0.42 0.19 16 41 H 0.08 0.81 4.62 -51.93 -0.24 0.57 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 47 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.03 0.53 8.13 -51.93 -0.42 0.10 16 49 H 0.05 1.11 6.28 -51.93 -0.33 0.78 16 50 H 0.35 8.80 4.94 -40.82 -0.20 8.60 16 51 H 0.26 8.06 8.31 -40.82 -0.34 7.72 16 52 H 0.17 1.95 6.38 -52.48 -0.34 1.62 16 LS Contribution 399.51 15.07 6.02 6.02 Total: -1.00 -35.62 399.51 -9.55 -45.17 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -8.70 Total: 5.45 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: -2.12 Total: 5.96 kcal Atomic # 7 Polarization: -72.01 SS G_CDS: -0.09 Total: -72.11 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.06 Total: -9.53 kcal Atomic # 14 Polarization: 23.74 SS G_CDS: -4.71 Total: 19.02 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.62 -9.55 -45.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328674566.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.423 kcal (2) G-P(sol) polarization free energy of solvation -35.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds