Wall clock time and date at job start Wed Apr 1 2020 05:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47417 * 2 1 4 4 C 1.52999 * 109.47275 * 239.99900 * 2 1 3 5 5 C 1.50699 * 109.47116 * 119.99883 * 2 1 3 6 6 N 1.31866 * 118.95411 * 240.27378 * 5 2 1 7 7 C 1.32151 * 120.96339 * 180.29383 * 6 5 2 8 8 C 1.39948 * 118.92494 * 359.43678 * 7 6 5 9 9 C 1.47830 * 120.93820 * 180.29659 * 8 7 6 10 10 O 1.21552 * 120.00066 * 37.21356 * 9 8 7 11 11 N 1.34777 * 120.00342 * 217.21461 * 9 8 7 12 12 C 1.46926 * 120.62630 * 6.25101 * 11 9 8 13 13 C 1.53628 * 108.54176 * 126.37230 * 12 11 9 14 14 C 1.53039 * 109.24210 * 54.85621 * 13 12 11 15 15 C 1.53037 * 109.53520 * 298.50748 * 14 13 12 16 16 C 1.46927 * 120.63603 * 186.53299 * 11 9 8 17 17 H 1.09002 * 109.59018 * 113.79264 * 16 11 9 18 18 C 1.53006 * 109.58163 * 353.51141 * 16 11 9 19 19 N 1.46500 * 109.46984 * 69.28171 * 18 16 11 20 20 C 1.36935 * 119.99842 * 175.31898 * 19 18 16 21 21 H 1.08001 * 120.00403 * 0.02562 * 20 19 18 22 22 C 1.38817 * 119.99737 * 180.02562 * 20 19 18 23 23 N 1.31618 * 119.99618 * 180.02562 * 22 20 19 24 24 Si 1.86794 * 120.00090 * 0.02562 * 22 20 19 25 25 H 1.48494 * 109.47216 * 90.00298 * 24 22 20 26 26 H 1.48509 * 109.46964 * 210.00000 * 24 22 20 27 27 H 1.48497 * 109.47150 * 329.99652 * 24 22 20 28 28 C 1.39942 * 118.12199 * 0.28253 * 8 7 6 29 29 N 1.31873 * 118.95015 * 60.00154 * 5 2 1 30 30 H 1.09001 * 109.47177 * 300.00283 * 1 2 3 31 31 H 1.09005 * 109.46993 * 59.99816 * 1 2 3 32 32 H 1.08995 * 109.46903 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47344 * 179.97438 * 3 2 1 34 34 H 1.09005 * 109.47189 * 300.00064 * 3 2 1 35 35 H 1.09001 * 109.47178 * 59.99718 * 3 2 1 36 36 H 1.08997 * 109.47107 * 300.00711 * 4 2 1 37 37 H 1.09005 * 109.46878 * 60.00213 * 4 2 1 38 38 H 1.08998 * 109.47745 * 180.02562 * 4 2 1 39 39 H 1.08006 * 120.53446 * 179.71911 * 7 6 5 40 40 H 1.09009 * 109.58742 * 246.20050 * 12 11 9 41 41 H 1.08999 * 109.58900 * 6.62833 * 12 11 9 42 42 H 1.08998 * 109.62964 * 294.85814 * 13 12 11 43 43 H 1.09000 * 109.45512 * 174.73787 * 13 12 11 44 44 H 1.09006 * 109.45606 * 178.49127 * 14 13 12 45 45 H 1.08997 * 109.46102 * 58.53034 * 14 13 12 46 46 H 1.09002 * 109.50163 * 301.41869 * 15 14 13 47 47 H 1.09001 * 109.52498 * 181.33215 * 15 14 13 48 48 H 1.09005 * 109.46866 * 189.27979 * 18 16 11 49 49 H 1.08994 * 109.47340 * 309.28027 * 18 16 11 50 50 H 0.97001 * 120.00510 * 355.32378 * 19 18 16 51 51 H 0.97003 * 120.00282 * 179.97438 * 23 22 20 52 52 H 1.08006 * 120.53924 * 180.02562 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 7 2.7845 -0.0482 2.0875 7 6 3.2512 -0.6337 3.1765 8 6 2.9251 -1.9732 3.4174 9 6 3.4174 -2.6699 4.6247 10 8 3.4951 -2.0739 5.6812 11 7 3.7803 -3.9660 4.5539 12 6 3.8225 -4.6619 3.2606 13 6 5.2119 -5.2955 3.0919 14 6 5.5075 -6.1911 4.2972 15 6 5.5156 -5.3460 5.5730 16 6 4.1351 -4.7116 5.7692 17 1 3.3960 -5.4926 5.9477 18 6 4.1713 -3.7569 6.9643 19 7 2.8105 -3.3124 7.2756 20 6 2.5817 -2.5242 8.3717 21 1 3.4043 -2.2299 9.0065 22 6 1.2921 -2.1034 8.6670 23 7 1.0723 -1.3454 9.7203 24 14 -0.1309 -2.6131 7.5695 25 1 -0.7021 -3.8923 8.0616 26 1 -1.1782 -1.5605 7.5962 27 1 0.3563 -2.7912 6.1780 28 6 2.1194 -2.6342 2.4834 29 7 1.7012 -1.9729 1.4186 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1301 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7489 -1.2493 37 1 1.6767 -0.2074 -2.1392 38 1 3.1300 -0.7217 -1.2491 39 1 3.8704 -0.0860 3.8715 40 1 3.0584 -5.4391 3.2386 41 1 3.6445 -3.9487 2.4559 42 1 5.9664 -4.5115 3.0273 43 1 5.2299 -5.8937 2.1810 44 1 6.4814 -6.6635 4.1683 45 1 4.7387 -6.9598 4.3756 46 1 6.2673 -4.5616 5.4851 47 1 5.7495 -5.9799 6.4284 48 1 4.5919 -4.2719 7.8281 49 1 4.7890 -2.8926 6.7204 50 1 2.0716 -3.5764 6.7053 51 1 0.1713 -1.0511 9.9264 52 1 1.8435 -3.6680 2.6308 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328674566.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:42 Heat of formation + Delta-G solvation = 41.175594 kcal Electronic energy + Delta-G solvation = -32333.490489 eV Core-core repulsion = 28334.147879 eV Total energy + Delta-G solvation = -3999.342610 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.65543 -41.33195 -38.36739 -37.77686 -36.53676 -35.12690 -34.19019 -33.76444 -32.35093 -31.78254 -28.31538 -28.19679 -28.07242 -26.52489 -25.72473 -25.42316 -24.06722 -23.12887 -21.91449 -21.04937 -20.63962 -19.70620 -18.83026 -17.95449 -17.68806 -16.90486 -16.71770 -16.39614 -15.96461 -15.80768 -15.64642 -15.60560 -15.22375 -15.01689 -14.83337 -14.62517 -14.59062 -14.54591 -14.18673 -13.84619 -13.81038 -13.43166 -13.18798 -13.12667 -12.93094 -12.82614 -12.70568 -12.58409 -12.31434 -12.13504 -12.07468 -12.03351 -11.97626 -11.87475 -11.86090 -11.75332 -11.49467 -11.40945 -11.00348 -10.64294 -10.43131 -10.06872 -9.63732 -8.96444 -7.98622 -5.21699 -0.60931 -0.15229 1.24396 1.30708 1.36221 1.76474 1.89095 2.47014 2.53810 2.67325 2.91194 3.30803 3.34055 3.40910 3.62931 3.73300 3.82682 3.85745 3.96323 3.97374 3.98262 4.05342 4.26283 4.28634 4.33058 4.33834 4.54794 4.55385 4.64575 4.75347 4.78244 4.84476 4.87147 4.90753 4.95012 4.98096 4.99665 5.01183 5.08554 5.12347 5.13404 5.23556 5.29471 5.30094 5.35070 5.46305 5.49505 5.69360 5.72908 5.78638 6.24511 6.40385 6.85169 7.13113 7.26154 7.92065 8.09879 9.25050 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009094 B = 0.004384 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3078.049672 B = 6386.002828 C = 8540.192201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.005 4.005 3 C -0.125 4.125 4 C -0.128 4.128 5 C 0.329 3.671 6 N -0.523 5.523 7 C 0.189 3.811 8 C -0.242 4.242 9 C 0.528 3.472 10 O -0.497 6.497 11 N -0.604 5.604 12 C 0.093 3.907 13 C -0.128 4.128 14 C -0.112 4.112 15 C -0.120 4.120 16 C 0.146 3.854 17 H 0.081 0.919 18 C 0.162 3.838 19 N -0.724 5.724 20 C -0.193 4.193 21 H 0.049 0.951 22 C -0.073 4.073 23 N -0.993 5.993 24 Si 0.953 3.047 25 H -0.272 1.272 26 H -0.303 1.303 27 H -0.270 1.270 28 C 0.182 3.818 29 N -0.515 5.515 30 H 0.038 0.962 31 H 0.093 0.907 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.084 0.916 35 H 0.044 0.956 36 H 0.064 0.936 37 H 0.090 0.910 38 H 0.050 0.950 39 H 0.171 0.829 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.055 0.945 43 H 0.101 0.899 44 H 0.083 0.917 45 H 0.077 0.923 46 H 0.058 0.942 47 H 0.086 0.914 48 H 0.024 0.976 49 H 0.029 0.971 50 H 0.356 0.644 51 H 0.253 0.747 52 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.250 -8.463 -28.311 30.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.007 4.007 3 C -0.183 4.183 4 C -0.186 4.186 5 C 0.062 3.938 6 N -0.236 5.236 7 C 0.023 3.977 8 C -0.249 4.249 9 C 0.313 3.687 10 O -0.371 6.371 11 N -0.340 5.340 12 C -0.029 4.029 13 C -0.166 4.166 14 C -0.149 4.149 15 C -0.159 4.159 16 C 0.043 3.957 17 H 0.099 0.901 18 C 0.036 3.964 19 N -0.367 5.367 20 C -0.325 4.325 21 H 0.067 0.933 22 C -0.263 4.263 23 N -0.646 5.646 24 Si 0.783 3.217 25 H -0.198 1.198 26 H -0.230 1.230 27 H -0.196 1.196 28 C 0.015 3.985 29 N -0.228 5.228 30 H 0.057 0.943 31 H 0.112 0.888 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.103 0.897 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.109 0.891 38 H 0.069 0.931 39 H 0.188 0.812 40 H 0.112 0.888 41 H 0.103 0.897 42 H 0.074 0.926 43 H 0.119 0.881 44 H 0.101 0.899 45 H 0.095 0.905 46 H 0.077 0.923 47 H 0.105 0.895 48 H 0.042 0.958 49 H 0.047 0.953 50 H 0.189 0.811 51 H 0.061 0.939 52 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 6.050 -7.557 -28.361 29.968 hybrid contribution -0.636 0.019 1.318 1.463 sum 5.413 -7.538 -27.044 28.592 Atomic orbital electron populations 1.21848 0.91729 1.02878 1.02691 1.19655 0.96823 0.95387 0.88835 1.21702 1.01313 0.93020 1.02266 1.21803 1.00694 1.00863 0.95218 1.23994 0.87690 0.87304 0.94767 1.68412 1.12528 1.38815 1.03868 1.23473 0.91899 0.90263 0.92059 1.21882 1.05840 0.98164 0.99052 1.18249 0.80066 0.83132 0.87256 1.91231 1.51191 1.66180 1.28451 1.47925 1.67880 1.09302 1.08919 1.22427 0.99779 0.97150 0.83516 1.21971 0.95324 0.99472 0.99807 1.21498 1.03363 0.97471 0.92601 1.21868 0.94152 0.99626 1.00272 1.21527 0.98289 0.93035 0.82881 0.90127 1.20969 0.86772 0.94736 0.93907 1.42533 1.04684 1.60256 1.29247 1.18962 0.92976 1.20519 1.00057 0.93317 1.25303 0.99733 1.01489 0.99745 1.69880 1.20628 1.43218 1.30917 0.85411 0.79661 0.77421 0.79221 1.19814 1.23037 1.19612 1.23965 0.87665 1.00603 0.86277 1.68298 1.22979 1.09706 1.21845 0.94322 0.88823 0.91811 0.92605 0.89733 0.93637 0.91648 0.89113 0.93103 0.81176 0.88792 0.89670 0.92587 0.88050 0.89866 0.90475 0.92339 0.89548 0.95844 0.95301 0.81099 0.93865 0.78558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.30 8.37 71.98 0.60 -1.70 16 2 C 0.00 -0.09 0.92 -52.93 -0.05 -0.14 16 3 C -0.13 -2.22 7.66 71.98 0.55 -1.67 16 4 C -0.13 -1.80 8.37 71.98 0.60 -1.20 16 5 C 0.33 8.38 6.25 138.70 0.87 9.25 16 6 N -0.52 -15.16 8.98 -186.79 -1.68 -16.84 16 7 C 0.19 5.86 10.94 85.06 0.93 6.79 16 8 C -0.24 -7.31 5.23 -19.91 -0.10 -7.41 16 9 C 0.53 18.36 6.77 86.78 0.59 18.95 16 10 O -0.50 -22.97 10.74 -3.88 -0.04 -23.01 16 11 N -0.60 -16.21 2.97 -797.56 -2.37 -18.58 16 12 C 0.09 1.55 4.89 86.51 0.42 1.97 16 13 C -0.13 -1.66 6.10 30.82 0.19 -1.47 16 14 C -0.11 -1.49 5.88 30.62 0.18 -1.31 16 15 C -0.12 -2.45 5.37 30.67 0.16 -2.28 16 16 C 0.15 4.12 2.92 44.98 0.13 4.25 16 17 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 18 C 0.16 6.63 4.87 86.38 0.42 7.05 16 19 N -0.72 -36.68 3.05 -343.44 -1.05 -37.72 16 20 C -0.19 -12.00 10.19 84.04 0.86 -11.15 16 21 H 0.05 3.33 8.06 -2.91 -0.02 3.30 16 22 C -0.07 -4.67 5.50 84.86 0.47 -4.20 16 23 N -0.99 -68.39 13.97 21.65 0.30 -68.09 16 24 Si 0.95 50.33 27.74 68.60 1.90 52.23 16 25 H -0.27 -13.55 7.11 99.48 0.71 -12.84 16 26 H -0.30 -16.31 7.11 99.48 0.71 -15.61 16 27 H -0.27 -13.43 6.52 99.48 0.65 -12.78 16 28 C 0.18 4.52 8.68 85.06 0.74 5.26 16 29 N -0.52 -12.82 9.77 -186.80 -1.83 -14.64 16 30 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.06 1.15 8.01 -2.39 -0.02 1.13 16 33 H 0.05 1.06 8.04 -2.39 -0.02 1.04 16 34 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 35 H 0.04 0.97 8.03 -2.39 -0.02 0.95 16 36 H 0.06 0.96 8.01 -2.39 -0.02 0.95 16 37 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 38 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.17 5.31 8.06 -2.91 -0.02 5.29 16 40 H 0.09 1.18 8.10 -2.38 -0.02 1.16 16 41 H 0.09 1.40 4.62 -2.39 -0.01 1.39 16 42 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 45 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 48 H 0.02 0.97 8.13 -2.38 -0.02 0.95 16 49 H 0.03 1.33 6.28 -2.39 -0.02 1.32 16 50 H 0.36 17.60 4.94 -92.71 -0.46 17.14 16 51 H 0.25 16.62 8.31 -92.71 -0.77 15.85 16 52 H 0.20 3.74 6.38 -2.91 -0.02 3.73 16 Total: -1.00 -83.03 399.51 3.20 -79.83 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: 0.39 Total: 25.83 kcal Atomic # 6 Polarization: 13.44 SS G_CDS: 7.56 Total: 20.99 kcal Atomic # 7 Polarization: -149.26 SS G_CDS: -6.61 Total: -155.87 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.04 Total: -23.01 kcal Atomic # 14 Polarization: 50.33 SS G_CDS: 1.90 Total: 52.23 kcal Total: -83.03 3.20 -79.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328674566.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.006 kcal (2) G-P(sol) polarization free energy of solvation -83.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds