Wall clock time and date at job start Wed Apr 1 2020 06:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47550 * 2 1 4 4 C 1.53004 * 109.46858 * 240.00049 * 2 1 3 5 5 C 1.50695 * 109.46857 * 120.00412 * 2 1 3 6 6 N 1.31870 * 118.95843 * 59.99699 * 5 2 1 7 7 C 1.32147 * 120.96950 * 179.97438 * 6 5 2 8 8 C 1.39949 * 118.92445 * 0.02562 * 7 6 5 9 9 C 1.47831 * 120.93460 * 180.02562 * 8 7 6 10 10 O 1.21544 * 120.00498 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99595 * 180.02562 * 9 8 7 12 12 C 1.46500 * 120.00217 * 180.02562 * 11 9 8 13 13 H 1.09003 * 110.67458 * 36.77410 * 12 11 9 14 14 C 1.54891 * 110.75512 * 273.54367 * 12 11 9 15 15 C 1.54263 * 104.19869 * 203.74014 * 14 12 11 16 16 C 1.53873 * 106.59601 * 23.60807 * 15 14 12 17 17 H 1.09004 * 110.03752 * 240.66561 * 16 15 14 18 18 C 1.53005 * 110.03537 * 119.28547 * 16 15 14 19 19 N 1.46505 * 109.46904 * 67.09058 * 18 16 15 20 20 C 1.36931 * 119.99788 * 180.02562 * 19 18 16 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 18 22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 18 23 23 N 1.31614 * 119.99888 * 0.27479 * 22 20 19 24 24 Si 1.86803 * 119.99862 * 180.27671 * 22 20 19 25 25 H 1.48498 * 109.47174 * 90.00121 * 24 22 20 26 26 H 1.48501 * 109.47062 * 210.00072 * 24 22 20 27 27 H 1.48504 * 109.46913 * 329.99871 * 24 22 20 28 28 C 1.54269 * 106.64467 * 359.97438 * 16 15 14 29 29 C 1.39945 * 118.12166 * 0.26760 * 8 7 6 30 30 N 1.31876 * 118.94791 * 239.97155 * 5 2 1 31 31 H 1.08997 * 109.47145 * 300.00100 * 1 2 3 32 32 H 1.09007 * 109.47199 * 59.99917 * 1 2 3 33 33 H 1.08999 * 109.47390 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47691 * 180.02562 * 3 2 1 35 35 H 1.09007 * 109.46938 * 300.00243 * 3 2 1 36 36 H 1.08997 * 109.46978 * 59.99798 * 3 2 1 37 37 H 1.08999 * 109.47182 * 300.00204 * 4 2 1 38 38 H 1.08996 * 109.47246 * 60.00544 * 4 2 1 39 39 H 1.09005 * 109.47085 * 180.02562 * 4 2 1 40 40 H 1.07997 * 120.53141 * 179.97438 * 7 6 5 41 41 H 0.97006 * 120.00005 * 359.97438 * 11 9 8 42 42 H 1.09004 * 110.48971 * 85.06152 * 14 12 11 43 43 H 1.09004 * 110.59447 * 322.47627 * 14 12 11 44 44 H 1.08997 * 110.03354 * 264.32662 * 15 14 12 45 45 H 1.08997 * 110.07501 * 142.91623 * 15 14 12 46 46 H 1.09003 * 109.46946 * 307.09817 * 18 16 15 47 47 H 1.08993 * 109.47679 * 187.09360 * 18 16 15 48 48 H 0.97000 * 119.99792 * 0.02562 * 19 18 16 49 49 H 0.97005 * 119.99715 * 179.97438 * 23 22 20 50 50 H 1.09004 * 110.48443 * 95.08771 * 28 16 15 51 51 H 1.09000 * 110.48808 * 217.73994 * 28 16 15 52 52 H 1.07996 * 120.53771 * 179.70776 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0322 -0.7105 1.2304 6 7 1.7010 -1.9730 1.4186 7 6 2.1197 -2.6344 2.4832 8 6 2.9254 -1.9733 3.4172 9 6 3.4190 -2.6706 4.6236 10 8 3.1258 -3.8344 4.8157 11 7 4.1935 -2.0155 5.5111 12 6 4.6832 -2.7066 6.7064 13 1 4.9261 -3.7445 6.4785 14 6 3.6440 -2.6250 7.8521 15 6 4.4799 -2.8113 9.1351 16 6 5.9195 -2.3951 8.7861 17 1 6.5968 -3.2371 8.9288 18 6 6.3530 -1.2197 9.6645 19 7 6.4577 -1.6634 11.0569 20 6 6.8325 -0.7774 12.0313 21 1 7.0506 0.2485 11.7737 22 6 6.9262 -1.1963 13.3515 23 7 6.6600 -2.4464 13.6656 24 14 7.4300 0.0142 14.6820 25 1 6.2198 0.6718 15.2369 26 1 8.1411 -0.7097 15.7663 27 1 8.3298 1.0426 14.1006 28 6 5.9095 -1.9707 7.3029 29 6 3.2463 -0.6321 3.1794 30 7 2.7894 -0.0500 2.0845 31 1 -0.3633 0.5138 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 1.6765 -1.7489 -1.2493 38 1 1.6766 -0.2074 -2.1392 39 1 3.1299 -0.7217 -1.2491 40 1 1.8439 -3.6681 2.6304 41 1 4.4272 -1.0866 5.3579 42 1 2.9079 -3.4232 7.7571 43 1 3.1522 -1.6522 7.8550 44 1 4.4583 -3.8556 9.4465 45 1 4.0903 -2.1766 9.9310 46 1 5.6151 -0.4207 9.5924 47 1 7.3216 -0.8514 9.3268 48 1 6.2616 -2.5847 11.2884 49 1 6.7258 -2.7393 14.5880 50 1 5.7858 -0.8912 7.2158 51 1 6.8261 -2.2919 6.8080 52 1 3.8615 -0.0830 3.8769 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507422463.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:09:05 Heat of formation + Delta-G solvation = 0.831270 kcal Electronic energy + Delta-G solvation = -29464.813889 eV Core-core repulsion = 25463.721817 eV Total energy + Delta-G solvation = -4001.092071 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 33.15 seconds Orbital eigenvalues (eV) -41.85148 -40.01403 -38.16503 -37.09800 -35.04698 -34.34414 -33.54567 -32.05915 -30.95905 -28.80613 -27.89680 -27.75864 -27.74595 -25.62082 -24.83367 -24.25351 -22.23903 -21.72664 -20.80814 -20.37435 -19.21990 -18.37334 -17.94942 -17.08000 -16.86698 -16.25009 -15.81265 -15.56840 -14.99915 -14.91453 -14.86649 -14.56690 -14.33050 -14.04923 -13.97275 -13.46050 -13.43774 -13.14119 -12.81610 -12.70595 -12.68966 -12.29291 -12.10588 -12.08240 -11.88470 -11.58821 -11.54502 -11.48150 -11.37367 -11.33704 -11.12856 -10.87891 -10.83060 -10.55964 -10.40084 -10.24672 -10.11206 -10.01126 -9.90246 -9.73351 -9.67258 -9.24250 -8.86911 -6.91359 -5.76345 -3.04780 -0.03875 0.56069 2.46740 2.74077 3.22006 3.32380 3.43151 3.48195 3.50003 3.55980 3.95418 4.23390 4.36649 4.44016 4.47646 4.47907 4.57060 4.67456 4.79616 4.86387 4.98454 5.14036 5.18366 5.27705 5.35448 5.41929 5.44806 5.47637 5.48575 5.53280 5.55840 5.58556 5.63928 5.64861 5.79680 5.81285 5.84937 5.87025 5.95642 6.04737 6.11255 6.25385 6.29169 6.36592 6.40853 6.52179 6.65667 6.81006 6.92160 7.14498 7.52987 7.69614 7.83314 8.42719 9.53892 10.12693 10.47284 11.46491 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023588 B = 0.001629 C = 0.001565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.758447 B =17188.453102 C =17890.580493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.004 4.004 3 C -0.130 4.130 4 C -0.137 4.137 5 C 0.347 3.653 6 N -0.515 5.515 7 C 0.210 3.790 8 C -0.247 4.247 9 C 0.569 3.431 10 O -0.529 6.529 11 N -0.713 5.713 12 C 0.139 3.861 13 H 0.097 0.903 14 C -0.132 4.132 15 C -0.115 4.115 16 C -0.095 4.095 17 H 0.075 0.925 18 C 0.161 3.839 19 N -0.732 5.732 20 C -0.240 4.240 21 H 0.069 0.931 22 C -0.014 4.014 23 N -0.933 5.933 24 Si 0.906 3.094 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.282 1.282 28 C -0.120 4.120 29 C 0.185 3.815 30 N -0.513 5.513 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.054 0.946 40 H 0.182 0.818 41 H 0.398 0.602 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.063 0.937 45 H 0.079 0.921 46 H 0.018 0.982 47 H 0.017 0.983 48 H 0.384 0.616 49 H 0.255 0.745 50 H 0.073 0.927 51 H 0.071 0.929 52 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.569 3.898 -31.061 33.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.006 4.006 3 C -0.187 4.187 4 C -0.195 4.195 5 C 0.081 3.919 6 N -0.227 5.227 7 C 0.043 3.957 8 C -0.255 4.255 9 C 0.354 3.646 10 O -0.406 6.406 11 N -0.364 5.364 12 C 0.035 3.965 13 H 0.115 0.885 14 C -0.170 4.170 15 C -0.153 4.153 16 C -0.115 4.115 17 H 0.094 0.906 18 C 0.033 3.967 19 N -0.376 5.376 20 C -0.371 4.371 21 H 0.087 0.913 22 C -0.210 4.210 23 N -0.581 5.581 24 Si 0.738 3.262 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.208 1.208 28 C -0.159 4.159 29 C 0.017 3.983 30 N -0.226 5.226 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.199 0.801 41 H 0.233 0.767 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.098 0.902 46 H 0.036 0.964 47 H 0.034 0.966 48 H 0.218 0.782 49 H 0.065 0.935 50 H 0.092 0.908 51 H 0.089 0.911 52 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -11.034 3.675 -31.635 33.705 hybrid contribution 0.738 0.342 1.817 1.991 sum -10.297 4.017 -29.818 31.800 Atomic orbital electron populations 1.21857 0.92158 1.03132 1.02338 1.19494 0.96541 0.95281 0.89244 1.21737 1.01848 0.93108 1.02040 1.21857 1.01078 1.01081 0.95448 1.23419 0.87539 0.87008 0.93971 1.68323 1.23600 1.09388 1.21421 1.23536 0.86333 1.00186 0.85620 1.21834 1.05996 0.97585 1.00055 1.17753 0.78648 0.86233 0.81993 1.90809 1.57282 1.16111 1.76355 1.45959 1.51603 1.15497 1.23316 1.22178 0.94136 0.97272 0.82903 0.88483 1.22735 0.97819 1.01957 0.94509 1.22129 0.94240 1.02044 0.96915 1.21873 0.97152 0.99628 0.92821 0.90639 1.20735 0.96980 0.93445 0.85541 1.42363 1.82612 1.11416 1.01230 1.19230 1.37949 0.92399 0.87551 0.91266 1.24738 1.02642 0.96363 0.97265 1.69660 1.55679 1.14936 1.17870 0.86199 0.78032 0.80087 0.81924 1.21764 1.21773 1.20805 1.22628 0.96682 1.00351 0.96239 1.23518 0.91685 0.90471 0.92591 1.68326 1.11757 1.39007 1.03527 0.92617 0.91290 0.91291 0.91851 0.92122 0.91828 0.91300 0.91291 0.92650 0.80074 0.76662 0.91493 0.91559 0.91820 0.90225 0.96374 0.96558 0.78201 0.93533 0.90834 0.91052 0.81085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 8.37 37.15 0.31 -0.50 16 2 C 0.00 -0.02 0.92 -155.67 -0.14 -0.17 16 3 C -0.13 -0.78 7.66 37.16 0.28 -0.50 16 4 C -0.14 -0.80 8.37 37.16 0.31 -0.49 16 5 C 0.35 3.11 6.25 -157.06 -0.98 2.13 16 6 N -0.51 -4.89 9.77 -10.39 -0.10 -4.99 16 7 C 0.21 1.96 10.88 -16.78 -0.18 1.77 16 8 C -0.25 -2.24 5.91 -104.69 -0.62 -2.85 16 9 C 0.57 6.10 7.78 -12.34 -0.10 6.01 16 10 O -0.53 -7.49 16.17 5.33 0.09 -7.40 16 11 N -0.71 -6.53 5.17 -52.79 -0.27 -6.80 16 12 C 0.14 1.55 3.18 -65.90 -0.21 1.34 16 13 H 0.10 1.21 7.70 -51.93 -0.40 0.81 16 14 C -0.13 -1.66 6.51 -25.07 -0.16 -1.82 16 15 C -0.12 -1.73 6.16 -25.62 -0.16 -1.89 16 16 C -0.10 -1.45 2.97 -89.50 -0.27 -1.71 16 17 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 18 C 0.16 3.10 5.28 -4.04 -0.02 3.08 16 19 N -0.73 -18.26 5.36 -59.90 -0.32 -18.58 16 20 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 21 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 22 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 23 N -0.93 -28.17 13.06 55.49 0.72 -27.45 16 24 Si 0.91 22.37 29.55 -169.99 -5.02 17.34 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 27 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 28 C -0.12 -1.36 5.97 -25.03 -0.15 -1.51 16 29 C 0.18 1.43 10.81 -16.77 -0.18 1.25 16 30 N -0.51 -4.58 8.98 -10.39 -0.09 -4.68 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.45 8.01 -51.93 -0.42 0.04 16 34 H 0.06 0.42 8.04 -51.93 -0.42 0.00 16 35 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.06 0.43 8.04 -51.93 -0.42 0.01 16 37 H 0.07 0.45 8.01 -51.93 -0.42 0.03 16 38 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.18 1.51 7.74 -52.49 -0.41 1.10 16 41 H 0.40 2.54 6.66 -40.82 -0.27 2.26 16 42 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.08 1.39 7.59 -51.93 -0.39 1.00 16 46 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.38 10.10 7.53 -40.82 -0.31 9.79 16 49 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 50 H 0.07 0.75 7.73 -51.93 -0.40 0.35 16 51 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 52 H 0.17 0.79 6.54 -52.49 -0.34 0.45 16 LS Contribution 419.31 15.07 6.32 6.32 Total: -1.00 -33.20 419.31 -10.00 -43.20 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -8.81 Total: 6.24 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: -2.51 Total: -3.21 kcal Atomic # 7 Polarization: -62.43 SS G_CDS: -0.06 Total: -62.49 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: 0.09 Total: -7.40 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -33.20 -10.00 -43.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507422463.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.035 kcal (2) G-P(sol) polarization free energy of solvation -33.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 33.15 seconds