Wall clock time and date at job start Wed Apr 1 2020 06:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47550 * 2 1 4 4 C 1.53004 * 109.46858 * 240.00049 * 2 1 3 5 5 C 1.50695 * 109.46857 * 120.00412 * 2 1 3 6 6 N 1.31870 * 118.95843 * 59.99699 * 5 2 1 7 7 C 1.32147 * 120.96950 * 179.97438 * 6 5 2 8 8 C 1.39949 * 118.92445 * 0.02562 * 7 6 5 9 9 C 1.47831 * 120.93460 * 180.02562 * 8 7 6 10 10 O 1.21544 * 120.00498 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99595 * 180.02562 * 9 8 7 12 12 C 1.46500 * 120.00217 * 180.02562 * 11 9 8 13 13 H 1.09003 * 110.67458 * 36.77410 * 12 11 9 14 14 C 1.54891 * 110.75512 * 273.54367 * 12 11 9 15 15 C 1.54263 * 104.19869 * 203.74014 * 14 12 11 16 16 C 1.53873 * 106.59601 * 23.60807 * 15 14 12 17 17 H 1.09004 * 110.03752 * 240.66561 * 16 15 14 18 18 C 1.53005 * 110.03537 * 119.28547 * 16 15 14 19 19 N 1.46505 * 109.46904 * 67.09058 * 18 16 15 20 20 C 1.36931 * 119.99788 * 180.02562 * 19 18 16 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 18 22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 18 23 23 N 1.31614 * 119.99888 * 0.27479 * 22 20 19 24 24 Si 1.86803 * 119.99862 * 180.27671 * 22 20 19 25 25 H 1.48498 * 109.47174 * 90.00121 * 24 22 20 26 26 H 1.48501 * 109.47062 * 210.00072 * 24 22 20 27 27 H 1.48504 * 109.46913 * 329.99871 * 24 22 20 28 28 C 1.54269 * 106.64467 * 359.97438 * 16 15 14 29 29 C 1.39945 * 118.12166 * 0.26760 * 8 7 6 30 30 N 1.31876 * 118.94791 * 239.97155 * 5 2 1 31 31 H 1.08997 * 109.47145 * 300.00100 * 1 2 3 32 32 H 1.09007 * 109.47199 * 59.99917 * 1 2 3 33 33 H 1.08999 * 109.47390 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47691 * 180.02562 * 3 2 1 35 35 H 1.09007 * 109.46938 * 300.00243 * 3 2 1 36 36 H 1.08997 * 109.46978 * 59.99798 * 3 2 1 37 37 H 1.08999 * 109.47182 * 300.00204 * 4 2 1 38 38 H 1.08996 * 109.47246 * 60.00544 * 4 2 1 39 39 H 1.09005 * 109.47085 * 180.02562 * 4 2 1 40 40 H 1.07997 * 120.53141 * 179.97438 * 7 6 5 41 41 H 0.97006 * 120.00005 * 359.97438 * 11 9 8 42 42 H 1.09004 * 110.48971 * 85.06152 * 14 12 11 43 43 H 1.09004 * 110.59447 * 322.47627 * 14 12 11 44 44 H 1.08997 * 110.03354 * 264.32662 * 15 14 12 45 45 H 1.08997 * 110.07501 * 142.91623 * 15 14 12 46 46 H 1.09003 * 109.46946 * 307.09817 * 18 16 15 47 47 H 1.08993 * 109.47679 * 187.09360 * 18 16 15 48 48 H 0.97000 * 119.99792 * 0.02562 * 19 18 16 49 49 H 0.97005 * 119.99715 * 179.97438 * 23 22 20 50 50 H 1.09004 * 110.48443 * 95.08771 * 28 16 15 51 51 H 1.09000 * 110.48808 * 217.73994 * 28 16 15 52 52 H 1.07996 * 120.53771 * 179.70776 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0322 -0.7105 1.2304 6 7 1.7010 -1.9730 1.4186 7 6 2.1197 -2.6344 2.4832 8 6 2.9254 -1.9733 3.4172 9 6 3.4190 -2.6706 4.6236 10 8 3.1258 -3.8344 4.8157 11 7 4.1935 -2.0155 5.5111 12 6 4.6832 -2.7066 6.7064 13 1 4.9261 -3.7445 6.4785 14 6 3.6440 -2.6250 7.8521 15 6 4.4799 -2.8113 9.1351 16 6 5.9195 -2.3951 8.7861 17 1 6.5968 -3.2371 8.9288 18 6 6.3530 -1.2197 9.6645 19 7 6.4577 -1.6634 11.0569 20 6 6.8325 -0.7774 12.0313 21 1 7.0506 0.2485 11.7737 22 6 6.9262 -1.1963 13.3515 23 7 6.6600 -2.4464 13.6656 24 14 7.4300 0.0142 14.6820 25 1 6.2198 0.6718 15.2369 26 1 8.1411 -0.7097 15.7663 27 1 8.3298 1.0426 14.1006 28 6 5.9095 -1.9707 7.3029 29 6 3.2463 -0.6321 3.1794 30 7 2.7894 -0.0500 2.0845 31 1 -0.3633 0.5138 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 1.6765 -1.7489 -1.2493 38 1 1.6766 -0.2074 -2.1392 39 1 3.1299 -0.7217 -1.2491 40 1 1.8439 -3.6681 2.6304 41 1 4.4272 -1.0866 5.3579 42 1 2.9079 -3.4232 7.7571 43 1 3.1522 -1.6522 7.8550 44 1 4.4583 -3.8556 9.4465 45 1 4.0903 -2.1766 9.9310 46 1 5.6151 -0.4207 9.5924 47 1 7.3216 -0.8514 9.3268 48 1 6.2616 -2.5847 11.2884 49 1 6.7258 -2.7393 14.5880 50 1 5.7858 -0.8912 7.2158 51 1 6.8261 -2.2919 6.8080 52 1 3.8615 -0.0830 3.8769 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507422463.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:08:55 Heat of formation + Delta-G solvation = -19.830676 kcal Electronic energy + Delta-G solvation = -29465.709858 eV Core-core repulsion = 25463.721817 eV Total energy + Delta-G solvation = -4001.988041 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 25.23 seconds Orbital eigenvalues (eV) -42.52242 -40.90740 -39.27060 -37.66151 -36.48944 -35.27757 -34.69807 -33.18487 -32.41489 -30.11119 -29.05341 -28.26641 -28.19854 -26.59204 -25.87748 -25.37030 -23.95524 -22.56890 -21.75832 -20.98146 -20.47378 -19.25572 -18.97522 -18.66622 -17.49651 -17.25300 -16.71463 -16.59144 -16.44673 -15.85410 -15.70471 -15.50845 -15.18436 -15.11918 -14.85795 -14.64002 -14.56792 -14.40247 -14.20804 -13.42855 -13.29807 -13.21102 -13.13216 -12.91788 -12.83682 -12.79578 -12.56481 -12.50809 -12.17540 -12.13318 -12.09434 -12.05331 -11.94558 -11.86201 -11.84542 -11.70149 -11.52379 -11.27104 -11.10212 -10.90249 -10.71117 -10.39598 -10.12726 -8.96668 -7.93744 -5.21857 -0.72606 -0.09150 1.47715 1.49318 1.57740 1.66694 1.91649 2.57182 2.63464 2.64603 2.94586 3.31176 3.39960 3.51777 3.56979 3.67500 3.80853 3.82595 3.90490 3.99069 3.99169 4.21848 4.33906 4.37623 4.46446 4.51566 4.56772 4.60527 4.68552 4.77219 4.79056 4.80289 4.87949 4.93648 4.97175 4.99762 5.01349 5.02271 5.11709 5.13644 5.17854 5.25544 5.31750 5.35267 5.41741 5.45737 5.49169 5.52751 5.57681 5.75769 6.28829 6.38640 6.87154 7.04595 7.35080 8.13495 8.35363 9.29884 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023588 B = 0.001629 C = 0.001565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.758447 B =17188.453102 C =17890.580493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.008 4.008 3 C -0.124 4.124 4 C -0.132 4.132 5 C 0.339 3.661 6 N -0.527 5.527 7 C 0.203 3.797 8 C -0.252 4.252 9 C 0.573 3.427 10 O -0.567 6.567 11 N -0.699 5.699 12 C 0.149 3.851 13 H 0.087 0.913 14 C -0.123 4.123 15 C -0.112 4.112 16 C -0.090 4.090 17 H 0.065 0.935 18 C 0.159 3.841 19 N -0.746 5.746 20 C -0.244 4.244 21 H 0.077 0.923 22 C -0.077 4.077 23 N -0.970 5.970 24 Si 0.973 3.027 25 H -0.288 1.288 26 H -0.297 1.297 27 H -0.268 1.268 28 C -0.106 4.106 29 C 0.193 3.807 30 N -0.523 5.523 31 H 0.048 0.952 32 H 0.088 0.912 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.078 0.922 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.088 0.912 39 H 0.049 0.951 40 H 0.184 0.816 41 H 0.415 0.585 42 H 0.059 0.941 43 H 0.074 0.926 44 H 0.054 0.946 45 H 0.051 0.949 46 H 0.023 0.977 47 H 0.022 0.978 48 H 0.373 0.627 49 H 0.250 0.750 50 H 0.093 0.907 51 H 0.088 0.912 52 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.295 6.086 -32.955 35.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.010 4.010 3 C -0.182 4.182 4 C -0.190 4.190 5 C 0.073 3.927 6 N -0.240 5.240 7 C 0.036 3.964 8 C -0.260 4.260 9 C 0.359 3.641 10 O -0.447 6.447 11 N -0.350 5.350 12 C 0.044 3.956 13 H 0.105 0.895 14 C -0.162 4.162 15 C -0.151 4.151 16 C -0.109 4.109 17 H 0.084 0.916 18 C 0.033 3.967 19 N -0.388 5.388 20 C -0.376 4.376 21 H 0.094 0.906 22 C -0.270 4.270 23 N -0.621 5.621 24 Si 0.802 3.198 25 H -0.215 1.215 26 H -0.223 1.223 27 H -0.193 1.193 28 C -0.145 4.145 29 C 0.025 3.975 30 N -0.236 5.236 31 H 0.067 0.933 32 H 0.107 0.893 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.097 0.903 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.107 0.893 39 H 0.068 0.932 40 H 0.201 0.799 41 H 0.253 0.747 42 H 0.078 0.922 43 H 0.093 0.907 44 H 0.073 0.927 45 H 0.070 0.930 46 H 0.041 0.959 47 H 0.040 0.960 48 H 0.205 0.795 49 H 0.059 0.941 50 H 0.111 0.889 51 H 0.107 0.893 52 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -10.751 5.924 -33.580 35.753 hybrid contribution 0.622 -0.322 2.340 2.443 sum -10.129 5.603 -31.240 33.316 Atomic orbital electron populations 1.21832 0.91561 1.02713 1.02967 1.19664 0.96999 0.95618 0.88715 1.21694 1.01355 0.92560 1.02551 1.21830 1.00663 1.00712 0.95818 1.23933 0.87167 0.86972 0.94602 1.68373 1.24152 1.09842 1.21612 1.23670 0.86406 1.00509 0.85818 1.21659 1.06702 0.98178 0.99470 1.17919 0.78138 0.85716 0.82280 1.90798 1.58781 1.17876 1.77249 1.45741 1.50894 1.16169 1.22198 1.21904 0.93517 0.97085 0.83050 0.89535 1.22642 0.97664 1.02129 0.93745 1.22027 0.94809 1.00854 0.97375 1.21769 0.96553 0.97751 0.94815 0.91608 1.20924 0.97265 0.95096 0.83427 1.42604 1.82413 1.10628 1.03198 1.19667 1.36495 0.93062 0.88407 0.90558 1.25566 1.03716 0.98068 0.99600 1.69821 1.57575 1.16836 1.17862 0.85150 0.77679 0.78103 0.78892 1.21521 1.22323 1.19311 1.22527 0.97414 1.01495 0.93031 1.24016 0.90975 0.89936 0.92533 1.68428 1.12155 1.39069 1.03958 0.93328 0.89297 0.92223 0.92512 0.90291 0.92618 0.92226 0.89311 0.93223 0.79916 0.74653 0.92225 0.90697 0.92686 0.92976 0.95909 0.96015 0.79500 0.94113 0.88871 0.89312 0.77887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.40 8.37 71.98 0.60 -0.80 16 2 C -0.01 -0.10 0.92 -52.93 -0.05 -0.15 16 3 C -0.12 -1.27 7.66 71.98 0.55 -0.72 16 4 C -0.13 -1.36 8.37 71.98 0.60 -0.76 16 5 C 0.34 5.72 6.25 138.70 0.87 6.58 16 6 N -0.53 -9.74 9.77 -186.80 -1.83 -11.57 16 7 C 0.20 3.69 10.88 85.06 0.93 4.62 16 8 C -0.25 -4.23 5.91 -19.91 -0.12 -4.35 16 9 C 0.57 11.50 7.78 86.78 0.68 12.17 16 10 O -0.57 -15.86 16.17 -3.85 -0.06 -15.93 16 11 N -0.70 -11.03 5.17 -439.20 -2.27 -13.30 16 12 C 0.15 3.05 3.18 46.31 0.15 3.19 16 13 H 0.09 2.04 7.70 -2.39 -0.02 2.02 16 14 C -0.12 -2.98 6.51 31.67 0.21 -2.78 16 15 C -0.11 -3.40 6.16 31.32 0.19 -3.20 16 16 C -0.09 -2.63 2.97 -10.07 -0.03 -2.66 16 17 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 18 C 0.16 5.98 5.28 86.38 0.46 6.43 16 19 N -0.75 -37.43 5.36 -343.44 -1.84 -39.28 16 20 C -0.24 -13.58 9.99 84.04 0.84 -12.75 16 21 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 22 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 23 N -0.97 -59.67 13.06 21.65 0.28 -59.38 16 24 Si 0.97 46.06 29.55 68.60 2.03 48.09 16 25 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 26 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 27 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 28 C -0.11 -2.10 5.97 31.70 0.19 -1.91 16 29 C 0.19 2.55 10.81 85.06 0.92 3.47 16 30 N -0.52 -8.44 8.98 -186.80 -1.68 -10.12 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.09 0.57 8.14 -2.38 -0.02 0.55 16 33 H 0.06 0.74 8.01 -2.39 -0.02 0.72 16 34 H 0.06 0.66 8.04 -2.39 -0.02 0.64 16 35 H 0.08 0.51 8.14 -2.38 -0.02 0.49 16 36 H 0.05 0.66 8.04 -2.39 -0.02 0.64 16 37 H 0.06 0.72 8.01 -2.39 -0.02 0.71 16 38 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 40 H 0.18 3.11 7.74 -2.91 -0.02 3.09 16 41 H 0.42 3.74 6.66 -92.70 -0.62 3.13 16 42 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.07 1.69 8.14 -2.39 -0.02 1.68 16 44 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.05 1.86 7.59 -2.39 -0.02 1.84 16 46 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.37 20.11 7.53 -92.71 -0.70 19.41 16 49 H 0.25 14.94 8.31 -92.70 -0.77 14.17 16 50 H 0.09 1.53 7.73 -2.39 -0.02 1.51 16 51 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 52 H 0.20 1.14 6.54 -2.91 -0.02 1.12 16 Total: -1.00 -72.39 419.31 1.69 -70.71 By element: Atomic # 1 Polarization: 28.74 SS G_CDS: -0.39 Total: 28.35 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: 7.45 Total: 2.43 kcal Atomic # 7 Polarization: -126.31 SS G_CDS: -7.33 Total: -133.64 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -0.06 Total: -15.93 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -72.39 1.69 -70.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507422463.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.876 kcal (2) G-P(sol) polarization free energy of solvation -72.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 25.24 seconds