Wall clock time and date at job start Wed Apr 1 2020 06:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53010 * 109.46694 * 2 1 4 4 C 1.52993 * 109.47237 * 240.00094 * 2 1 3 5 5 C 1.50700 * 109.47044 * 119.99451 * 2 1 3 6 6 N 1.31870 * 118.94814 * 60.00848 * 5 2 1 7 7 C 1.32149 * 120.96428 * 179.97438 * 6 5 2 8 8 C 1.39949 * 118.92274 * 359.97438 * 7 6 5 9 9 C 1.47840 * 120.93473 * 180.02562 * 8 7 6 10 10 O 1.21548 * 120.00024 * 359.97438 * 9 8 7 11 11 N 1.34783 * 119.99688 * 180.02562 * 9 8 7 12 12 C 1.46496 * 119.99709 * 180.02562 * 11 9 8 13 13 H 1.08995 * 110.02111 * 326.38949 * 12 11 9 14 14 C 1.53882 * 110.07309 * 87.81040 * 12 11 9 15 15 C 1.54267 * 106.59905 * 119.30308 * 14 12 11 16 16 C 1.54889 * 104.19467 * 23.60979 * 15 14 12 17 17 H 1.08999 * 110.91491 * 80.44193 * 16 15 14 18 18 C 1.53001 * 110.75493 * 203.73936 * 16 15 14 19 19 N 1.46490 * 109.47264 * 288.32759 * 18 16 15 20 20 C 1.36935 * 120.00121 * 179.97438 * 19 18 16 21 21 H 1.07997 * 120.00139 * 0.02562 * 20 19 18 22 22 C 1.38816 * 120.00401 * 180.02562 * 20 19 18 23 23 N 1.31624 * 119.99569 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00172 * 180.02562 * 22 20 19 25 25 H 1.48508 * 109.46685 * 269.99637 * 24 22 20 26 26 H 1.48494 * 109.47357 * 29.99716 * 24 22 20 27 27 H 1.48502 * 109.47120 * 150.00435 * 24 22 20 28 28 C 1.54271 * 110.02885 * 204.99850 * 12 11 9 29 29 C 1.39943 * 118.12321 * 0.27311 * 8 7 6 30 30 N 1.31871 * 118.95398 * 239.97714 * 5 2 1 31 31 H 1.09003 * 109.47308 * 300.00238 * 1 2 3 32 32 H 1.09000 * 109.46888 * 60.00478 * 1 2 3 33 33 H 1.08997 * 109.46782 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.46792 * 180.02562 * 3 2 1 35 35 H 1.08995 * 109.46990 * 299.99892 * 3 2 1 36 36 H 1.08995 * 109.46845 * 59.99975 * 3 2 1 37 37 H 1.08997 * 109.47099 * 299.99639 * 4 2 1 38 38 H 1.09000 * 109.47649 * 59.99894 * 4 2 1 39 39 H 1.09005 * 109.46943 * 179.97438 * 4 2 1 40 40 H 1.07996 * 120.53751 * 179.97438 * 7 6 5 41 41 H 0.97005 * 119.99773 * 359.97438 * 11 9 8 42 42 H 1.09004 * 110.02606 * 238.58771 * 14 12 11 43 43 H 1.08997 * 110.02881 * 0.02562 * 14 12 11 44 44 H 1.08991 * 110.48623 * 264.93368 * 15 14 12 45 45 H 1.09000 * 110.48373 * 142.28652 * 15 14 12 46 46 H 1.09003 * 109.46836 * 168.32466 * 18 16 15 47 47 H 1.08999 * 109.47071 * 48.33505 * 18 16 15 48 48 H 0.97000 * 120.00577 * 0.02562 * 19 18 16 49 49 H 0.97001 * 119.99885 * 359.97438 * 23 22 20 50 50 H 1.08998 * 110.48457 * 98.37987 * 28 12 11 51 51 H 1.08995 * 110.59975 * 335.78991 * 28 12 11 52 52 H 1.08003 * 120.53706 * 179.70717 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7103 1.2305 6 7 1.7013 -1.9728 1.4186 7 6 2.1200 -2.6342 2.4833 8 6 2.9264 -1.9732 3.4168 9 6 3.4201 -2.6705 4.6234 10 8 3.1262 -3.8341 4.8159 11 7 4.1952 -2.0155 5.5104 12 6 4.6849 -2.7066 6.7057 13 1 3.9451 -3.4302 7.0477 14 6 6.0144 -3.4175 6.3973 15 6 7.0713 -2.8028 7.3380 16 6 6.2455 -2.2415 8.5221 17 1 5.9823 -3.0336 9.2230 18 6 7.0089 -1.1225 9.2333 19 7 8.1300 -1.6955 9.9821 20 6 8.9610 -0.8793 10.7021 21 1 8.7897 0.1868 10.7182 22 6 10.0237 -1.4223 11.4112 23 7 10.2328 -2.7216 11.3911 24 14 11.1569 -0.3089 12.3939 25 1 12.2821 0.1362 11.5329 26 1 10.3976 0.8760 12.8680 27 1 11.6920 -1.0538 13.5618 28 6 4.9804 -1.6847 7.8230 29 6 3.2479 -0.6322 3.1785 30 7 2.7895 -0.0497 2.0846 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 3.1299 1.4427 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 1.6768 -1.7488 -1.2492 38 1 1.6767 -0.2074 -2.1392 39 1 3.1301 -0.7208 -1.2494 40 1 1.8443 -3.6679 2.6307 41 1 4.4295 -1.0867 5.3568 42 1 5.9196 -4.4862 6.5898 43 1 6.2960 -3.2481 5.3581 44 1 7.6098 -2.0002 6.8342 45 1 7.7643 -3.5690 7.6856 46 1 6.3391 -0.6057 9.9207 47 1 7.3881 -0.4155 8.4955 48 1 8.2842 -2.6531 9.9674 49 1 9.6442 -3.2998 10.8811 50 1 4.1476 -1.6349 8.5244 51 1 5.1806 -0.7005 7.3994 52 1 3.8636 -0.0833 3.8757 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507422465.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:11:22 Heat of formation + Delta-G solvation = 1.740838 kcal Electronic energy + Delta-G solvation = -29531.894783 eV Core-core repulsion = 25530.842153 eV Total energy + Delta-G solvation = -4001.052630 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.87720 -40.10360 -38.20654 -37.11361 -35.18847 -34.43099 -33.68239 -32.11336 -30.96195 -28.81561 -27.88767 -27.76000 -27.75702 -25.60660 -24.82964 -24.09285 -22.44602 -21.81567 -20.56377 -20.42115 -19.61402 -18.41799 -17.96113 -17.23035 -16.89425 -16.42649 -15.83963 -15.55810 -15.14078 -14.98014 -14.84215 -14.50117 -14.30228 -14.03300 -13.96362 -13.74217 -13.51130 -13.28277 -13.16085 -12.72264 -12.69842 -12.31102 -12.30557 -12.09449 -11.83973 -11.73959 -11.59128 -11.50375 -11.38401 -11.35693 -10.99522 -10.78734 -10.68109 -10.56021 -10.38126 -10.28921 -10.24612 -10.03609 -10.00852 -9.75144 -9.32850 -9.16267 -8.87347 -6.99338 -6.10411 -3.09672 -0.06251 0.54062 2.43314 2.70968 3.20259 3.29962 3.51090 3.54019 3.56100 3.70158 3.93164 4.20818 4.34558 4.40952 4.46478 4.46546 4.57306 4.63585 4.70710 4.84550 4.91727 5.12397 5.17315 5.26126 5.32319 5.34310 5.40940 5.44483 5.46665 5.47134 5.51380 5.53301 5.62308 5.62896 5.71449 5.77441 5.80147 5.84016 5.91816 5.94734 6.00857 6.05223 6.18050 6.29224 6.38387 6.43913 6.44862 6.69368 6.81225 7.09679 7.51055 7.79173 7.81051 8.76298 9.24067 10.10396 10.25573 11.38375 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021606 B = 0.001661 C = 0.001587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.596690 B =16851.183502 C =17636.754908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.004 4.004 3 C -0.130 4.130 4 C -0.137 4.137 5 C 0.347 3.653 6 N -0.515 5.515 7 C 0.211 3.789 8 C -0.248 4.248 9 C 0.568 3.432 10 O -0.530 6.530 11 N -0.714 5.714 12 C 0.141 3.859 13 H 0.094 0.906 14 C -0.133 4.133 15 C -0.112 4.112 16 C -0.097 4.097 17 H 0.078 0.922 18 C 0.167 3.833 19 N -0.743 5.743 20 C -0.332 4.332 21 H 0.064 0.936 22 C -0.046 4.046 23 N -0.945 5.945 24 Si 1.083 2.917 25 H -0.296 1.296 26 H -0.295 1.295 27 H -0.288 1.288 28 C -0.121 4.121 29 C 0.185 3.815 30 N -0.513 5.513 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.055 0.945 40 H 0.182 0.818 41 H 0.398 0.602 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.018 0.982 47 H 0.019 0.981 48 H 0.367 0.633 49 H 0.255 0.745 50 H 0.073 0.927 51 H 0.073 0.927 52 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.643 5.104 -24.919 32.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.006 4.006 3 C -0.187 4.187 4 C -0.195 4.195 5 C 0.081 3.919 6 N -0.227 5.227 7 C 0.043 3.957 8 C -0.256 4.256 9 C 0.353 3.647 10 O -0.407 6.407 11 N -0.365 5.365 12 C 0.038 3.962 13 H 0.112 0.888 14 C -0.172 4.172 15 C -0.150 4.150 16 C -0.116 4.116 17 H 0.097 0.903 18 C 0.040 3.960 19 N -0.388 5.388 20 C -0.463 4.463 21 H 0.082 0.918 22 C -0.244 4.244 23 N -0.590 5.590 24 Si 0.914 3.086 25 H -0.223 1.223 26 H -0.222 1.222 27 H -0.214 1.214 28 C -0.160 4.160 29 C 0.018 3.982 30 N -0.226 5.226 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.199 0.801 41 H 0.234 0.766 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.088 0.912 46 H 0.036 0.964 47 H 0.037 0.963 48 H 0.200 0.800 49 H 0.066 0.934 50 H 0.092 0.908 51 H 0.092 0.908 52 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -19.883 5.020 -24.575 32.007 hybrid contribution -0.761 -0.282 -0.170 0.830 sum -20.645 4.738 -24.745 32.572 Atomic orbital electron populations 1.21856 0.92160 1.03115 1.02327 1.19502 0.96533 0.95300 0.89239 1.21740 1.01889 0.93084 1.02032 1.21857 1.01120 1.01073 0.95436 1.23429 0.87503 0.86997 0.93960 1.68328 1.23662 1.09376 1.21355 1.23533 0.86357 1.00159 0.85615 1.21829 1.06035 0.97593 1.00101 1.17776 0.78441 0.86247 0.82188 1.90806 1.57907 1.16016 1.75936 1.46140 1.51401 1.15562 1.23426 1.21792 0.96234 0.94751 0.83461 0.88796 1.22593 0.94327 1.00246 1.00039 1.22357 0.96986 1.00426 0.95240 1.22292 0.93893 0.98879 0.96579 0.90326 1.20563 0.89141 0.93150 0.93166 1.42347 1.31704 1.06299 1.58487 1.20065 1.09034 0.91381 1.25814 0.91810 1.25775 0.98812 0.98959 1.00822 1.70851 1.40830 1.02989 1.44359 0.83194 0.75404 0.73782 0.76240 1.22345 1.22189 1.21372 1.22630 0.98730 0.98137 0.96459 1.23518 0.91630 0.90472 0.92611 1.68323 1.11695 1.39040 1.03518 0.92647 0.91269 0.91301 0.91828 0.92100 0.91843 0.91296 0.91271 0.92623 0.80085 0.76624 0.91138 0.91686 0.91442 0.91233 0.96393 0.96301 0.79997 0.93385 0.90810 0.90828 0.81100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 8.37 37.16 0.31 -0.49 16 2 C 0.00 -0.03 0.92 -155.66 -0.14 -0.17 16 3 C -0.13 -0.79 7.66 37.16 0.28 -0.51 16 4 C -0.14 -0.82 8.37 37.15 0.31 -0.51 16 5 C 0.35 3.13 6.25 -157.06 -0.98 2.15 16 6 N -0.51 -4.89 9.77 -10.39 -0.10 -4.99 16 7 C 0.21 1.95 10.88 -16.77 -0.18 1.77 16 8 C -0.25 -2.25 5.91 -104.69 -0.62 -2.87 16 9 C 0.57 6.07 7.78 -12.33 -0.10 5.97 16 10 O -0.53 -7.42 16.10 5.32 0.09 -7.34 16 11 N -0.71 -6.54 4.94 -53.66 -0.27 -6.81 16 12 C 0.14 1.56 3.24 -66.81 -0.22 1.34 16 13 H 0.09 1.14 7.56 -51.93 -0.39 0.75 16 14 C -0.13 -1.62 6.59 -25.61 -0.17 -1.79 16 15 C -0.11 -1.61 6.20 -25.07 -0.16 -1.77 16 16 C -0.10 -1.46 2.91 -88.62 -0.26 -1.71 16 17 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 18 C 0.17 3.26 5.70 -4.05 -0.02 3.24 16 19 N -0.74 -18.57 5.52 -59.91 -0.33 -18.90 16 20 C -0.33 -9.41 9.99 -15.06 -0.15 -9.56 16 21 H 0.06 1.78 7.83 -52.49 -0.41 1.37 16 22 C -0.05 -1.35 5.50 -17.43 -0.10 -1.45 16 23 N -0.94 -29.30 13.70 55.49 0.76 -28.54 16 24 Si 1.08 26.02 29.92 -169.99 -5.09 20.94 16 25 H -0.30 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.30 -6.69 7.11 56.52 0.40 -6.29 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 28 C -0.12 -1.37 5.97 -25.07 -0.15 -1.52 16 29 C 0.19 1.46 10.81 -16.78 -0.18 1.27 16 30 N -0.51 -4.63 8.98 -10.39 -0.09 -4.72 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.45 8.01 -51.93 -0.42 0.03 16 34 H 0.06 0.43 8.04 -51.93 -0.42 0.02 16 35 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 36 H 0.06 0.43 8.04 -51.93 -0.42 0.01 16 37 H 0.07 0.45 8.01 -51.93 -0.42 0.04 16 38 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.18 1.49 7.74 -52.49 -0.41 1.09 16 41 H 0.40 2.63 6.50 -40.82 -0.27 2.36 16 42 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.06 0.77 7.92 -51.93 -0.41 0.36 16 44 H 0.07 1.00 7.93 -51.93 -0.41 0.59 16 45 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.02 0.38 7.99 -51.93 -0.41 -0.04 16 48 H 0.37 9.37 6.50 -40.82 -0.27 9.10 16 49 H 0.25 7.77 6.77 -40.82 -0.28 7.50 16 50 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 51 H 0.07 0.74 7.65 -51.93 -0.40 0.35 16 52 H 0.17 0.83 6.54 -52.48 -0.34 0.49 16 LS Contribution 417.74 15.07 6.30 6.30 Total: -1.00 -34.35 417.74 -9.94 -44.28 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -8.68 Total: 6.38 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -2.51 Total: -6.59 kcal Atomic # 7 Polarization: -63.93 SS G_CDS: -0.03 Total: -63.96 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: 0.09 Total: -7.34 kcal Atomic # 14 Polarization: 26.02 SS G_CDS: -5.09 Total: 20.94 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -34.35 -9.94 -44.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507422465.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.022 kcal (2) G-P(sol) polarization free energy of solvation -34.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds