Wall clock time and date at job start Wed Apr 1 2020 06:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53010 * 109.46694 * 2 1 4 4 C 1.52993 * 109.47237 * 240.00094 * 2 1 3 5 5 C 1.50700 * 109.47044 * 119.99451 * 2 1 3 6 6 N 1.31870 * 118.94814 * 60.00848 * 5 2 1 7 7 C 1.32149 * 120.96428 * 179.97438 * 6 5 2 8 8 C 1.39949 * 118.92274 * 359.97438 * 7 6 5 9 9 C 1.47840 * 120.93473 * 180.02562 * 8 7 6 10 10 O 1.21548 * 120.00024 * 359.97438 * 9 8 7 11 11 N 1.34783 * 119.99688 * 180.02562 * 9 8 7 12 12 C 1.46496 * 119.99709 * 180.02562 * 11 9 8 13 13 H 1.08995 * 110.02111 * 326.38949 * 12 11 9 14 14 C 1.53882 * 110.07309 * 87.81040 * 12 11 9 15 15 C 1.54267 * 106.59905 * 119.30308 * 14 12 11 16 16 C 1.54889 * 104.19467 * 23.60979 * 15 14 12 17 17 H 1.08999 * 110.91491 * 80.44193 * 16 15 14 18 18 C 1.53001 * 110.75493 * 203.73936 * 16 15 14 19 19 N 1.46490 * 109.47264 * 288.32759 * 18 16 15 20 20 C 1.36935 * 120.00121 * 179.97438 * 19 18 16 21 21 H 1.07997 * 120.00139 * 0.02562 * 20 19 18 22 22 C 1.38816 * 120.00401 * 180.02562 * 20 19 18 23 23 N 1.31624 * 119.99569 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00172 * 180.02562 * 22 20 19 25 25 H 1.48508 * 109.46685 * 269.99637 * 24 22 20 26 26 H 1.48494 * 109.47357 * 29.99716 * 24 22 20 27 27 H 1.48502 * 109.47120 * 150.00435 * 24 22 20 28 28 C 1.54271 * 110.02885 * 204.99850 * 12 11 9 29 29 C 1.39943 * 118.12321 * 0.27311 * 8 7 6 30 30 N 1.31871 * 118.95398 * 239.97714 * 5 2 1 31 31 H 1.09003 * 109.47308 * 300.00238 * 1 2 3 32 32 H 1.09000 * 109.46888 * 60.00478 * 1 2 3 33 33 H 1.08997 * 109.46782 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.46792 * 180.02562 * 3 2 1 35 35 H 1.08995 * 109.46990 * 299.99892 * 3 2 1 36 36 H 1.08995 * 109.46845 * 59.99975 * 3 2 1 37 37 H 1.08997 * 109.47099 * 299.99639 * 4 2 1 38 38 H 1.09000 * 109.47649 * 59.99894 * 4 2 1 39 39 H 1.09005 * 109.46943 * 179.97438 * 4 2 1 40 40 H 1.07996 * 120.53751 * 179.97438 * 7 6 5 41 41 H 0.97005 * 119.99773 * 359.97438 * 11 9 8 42 42 H 1.09004 * 110.02606 * 238.58771 * 14 12 11 43 43 H 1.08997 * 110.02881 * 0.02562 * 14 12 11 44 44 H 1.08991 * 110.48623 * 264.93368 * 15 14 12 45 45 H 1.09000 * 110.48373 * 142.28652 * 15 14 12 46 46 H 1.09003 * 109.46836 * 168.32466 * 18 16 15 47 47 H 1.08999 * 109.47071 * 48.33505 * 18 16 15 48 48 H 0.97000 * 120.00577 * 0.02562 * 19 18 16 49 49 H 0.97001 * 119.99885 * 359.97438 * 23 22 20 50 50 H 1.08998 * 110.48457 * 98.37987 * 28 12 11 51 51 H 1.08995 * 110.59975 * 335.78991 * 28 12 11 52 52 H 1.08003 * 120.53706 * 179.70717 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7103 1.2305 6 7 1.7013 -1.9728 1.4186 7 6 2.1200 -2.6342 2.4833 8 6 2.9264 -1.9732 3.4168 9 6 3.4201 -2.6705 4.6234 10 8 3.1262 -3.8341 4.8159 11 7 4.1952 -2.0155 5.5104 12 6 4.6849 -2.7066 6.7057 13 1 3.9451 -3.4302 7.0477 14 6 6.0144 -3.4175 6.3973 15 6 7.0713 -2.8028 7.3380 16 6 6.2455 -2.2415 8.5221 17 1 5.9823 -3.0336 9.2230 18 6 7.0089 -1.1225 9.2333 19 7 8.1300 -1.6955 9.9821 20 6 8.9610 -0.8793 10.7021 21 1 8.7897 0.1868 10.7182 22 6 10.0237 -1.4223 11.4112 23 7 10.2328 -2.7216 11.3911 24 14 11.1569 -0.3089 12.3939 25 1 12.2821 0.1362 11.5329 26 1 10.3976 0.8760 12.8680 27 1 11.6920 -1.0538 13.5618 28 6 4.9804 -1.6847 7.8230 29 6 3.2479 -0.6322 3.1785 30 7 2.7895 -0.0497 2.0846 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 3.1299 1.4427 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 1.6768 -1.7488 -1.2492 38 1 1.6767 -0.2074 -2.1392 39 1 3.1301 -0.7208 -1.2494 40 1 1.8443 -3.6679 2.6307 41 1 4.4295 -1.0867 5.3568 42 1 5.9196 -4.4862 6.5898 43 1 6.2960 -3.2481 5.3581 44 1 7.6098 -2.0002 6.8342 45 1 7.7643 -3.5690 7.6856 46 1 6.3391 -0.6057 9.9207 47 1 7.3881 -0.4155 8.4955 48 1 8.2842 -2.6531 9.9674 49 1 9.6442 -3.2998 10.8811 50 1 4.1476 -1.6349 8.5244 51 1 5.1806 -0.7005 7.3994 52 1 3.8636 -0.0833 3.8757 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507422465.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:10:58 Heat of formation + Delta-G solvation = -19.690784 kcal Electronic energy + Delta-G solvation = -29532.824127 eV Core-core repulsion = 25530.842153 eV Total energy + Delta-G solvation = -4001.981974 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 29.41 seconds Orbital eigenvalues (eV) -42.55299 -40.99174 -39.29651 -37.68238 -36.79065 -35.35035 -34.75147 -33.20984 -32.38946 -30.08447 -29.05116 -28.28322 -28.21336 -26.49637 -25.83670 -25.39189 -24.19768 -22.64824 -21.56393 -21.08755 -20.72969 -19.38505 -19.12058 -18.67907 -17.53782 -17.41853 -16.81671 -16.53308 -16.46620 -15.77478 -15.71907 -15.57167 -15.46205 -15.07324 -14.91186 -14.86183 -14.61300 -14.59440 -14.28094 -13.64063 -13.24177 -13.15461 -12.98897 -12.87244 -12.82583 -12.65992 -12.60906 -12.57921 -12.16946 -12.08552 -12.07691 -11.96418 -11.87676 -11.86946 -11.80525 -11.70935 -11.54270 -11.21207 -11.10895 -10.90779 -10.73904 -10.41964 -10.19407 -9.08905 -8.39659 -5.32844 -0.75282 -0.11656 1.58528 1.63419 1.69354 1.83494 1.89232 2.60899 2.62267 2.71901 2.92117 3.28347 3.39825 3.46316 3.49899 3.56016 3.76067 3.80212 3.85169 3.97196 3.97538 3.99954 4.31514 4.34051 4.42008 4.45851 4.50601 4.54297 4.57085 4.68180 4.75833 4.77349 4.84748 4.86457 4.93689 4.95152 4.98341 5.00633 5.02785 5.07870 5.11439 5.13113 5.27604 5.30132 5.33766 5.43408 5.47455 5.48611 5.59791 5.73342 6.33807 6.49995 6.84791 7.00240 7.10993 8.02122 8.12732 9.12608 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021606 B = 0.001661 C = 0.001587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.596690 B =16851.183502 C =17636.754908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.008 4.008 3 C -0.124 4.124 4 C -0.133 4.133 5 C 0.339 3.661 6 N -0.526 5.526 7 C 0.203 3.797 8 C -0.253 4.253 9 C 0.573 3.427 10 O -0.567 6.567 11 N -0.701 5.701 12 C 0.151 3.849 13 H 0.086 0.914 14 C -0.125 4.125 15 C -0.108 4.108 16 C -0.092 4.092 17 H 0.067 0.933 18 C 0.165 3.835 19 N -0.757 5.757 20 C -0.335 4.335 21 H 0.067 0.933 22 C -0.106 4.106 23 N -0.976 5.976 24 Si 1.130 2.870 25 H -0.285 1.285 26 H -0.272 1.272 27 H -0.294 1.294 28 C -0.107 4.107 29 C 0.192 3.808 30 N -0.523 5.523 31 H 0.048 0.952 32 H 0.088 0.912 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.079 0.921 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.088 0.912 39 H 0.047 0.953 40 H 0.185 0.815 41 H 0.414 0.586 42 H 0.064 0.936 43 H 0.071 0.929 44 H 0.064 0.936 45 H 0.046 0.954 46 H 0.019 0.981 47 H 0.024 0.976 48 H 0.360 0.640 49 H 0.244 0.756 50 H 0.085 0.915 51 H 0.093 0.907 52 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.539 7.320 -26.080 34.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.010 4.010 3 C -0.182 4.182 4 C -0.191 4.191 5 C 0.074 3.926 6 N -0.239 5.239 7 C 0.037 3.963 8 C -0.261 4.261 9 C 0.360 3.640 10 O -0.446 6.446 11 N -0.353 5.353 12 C 0.046 3.954 13 H 0.104 0.896 14 C -0.163 4.163 15 C -0.146 4.146 16 C -0.112 4.112 17 H 0.086 0.914 18 C 0.039 3.961 19 N -0.401 5.401 20 C -0.466 4.466 21 H 0.085 0.915 22 C -0.297 4.297 23 N -0.625 5.625 24 Si 0.955 3.045 25 H -0.211 1.211 26 H -0.197 1.197 27 H -0.220 1.220 28 C -0.146 4.146 29 C 0.025 3.975 30 N -0.236 5.236 31 H 0.068 0.932 32 H 0.107 0.893 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.107 0.893 39 H 0.066 0.934 40 H 0.202 0.798 41 H 0.252 0.748 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.083 0.917 45 H 0.065 0.935 46 H 0.037 0.963 47 H 0.042 0.958 48 H 0.192 0.808 49 H 0.054 0.946 50 H 0.104 0.896 51 H 0.112 0.888 52 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -20.818 7.287 -25.773 33.922 hybrid contribution -0.533 -0.948 0.133 1.096 sum -21.351 6.339 -25.640 33.962 Atomic orbital electron populations 1.21829 0.91418 1.02745 1.03013 1.19671 0.97102 0.95580 0.88654 1.21697 1.01285 0.92601 1.02599 1.21832 1.00600 1.00751 0.95880 1.23941 0.87131 0.86982 0.94579 1.68379 1.24201 1.09795 1.21544 1.23678 0.86390 1.00501 0.85771 1.21663 1.06717 0.98137 0.99563 1.17922 0.77953 0.85739 0.82425 1.90795 1.59357 1.17698 1.76794 1.45949 1.50692 1.16164 1.22474 1.21547 0.95299 0.94565 0.83995 0.89583 1.22499 0.94194 0.99941 0.99696 1.22268 0.97121 0.99749 0.95460 1.22160 0.95289 0.97308 0.96399 0.91432 1.20750 0.87878 0.94568 0.92894 1.42594 1.32820 1.05880 1.58854 1.20446 1.09078 0.91929 1.25157 0.91502 1.27224 1.00860 0.99397 1.02266 1.70965 1.41572 1.04045 1.45874 0.82588 0.74210 0.72843 0.74841 1.21135 1.19750 1.22033 1.22531 0.96926 0.98791 0.96316 1.23994 0.90965 0.90004 0.92559 1.68421 1.12111 1.39147 1.03957 0.93237 0.89284 0.92185 0.92666 0.90252 0.92536 0.92184 0.89273 0.93362 0.79828 0.74793 0.91673 0.91043 0.91683 0.93530 0.96348 0.95838 0.80822 0.94597 0.89597 0.88829 0.78073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.36 8.37 71.98 0.60 -0.76 16 2 C -0.01 -0.10 0.92 -52.93 -0.05 -0.15 16 3 C -0.12 -1.30 7.66 71.99 0.55 -0.75 16 4 C -0.13 -1.41 8.37 71.98 0.60 -0.81 16 5 C 0.34 5.77 6.25 138.70 0.87 6.64 16 6 N -0.53 -9.73 9.77 -186.80 -1.82 -11.55 16 7 C 0.20 3.69 10.88 85.06 0.93 4.61 16 8 C -0.25 -4.26 5.91 -19.91 -0.12 -4.38 16 9 C 0.57 11.43 7.78 86.78 0.68 12.10 16 10 O -0.57 -15.58 16.10 -3.87 -0.06 -15.64 16 11 N -0.70 -11.17 4.94 -441.96 -2.18 -13.36 16 12 C 0.15 3.03 3.24 45.72 0.15 3.18 16 13 H 0.09 1.96 7.56 -2.39 -0.02 1.94 16 14 C -0.12 -2.90 6.59 31.32 0.21 -2.69 16 15 C -0.11 -3.06 6.20 31.67 0.20 -2.87 16 16 C -0.09 -2.69 2.91 -9.50 -0.03 -2.71 16 17 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 18 C 0.17 6.30 5.70 86.38 0.49 6.79 16 19 N -0.76 -38.09 5.52 -343.47 -1.90 -39.99 16 20 C -0.33 -18.91 9.99 84.03 0.84 -18.07 16 21 H 0.07 3.67 7.83 -2.91 -0.02 3.65 16 22 C -0.11 -6.22 5.50 84.86 0.47 -5.75 16 23 N -0.98 -61.57 13.70 21.65 0.30 -61.27 16 24 Si 1.13 52.02 29.92 68.60 2.05 54.07 16 25 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 26 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 27 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 28 C -0.11 -2.15 5.97 31.67 0.19 -1.96 16 29 C 0.19 2.62 10.81 85.06 0.92 3.54 16 30 N -0.52 -8.62 8.98 -186.80 -1.68 -10.30 16 31 H 0.05 0.56 8.14 -2.39 -0.02 0.55 16 32 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.06 0.73 8.01 -2.39 -0.02 0.71 16 34 H 0.05 0.67 8.04 -2.39 -0.02 0.65 16 35 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.06 0.67 8.04 -2.39 -0.02 0.65 16 37 H 0.06 0.75 8.01 -2.39 -0.02 0.73 16 38 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 40 H 0.18 3.08 7.74 -2.91 -0.02 3.05 16 41 H 0.41 4.04 6.50 -92.70 -0.60 3.44 16 42 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.07 1.59 7.92 -2.39 -0.02 1.57 16 44 H 0.06 1.87 7.93 -2.39 -0.02 1.85 16 45 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.02 0.89 7.99 -2.39 -0.02 0.87 16 48 H 0.36 18.89 6.50 -92.71 -0.60 18.28 16 49 H 0.24 15.32 6.77 -92.71 -0.63 14.69 16 50 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 51 H 0.09 1.54 7.65 -2.39 -0.02 1.53 16 52 H 0.20 1.27 6.54 -2.91 -0.02 1.26 16 Total: -1.00 -74.57 417.74 2.05 -72.51 By element: Atomic # 1 Polarization: 29.70 SS G_CDS: -0.14 Total: 29.56 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: 7.49 Total: -4.04 kcal Atomic # 7 Polarization: -129.18 SS G_CDS: -7.29 Total: -136.46 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -0.06 Total: -15.64 kcal Atomic # 14 Polarization: 52.02 SS G_CDS: 2.05 Total: 54.07 kcal Total: -74.57 2.05 -72.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507422465.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.824 kcal (2) G-P(sol) polarization free energy of solvation -74.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 29.41 seconds