Wall clock time and date at job start Wed Apr 1 2020 04:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50699 * 109.47359 * 2 1 4 4 N 1.30291 * 126.34704 * 270.15284 * 3 2 1 5 5 N 1.28534 * 110.05518 * 180.31305 * 4 3 2 6 6 C 1.31220 * 109.85813 * 359.71739 * 5 4 3 7 7 N 1.38581 * 126.47470 * 179.97438 * 6 5 4 8 8 C 1.46900 * 110.99755 * 108.34550 * 7 6 5 9 9 C 1.50699 * 109.46978 * 300.36812 * 8 7 6 10 10 H 1.08001 * 120.00613 * 4.62409 * 9 8 7 11 11 C 1.37884 * 120.00014 * 184.62963 * 9 8 7 12 12 N 1.31512 * 119.99390 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 120.00107 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47240 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47444 * 119.99574 * 13 11 9 16 16 H 1.48497 * 109.47037 * 239.99887 * 13 11 9 17 17 C 1.46898 * 110.99626 * 344.39241 * 7 6 5 18 18 C 1.53006 * 109.46672 * 195.56576 * 17 7 6 19 19 C 1.52999 * 117.49749 * 243.57113 * 18 17 7 20 20 C 1.53002 * 117.49346 * 174.91323 * 18 17 7 21 21 N 1.36461 * 107.05344 * 0.02562 * 6 5 4 22 22 C 1.46493 * 127.13559 * 179.97438 * 21 6 5 23 23 C 1.50702 * 109.47328 * 275.51271 * 22 21 6 24 24 C 1.29981 * 118.56234 * 94.27292 * 23 22 21 25 25 C 1.50474 * 122.52389 * 180.42594 * 24 23 22 26 26 C 1.53129 * 109.54970 * 343.39460 * 25 24 23 27 27 O 1.43299 * 108.41442 * 47.82933 * 26 25 24 28 28 C 1.42902 * 113.02026 * 291.78437 * 27 26 25 29 29 H 1.08994 * 109.47402 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47164 * 300.00531 * 1 2 3 31 31 H 1.09001 * 109.47219 * 59.99567 * 1 2 3 32 32 H 1.09004 * 109.47164 * 239.99469 * 2 1 3 33 33 H 1.08999 * 109.46769 * 120.00189 * 2 1 3 34 34 H 1.09000 * 109.47253 * 60.36452 * 8 7 6 35 35 H 1.08997 * 109.46852 * 180.36896 * 8 7 6 36 36 H 0.97006 * 119.99776 * 179.97438 * 12 11 9 37 37 H 1.08995 * 109.47187 * 315.56235 * 17 7 6 38 38 H 1.08995 * 109.47430 * 75.56695 * 17 7 6 39 39 H 1.08994 * 115.55050 * 29.24548 * 18 17 7 40 40 H 1.08999 * 117.50236 * 0.02562 * 19 18 17 41 41 H 1.09004 * 117.49878 * 145.02197 * 19 18 17 42 42 H 1.09006 * 117.49452 * 214.97597 * 20 18 17 43 43 H 1.08989 * 117.50392 * 0.02562 * 20 18 17 44 44 H 1.08998 * 109.46921 * 155.51501 * 22 21 6 45 45 H 1.09004 * 109.47249 * 35.51645 * 22 21 6 46 46 H 1.07998 * 118.75040 * 0.43521 * 24 23 22 47 47 H 1.09002 * 109.49566 * 223.35608 * 25 24 23 48 48 H 1.09008 * 109.45050 * 103.40590 * 25 24 23 49 49 H 1.09001 * 109.67785 * 288.08949 * 26 25 24 50 50 H 1.09000 * 109.68407 * 167.57681 * 26 25 24 51 51 H 1.09003 * 109.35862 * 170.38870 * 28 27 26 52 52 H 1.09001 * 109.35594 * 289.97506 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2871 2.1497 -1.0494 5 7 2.7055 3.3104 -0.6889 6 6 2.7347 3.3867 0.6208 7 7 3.1302 4.4808 1.3737 8 6 1.9767 5.1173 2.0235 9 6 0.9966 5.5728 0.9733 10 1 1.1726 5.3406 -0.0667 11 6 -0.1248 6.2864 1.3400 12 7 -0.3393 6.5689 2.6063 13 14 -1.3400 6.8504 0.0382 14 1 -0.8727 6.4079 -1.3001 15 1 -2.6738 6.2603 0.3173 16 1 -1.4392 8.3318 0.0625 17 6 3.8697 5.4467 0.5502 18 6 4.6144 6.4268 1.4591 19 6 4.2105 7.9009 1.3895 20 6 5.5431 7.4430 0.7914 21 7 2.3030 2.1846 1.1014 22 6 2.1642 1.7920 2.5059 23 6 3.4916 1.3017 3.0241 24 6 4.2694 2.1443 3.6362 25 6 5.6167 1.7533 4.1804 26 6 5.7091 0.2275 4.2722 27 8 5.2575 -0.3288 3.0312 28 6 3.8584 -0.1392 2.8101 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 1.4918 4.4006 2.6863 35 1 2.3145 5.9768 2.6025 36 1 -1.1281 7.0712 2.8643 37 1 4.5865 4.9162 -0.0765 38 1 3.1713 5.9957 -0.0813 39 1 4.9146 6.0325 2.4298 40 1 3.4141 8.1725 0.6966 41 1 4.2454 8.4765 2.3145 42 1 6.4542 7.7175 1.3233 43 1 5.6233 7.4136 -0.2951 44 1 1.4250 0.9953 2.5890 45 1 1.8398 2.6513 3.0930 46 1 3.9360 3.1641 3.7592 47 1 5.7476 2.1852 5.1726 48 1 6.3979 2.1250 3.5172 49 1 5.0784 -0.1301 5.0860 50 1 6.7429 -0.0675 4.4522 51 1 3.6119 -0.4271 1.7881 52 1 3.2952 -0.7624 3.5048 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001546440451.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:13 Heat of formation + Delta-G solvation = 77.910087 kcal Electronic energy + Delta-G solvation = -32713.979818 eV Core-core repulsion = 28716.230134 eV Total energy + Delta-G solvation = -3997.749683 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.29737 -39.50063 -37.86059 -35.76928 -35.48880 -33.77757 -32.94393 -32.47812 -31.23598 -28.50654 -27.47841 -26.77125 -25.62220 -25.28024 -23.87035 -23.14036 -22.45412 -21.84937 -20.64666 -19.97960 -19.33679 -18.22407 -17.06112 -16.53322 -16.40248 -16.16673 -15.80964 -15.48607 -15.10489 -14.82029 -14.46124 -14.33423 -14.03879 -13.82542 -13.63025 -13.34318 -13.19339 -12.99348 -12.77287 -12.55154 -12.42980 -12.09247 -11.86786 -11.72347 -11.39806 -11.31175 -11.19852 -11.08465 -11.02790 -10.90447 -10.79904 -10.68609 -10.59418 -10.20315 -10.04604 -9.85714 -9.81974 -9.59661 -9.41124 -9.26442 -8.99326 -8.70643 -8.54967 -7.38804 -6.17034 -4.23216 1.90234 2.49370 3.06943 3.22427 3.31270 3.40757 3.62316 3.72727 4.26696 4.35793 4.55206 4.58135 4.64616 4.72446 4.82849 4.98123 5.02071 5.07031 5.16860 5.19988 5.29220 5.32588 5.34880 5.36477 5.43593 5.49972 5.53768 5.60570 5.63983 5.80223 5.81662 5.84091 5.86629 5.88729 6.00035 6.09990 6.19810 6.28760 6.37186 6.43290 6.44726 6.49260 6.63843 6.66935 6.79582 6.90747 6.99128 7.01485 7.26259 7.31682 7.59672 7.79773 8.03401 8.18062 8.86387 9.44392 9.53989 10.89505 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008755 B = 0.004841 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3197.423983 B = 5782.426147 C = 7402.459067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.028 4.028 3 C 0.152 3.848 4 N -0.288 5.288 5 N -0.338 5.338 6 C 0.416 3.584 7 N -0.464 5.464 8 C 0.193 3.807 9 C -0.548 4.548 10 H 0.068 0.932 11 C 0.071 3.929 12 N -0.890 5.890 13 Si 0.887 3.113 14 H -0.270 1.270 15 H -0.284 1.284 16 H -0.282 1.282 17 C 0.109 3.891 18 C -0.133 4.133 19 C -0.169 4.169 20 C -0.186 4.186 21 N -0.469 5.469 22 C 0.153 3.847 23 C -0.199 4.199 24 C -0.097 4.097 25 C -0.128 4.128 26 C 0.057 3.943 27 O -0.376 6.376 28 C 0.101 3.899 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.025 0.975 35 H 0.055 0.945 36 H 0.262 0.738 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.103 0.897 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.107 0.893 46 H 0.125 0.875 47 H 0.085 0.915 48 H 0.086 0.914 49 H 0.054 0.946 50 H 0.095 0.905 51 H 0.098 0.902 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.821 -11.468 5.520 15.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.067 4.067 3 C -0.116 4.116 4 N -0.127 5.127 5 N -0.181 5.181 6 C 0.060 3.940 7 N -0.188 5.188 8 C 0.069 3.931 9 C -0.587 4.587 10 H 0.086 0.914 11 C -0.132 4.132 12 N -0.529 5.529 13 Si 0.715 3.285 14 H -0.194 1.194 15 H -0.210 1.210 16 H -0.208 1.208 17 C -0.019 4.019 18 C -0.152 4.152 19 C -0.206 4.206 20 C -0.224 4.224 21 N -0.164 5.164 22 C 0.030 3.970 23 C -0.201 4.201 24 C -0.116 4.116 25 C -0.165 4.165 26 C -0.020 4.020 27 O -0.295 6.295 28 C 0.025 3.975 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.112 0.888 33 H 0.091 0.909 34 H 0.043 0.957 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.121 0.879 40 H 0.116 0.884 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.125 0.875 46 H 0.143 0.857 47 H 0.103 0.897 48 H 0.105 0.895 49 H 0.072 0.928 50 H 0.113 0.887 51 H 0.116 0.884 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.259 -11.205 4.440 15.199 hybrid contribution -1.733 0.682 0.527 1.935 sum 7.526 -10.523 4.967 13.858 Atomic orbital electron populations 1.21758 0.94034 1.01777 1.03039 1.19865 0.96316 0.87108 1.03455 1.24369 1.07019 0.97375 0.82848 1.73800 1.15188 0.99397 1.24310 1.74611 1.23365 1.12457 1.07714 1.22482 0.95749 0.86904 0.88899 1.59321 1.25498 1.06053 1.27908 1.19966 0.84642 0.94324 0.94159 1.21797 1.06854 1.35540 0.94494 0.91351 1.24866 0.97726 0.95405 0.95235 1.69934 1.27945 1.39610 1.15414 0.86586 0.81031 0.78457 0.82462 1.19450 1.21004 1.20775 1.21409 0.95614 0.91819 0.93035 1.22116 1.01784 0.90709 1.00589 1.22980 0.97555 0.97491 1.02604 1.22939 0.94200 1.05114 1.00142 1.45979 1.51900 1.11296 1.07197 1.20692 0.94890 1.02041 0.79397 1.21657 0.98168 0.97039 1.03195 1.22372 0.94208 0.99704 0.95298 1.21185 0.96325 0.96849 1.02106 1.22661 1.00350 0.92535 0.86432 1.88136 1.23537 1.78458 1.39323 1.21337 0.82211 0.92073 1.01874 0.91875 0.92636 0.91734 0.88845 0.90860 0.95724 0.92681 0.92801 0.91514 0.91375 0.87915 0.88426 0.89460 0.89456 0.89196 0.89050 0.87452 0.85668 0.89706 0.89535 0.92795 0.88667 0.88399 0.92059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.89 37.16 0.37 -1.39 16 2 C -0.03 -0.35 6.09 -27.89 -0.17 -0.52 16 3 C 0.15 2.74 7.32 -154.02 -1.13 1.61 16 4 N -0.29 -6.28 12.18 32.99 0.40 -5.88 16 5 N -0.34 -7.92 10.97 30.32 0.33 -7.58 16 6 C 0.42 8.92 5.76 -318.86 -1.84 7.08 16 7 N -0.46 -9.57 4.70 -175.88 -0.83 -10.40 16 8 C 0.19 4.54 4.91 -4.98 -0.02 4.52 16 9 C -0.55 -14.64 7.53 -34.44 -0.26 -14.90 16 10 H 0.07 1.96 6.48 -52.49 -0.34 1.62 16 11 C 0.07 1.93 5.46 -17.82 -0.10 1.83 16 12 N -0.89 -24.82 13.29 55.43 0.74 -24.09 16 13 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 14 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 17 C 0.11 2.16 4.59 -3.82 -0.02 2.14 16 18 C -0.13 -2.26 5.03 -90.62 -0.46 -2.72 16 19 C -0.17 -2.81 10.18 -26.69 -0.27 -3.08 16 20 C -0.19 -2.69 10.25 -26.69 -0.27 -2.97 16 21 N -0.47 -8.60 2.79 -115.37 -0.32 -8.92 16 22 C 0.15 2.26 5.95 -5.20 -0.03 2.23 16 23 C -0.20 -2.61 5.51 -101.01 -0.56 -3.17 16 24 C -0.10 -1.26 9.54 -35.85 -0.34 -1.60 16 25 C -0.13 -1.33 6.37 -27.93 -0.18 -1.51 16 26 C 0.06 0.55 6.89 37.22 0.26 0.81 16 27 O -0.38 -4.77 10.84 -35.23 -0.38 -5.15 16 28 C 0.10 1.18 6.74 35.77 0.24 1.42 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.07 0.74 6.04 -51.93 -0.31 0.43 16 34 H 0.02 0.61 6.01 -51.93 -0.31 0.30 16 35 H 0.06 1.37 7.38 -51.93 -0.38 0.99 16 36 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 37 H 0.07 1.33 7.78 -51.93 -0.40 0.92 16 38 H 0.07 1.54 6.32 -51.93 -0.33 1.22 16 39 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 40 H 0.10 1.78 8.03 -51.93 -0.42 1.37 16 41 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 42 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.09 1.11 7.60 -51.93 -0.39 0.72 16 45 H 0.11 1.77 5.72 -51.93 -0.30 1.47 16 46 H 0.13 1.81 7.84 -52.49 -0.41 1.40 16 47 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 48 H 0.09 0.96 8.14 -51.92 -0.42 0.54 16 49 H 0.05 0.46 8.10 -51.93 -0.42 0.04 16 50 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 51 H 0.10 1.15 6.42 -51.93 -0.33 0.82 16 52 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 413.37 15.07 6.23 6.23 Total: -1.00 -31.88 413.37 -12.19 -44.07 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -8.56 Total: 5.23 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -4.78 Total: -10.22 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: 0.32 Total: -56.87 kcal Atomic # 8 Polarization: -4.77 SS G_CDS: -0.38 Total: -5.15 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -31.88 -12.19 -44.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001546440451.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.982 kcal (2) G-P(sol) polarization free energy of solvation -31.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds