Wall clock time and date at job start Wed Apr 1 2020 04:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50699 * 109.47359 * 2 1 4 4 N 1.30291 * 126.34704 * 270.15284 * 3 2 1 5 5 N 1.28534 * 110.05518 * 180.31305 * 4 3 2 6 6 C 1.31220 * 109.85813 * 359.71739 * 5 4 3 7 7 N 1.38581 * 126.47470 * 179.97438 * 6 5 4 8 8 C 1.46900 * 110.99755 * 108.34550 * 7 6 5 9 9 C 1.50699 * 109.46978 * 300.36812 * 8 7 6 10 10 H 1.08001 * 120.00613 * 4.62409 * 9 8 7 11 11 C 1.37884 * 120.00014 * 184.62963 * 9 8 7 12 12 N 1.31512 * 119.99390 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 120.00107 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47240 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47444 * 119.99574 * 13 11 9 16 16 H 1.48497 * 109.47037 * 239.99887 * 13 11 9 17 17 C 1.46898 * 110.99626 * 344.39241 * 7 6 5 18 18 C 1.53006 * 109.46672 * 195.56576 * 17 7 6 19 19 C 1.52999 * 117.49749 * 243.57113 * 18 17 7 20 20 C 1.53002 * 117.49346 * 174.91323 * 18 17 7 21 21 N 1.36461 * 107.05344 * 0.02562 * 6 5 4 22 22 C 1.46493 * 127.13559 * 179.97438 * 21 6 5 23 23 C 1.50702 * 109.47328 * 275.51271 * 22 21 6 24 24 C 1.29981 * 118.56234 * 94.27292 * 23 22 21 25 25 C 1.50474 * 122.52389 * 180.42594 * 24 23 22 26 26 C 1.53129 * 109.54970 * 343.39460 * 25 24 23 27 27 O 1.43299 * 108.41442 * 47.82933 * 26 25 24 28 28 C 1.42902 * 113.02026 * 291.78437 * 27 26 25 29 29 H 1.08994 * 109.47402 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47164 * 300.00531 * 1 2 3 31 31 H 1.09001 * 109.47219 * 59.99567 * 1 2 3 32 32 H 1.09004 * 109.47164 * 239.99469 * 2 1 3 33 33 H 1.08999 * 109.46769 * 120.00189 * 2 1 3 34 34 H 1.09000 * 109.47253 * 60.36452 * 8 7 6 35 35 H 1.08997 * 109.46852 * 180.36896 * 8 7 6 36 36 H 0.97006 * 119.99776 * 179.97438 * 12 11 9 37 37 H 1.08995 * 109.47187 * 315.56235 * 17 7 6 38 38 H 1.08995 * 109.47430 * 75.56695 * 17 7 6 39 39 H 1.08994 * 115.55050 * 29.24548 * 18 17 7 40 40 H 1.08999 * 117.50236 * 0.02562 * 19 18 17 41 41 H 1.09004 * 117.49878 * 145.02197 * 19 18 17 42 42 H 1.09006 * 117.49452 * 214.97597 * 20 18 17 43 43 H 1.08989 * 117.50392 * 0.02562 * 20 18 17 44 44 H 1.08998 * 109.46921 * 155.51501 * 22 21 6 45 45 H 1.09004 * 109.47249 * 35.51645 * 22 21 6 46 46 H 1.07998 * 118.75040 * 0.43521 * 24 23 22 47 47 H 1.09002 * 109.49566 * 223.35608 * 25 24 23 48 48 H 1.09008 * 109.45050 * 103.40590 * 25 24 23 49 49 H 1.09001 * 109.67785 * 288.08949 * 26 25 24 50 50 H 1.09000 * 109.68407 * 167.57681 * 26 25 24 51 51 H 1.09003 * 109.35862 * 170.38870 * 28 27 26 52 52 H 1.09001 * 109.35594 * 289.97506 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2871 2.1497 -1.0494 5 7 2.7055 3.3104 -0.6889 6 6 2.7347 3.3867 0.6208 7 7 3.1302 4.4808 1.3737 8 6 1.9767 5.1173 2.0235 9 6 0.9966 5.5728 0.9733 10 1 1.1726 5.3406 -0.0667 11 6 -0.1248 6.2864 1.3400 12 7 -0.3393 6.5689 2.6063 13 14 -1.3400 6.8504 0.0382 14 1 -0.8727 6.4079 -1.3001 15 1 -2.6738 6.2603 0.3173 16 1 -1.4392 8.3318 0.0625 17 6 3.8697 5.4467 0.5502 18 6 4.6144 6.4268 1.4591 19 6 4.2105 7.9009 1.3895 20 6 5.5431 7.4430 0.7914 21 7 2.3030 2.1846 1.1014 22 6 2.1642 1.7920 2.5059 23 6 3.4916 1.3017 3.0241 24 6 4.2694 2.1443 3.6362 25 6 5.6167 1.7533 4.1804 26 6 5.7091 0.2275 4.2722 27 8 5.2575 -0.3288 3.0312 28 6 3.8584 -0.1392 2.8101 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 1.4918 4.4006 2.6863 35 1 2.3145 5.9768 2.6025 36 1 -1.1281 7.0712 2.8643 37 1 4.5865 4.9162 -0.0765 38 1 3.1713 5.9957 -0.0813 39 1 4.9146 6.0325 2.4298 40 1 3.4141 8.1725 0.6966 41 1 4.2454 8.4765 2.3145 42 1 6.4542 7.7175 1.3233 43 1 5.6233 7.4136 -0.2951 44 1 1.4250 0.9953 2.5890 45 1 1.8398 2.6513 3.0930 46 1 3.9360 3.1641 3.7592 47 1 5.7476 2.1852 5.1726 48 1 6.3979 2.1250 3.5172 49 1 5.0784 -0.1301 5.0860 50 1 6.7429 -0.0675 4.4522 51 1 3.6119 -0.4271 1.7881 52 1 3.2952 -0.7624 3.5048 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001546440451.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:11 Heat of formation + Delta-G solvation = 61.221171 kcal Electronic energy + Delta-G solvation = -32714.703503 eV Core-core repulsion = 28716.230134 eV Total energy + Delta-G solvation = -3998.473369 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 3.40 seconds Orbital eigenvalues (eV) -43.84490 -40.40737 -39.42998 -37.17365 -36.80234 -35.00592 -34.56467 -33.94179 -32.24964 -30.13249 -29.25016 -27.95170 -27.12694 -26.42396 -25.15500 -24.37994 -23.90231 -23.14953 -22.06437 -21.45158 -20.85132 -19.18601 -18.80854 -17.97401 -17.71420 -17.33477 -17.14658 -16.95067 -16.50450 -16.21854 -15.89445 -15.67506 -15.10275 -15.09122 -14.85360 -14.75564 -14.50898 -14.33596 -13.95211 -13.71275 -13.48759 -13.39339 -13.31145 -13.20839 -13.08593 -12.75278 -12.59119 -12.51672 -12.38142 -12.32085 -12.23780 -12.09398 -12.02975 -11.95682 -11.65818 -11.25984 -11.19117 -11.00297 -10.74838 -10.66814 -10.52483 -10.38452 -9.98685 -9.11888 -8.28273 -6.40421 0.79803 0.98559 1.23741 1.27905 1.40211 1.71553 1.99808 2.29792 2.89424 2.93035 3.01182 3.13067 3.47186 3.50988 3.57782 3.92291 3.96974 4.00653 4.03495 4.04947 4.17256 4.24727 4.28120 4.32475 4.35338 4.44916 4.45351 4.51382 4.53755 4.57004 4.64575 4.75493 4.80547 4.81832 4.92831 4.96285 4.99880 5.01685 5.06973 5.10969 5.18044 5.20516 5.23572 5.32171 5.32459 5.37712 5.44855 5.63702 5.74348 5.80080 5.90564 6.01844 6.15386 6.50169 6.73409 7.28887 7.93882 8.76324 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008755 B = 0.004841 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3197.423983 B = 5782.426147 C = 7402.459067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.028 4.028 3 C 0.171 3.829 4 N -0.333 5.333 5 N -0.375 5.375 6 C 0.394 3.606 7 N -0.448 5.448 8 C 0.215 3.785 9 C -0.552 4.552 10 H 0.043 0.957 11 C 0.033 3.967 12 N -0.910 5.910 13 Si 0.937 3.063 14 H -0.287 1.287 15 H -0.275 1.275 16 H -0.270 1.270 17 C 0.118 3.882 18 C -0.148 4.148 19 C -0.180 4.180 20 C -0.153 4.153 21 N -0.467 5.467 22 C 0.148 3.852 23 C -0.201 4.201 24 C -0.104 4.104 25 C -0.125 4.125 26 C 0.055 3.945 27 O -0.397 6.397 28 C 0.103 3.897 29 H 0.102 0.898 30 H 0.046 0.954 31 H 0.039 0.961 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.015 0.985 35 H 0.041 0.959 36 H 0.267 0.733 37 H 0.062 0.938 38 H 0.032 0.968 39 H 0.110 0.890 40 H 0.072 0.928 41 H 0.100 0.900 42 H 0.119 0.881 43 H 0.092 0.908 44 H 0.123 0.877 45 H 0.085 0.915 46 H 0.103 0.897 47 H 0.106 0.894 48 H 0.078 0.922 49 H 0.071 0.929 50 H 0.115 0.885 51 H 0.096 0.904 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.518 -13.450 6.897 17.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.067 4.067 3 C -0.098 4.098 4 N -0.172 5.172 5 N -0.219 5.219 6 C 0.036 3.964 7 N -0.171 5.171 8 C 0.091 3.909 9 C -0.591 4.591 10 H 0.061 0.939 11 C -0.168 4.168 12 N -0.550 5.550 13 Si 0.763 3.237 14 H -0.212 1.212 15 H -0.201 1.201 16 H -0.195 1.195 17 C -0.010 4.010 18 C -0.166 4.166 19 C -0.217 4.217 20 C -0.190 4.190 21 N -0.161 5.161 22 C 0.027 3.973 23 C -0.203 4.203 24 C -0.123 4.123 25 C -0.161 4.161 26 C -0.021 4.021 27 O -0.316 6.316 28 C 0.027 3.973 29 H 0.120 0.880 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.033 0.967 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.050 0.950 39 H 0.128 0.872 40 H 0.090 0.910 41 H 0.118 0.882 42 H 0.137 0.863 43 H 0.111 0.889 44 H 0.141 0.859 45 H 0.103 0.897 46 H 0.121 0.879 47 H 0.124 0.876 48 H 0.096 0.904 49 H 0.089 0.911 50 H 0.133 0.867 51 H 0.114 0.886 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 9.957 -13.193 5.827 17.525 hybrid contribution -1.958 1.246 0.083 2.323 sum 7.998 -11.946 5.909 15.544 Atomic orbital electron populations 1.21737 0.93190 1.03815 1.01391 1.20218 0.96806 0.83812 1.05892 1.25461 1.03770 0.98753 0.81807 1.73711 1.17653 0.99658 1.26162 1.74479 1.24447 1.13818 1.09119 1.22598 0.97000 0.87977 0.88826 1.59331 1.24062 1.05870 1.27881 1.19546 0.84824 0.93460 0.93114 1.21843 1.07767 1.35557 0.93905 0.93892 1.25410 0.98992 0.95637 0.96737 1.69983 1.28564 1.40147 1.16269 0.85828 0.79540 0.78667 0.79623 1.21236 1.20094 1.19518 1.21294 0.94716 0.91782 0.93215 1.22057 1.03387 0.90345 1.00837 1.22941 0.98589 0.97158 1.03028 1.23037 0.94090 1.01394 1.00518 1.46266 1.50828 1.10325 1.08704 1.20913 0.97092 1.02109 0.77204 1.21689 0.97160 0.98310 1.03095 1.22490 0.95577 0.98710 0.95560 1.21224 0.94163 0.97935 1.02824 1.22861 1.01880 0.91481 0.85879 1.88109 1.23977 1.78674 1.40833 1.21405 0.82382 0.90872 1.02626 0.87965 0.93531 0.94146 0.87360 0.87430 0.96708 0.94080 0.92398 0.91958 0.94955 0.87168 0.90971 0.88202 0.86269 0.88904 0.85928 0.89668 0.87931 0.87609 0.90359 0.91116 0.86686 0.88565 0.89152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 9.89 71.98 0.71 -2.38 16 2 C -0.03 -0.64 6.09 29.85 0.18 -0.46 16 3 C 0.17 6.13 7.32 137.64 1.01 7.14 16 4 N -0.33 -14.98 12.18 -49.54 -0.60 -15.58 16 5 N -0.38 -18.46 10.97 -58.00 -0.64 -19.10 16 6 C 0.39 17.58 5.76 260.11 1.50 19.08 16 7 N -0.45 -19.41 4.70 -710.36 -3.34 -22.75 16 8 C 0.22 10.63 4.91 85.56 0.42 11.05 16 9 C -0.55 -30.79 7.53 25.60 0.19 -30.60 16 10 H 0.04 2.61 6.48 -2.91 -0.02 2.59 16 11 C 0.03 1.85 5.46 84.66 0.46 2.32 16 12 N -0.91 -51.47 13.29 21.45 0.28 -51.19 16 13 Si 0.94 45.61 29.54 68.60 2.03 47.63 16 14 H -0.29 -14.65 7.11 99.48 0.71 -13.95 16 15 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 16 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 17 C 0.12 4.93 4.59 86.31 0.40 5.33 16 18 C -0.15 -5.10 5.03 -10.79 -0.05 -5.15 16 19 C -0.18 -6.05 10.18 30.62 0.31 -5.74 16 20 C -0.15 -4.24 10.25 30.62 0.31 -3.93 16 21 N -0.47 -17.30 2.79 -518.91 -1.45 -18.75 16 22 C 0.15 4.30 5.95 85.64 0.51 4.81 16 23 C -0.20 -5.01 5.51 -15.59 -0.09 -5.10 16 24 C -0.10 -2.64 9.54 26.63 0.25 -2.39 16 25 C -0.12 -2.38 6.37 29.82 0.19 -2.19 16 26 C 0.06 0.91 6.89 72.03 0.50 1.41 16 27 O -0.40 -9.00 10.84 -148.98 -1.62 -10.62 16 28 C 0.10 2.10 6.74 71.09 0.48 2.58 16 29 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.05 1.08 8.14 -2.39 -0.02 1.07 16 31 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.11 1.76 6.04 -2.39 -0.01 1.74 16 34 H 0.02 0.77 6.01 -2.39 -0.01 0.75 16 35 H 0.04 2.14 7.38 -2.39 -0.02 2.12 16 36 H 0.27 14.28 8.31 -92.70 -0.77 13.51 16 37 H 0.06 2.62 7.78 -2.39 -0.02 2.60 16 38 H 0.03 1.57 6.32 -2.39 -0.02 1.56 16 39 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 40 H 0.07 2.78 8.03 -2.39 -0.02 2.76 16 41 H 0.10 3.07 8.14 -2.38 -0.02 3.05 16 42 H 0.12 2.61 8.14 -2.38 -0.02 2.59 16 43 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 44 H 0.12 2.71 7.60 -2.39 -0.02 2.70 16 45 H 0.09 2.87 5.72 -2.38 -0.01 2.86 16 46 H 0.10 3.06 7.84 -2.91 -0.02 3.04 16 47 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 48 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 49 H 0.07 0.95 8.10 -2.39 -0.02 0.93 16 50 H 0.12 1.43 8.14 -2.39 -0.02 1.42 16 51 H 0.10 1.96 6.42 -2.39 -0.02 1.94 16 52 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -73.00 413.37 2.86 -70.14 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: 0.91 Total: 24.43 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: 7.29 Total: -4.23 kcal Atomic # 7 Polarization: -121.61 SS G_CDS: -5.74 Total: -127.36 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: -1.62 Total: -10.62 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.63 kcal Total: -73.00 2.86 -70.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001546440451.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.357 kcal (2) G-P(sol) polarization free energy of solvation -72.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.40 seconds