Wall clock time and date at job start Wed Apr 1 2020 05:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47044 * 2 1 4 4 C 1.53000 * 109.47008 * 239.99708 * 2 1 3 5 5 C 1.50703 * 109.47331 * 120.00076 * 2 1 3 6 6 N 1.31869 * 118.95364 * 59.99696 * 5 2 1 7 7 C 1.32144 * 120.96722 * 180.02562 * 6 5 2 8 8 C 1.39945 * 118.92491 * 359.97438 * 7 6 5 9 9 C 1.47841 * 120.93839 * 180.02562 * 8 7 6 10 10 O 1.21549 * 120.00007 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99630 * 180.27788 * 9 8 7 12 12 C 1.46504 * 119.99589 * 179.72688 * 11 9 8 13 13 C 1.52999 * 109.46648 * 175.12749 * 12 11 9 14 14 N 1.46505 * 110.01762 * 303.89781 * 13 12 11 15 15 C 1.36932 * 120.00003 * 301.46762 * 14 13 12 16 16 H 1.07999 * 120.00182 * 354.60612 * 15 14 13 17 17 C 1.38815 * 120.00017 * 174.60781 * 15 14 13 18 18 N 1.31617 * 119.99706 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00156 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47334 * 59.99616 * 19 17 15 21 21 H 1.48500 * 109.47136 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.46792 * 299.99716 * 19 17 15 23 23 C 1.54269 * 110.02906 * 182.46085 * 13 12 11 24 24 C 1.54892 * 104.19684 * 217.10496 * 23 13 12 25 25 C 1.54888 * 102.74411 * 37.94051 * 24 23 13 26 26 C 1.53867 * 110.03456 * 65.29487 * 13 12 11 27 27 C 1.39942 * 118.12229 * 0.27571 * 8 7 6 28 28 N 1.31874 * 118.95285 * 240.02509 * 5 2 1 29 29 H 1.09003 * 109.47141 * 299.99661 * 1 2 3 30 30 H 1.08997 * 109.47466 * 59.99753 * 1 2 3 31 31 H 1.09003 * 109.47377 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46991 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.47200 * 299.99861 * 3 2 1 34 34 H 1.08997 * 109.47514 * 60.00393 * 3 2 1 35 35 H 1.08994 * 109.47486 * 299.99934 * 4 2 1 36 36 H 1.08996 * 109.47015 * 60.00274 * 4 2 1 37 37 H 1.08997 * 109.46921 * 179.97438 * 4 2 1 38 38 H 1.08001 * 120.53703 * 179.97438 * 7 6 5 39 39 H 0.96994 * 120.00175 * 359.72530 * 11 9 8 40 40 H 1.08996 * 109.47089 * 295.12569 * 12 11 9 41 41 H 1.09001 * 109.47165 * 55.12366 * 12 11 9 42 42 H 0.96993 * 119.99416 * 121.46557 * 14 13 12 43 43 H 0.97001 * 120.00211 * 180.02562 * 18 17 15 44 44 H 1.09003 * 110.48810 * 335.78262 * 23 13 12 45 45 H 1.09004 * 110.48907 * 98.42113 * 23 13 12 46 46 H 1.08997 * 110.75217 * 279.62861 * 24 23 13 47 47 H 1.08998 * 110.75892 * 156.25431 * 24 23 13 48 48 H 1.09007 * 110.48154 * 203.38281 * 25 24 23 49 49 H 1.08994 * 110.48869 * 80.73905 * 25 24 23 50 50 H 1.09000 * 110.03300 * 238.56402 * 26 13 12 51 51 H 1.08999 * 110.03236 * 359.97438 * 26 13 12 52 52 H 1.08002 * 120.53893 * 179.70261 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0324 -0.7104 1.2305 6 7 1.7012 -1.9729 1.4186 7 6 2.1191 -2.6340 2.4837 8 6 2.9249 -1.9729 3.4176 9 6 3.4177 -2.6699 4.6247 10 8 3.1245 -3.8337 4.8169 11 7 4.1881 -2.0132 5.5146 12 6 4.6715 -2.7021 6.7138 13 6 5.6148 -1.7785 7.4871 14 7 6.7094 -1.3385 6.6184 15 6 7.5320 -2.2629 6.0320 16 1 7.4297 -3.3096 6.2775 17 6 8.4974 -1.8546 5.1219 18 7 8.6218 -0.5791 4.8224 19 14 9.6191 -3.1158 4.3214 20 1 8.8008 -4.0945 3.5614 21 1 10.5549 -2.4288 3.3953 22 1 10.3930 -3.8266 5.3706 23 6 6.1801 -2.5130 8.7203 24 6 6.2479 -1.4198 9.8155 25 6 4.9626 -0.5955 9.5556 26 6 4.8407 -0.5593 8.0182 27 6 3.2465 -0.6320 3.1794 28 7 2.7887 -0.0496 2.0850 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2492 36 1 1.6766 -0.2075 -2.1392 37 1 3.1299 -0.7209 -1.2494 38 1 1.8434 -3.6678 2.6311 39 1 4.4223 -1.0846 5.3611 40 1 3.8246 -2.9684 7.3462 41 1 5.2060 -3.6063 6.4227 42 1 6.8514 -0.3924 6.4587 43 1 9.2962 -0.2938 4.1861 44 1 5.5108 -3.3175 9.0252 45 1 7.1756 -2.9034 8.5087 46 1 7.1361 -0.8008 9.6888 47 1 6.2258 -1.8668 10.8094 48 1 5.0697 0.4136 9.9536 49 1 4.0967 -1.0903 9.9953 50 1 5.2800 0.3598 7.6304 51 1 3.7931 -0.6254 7.7247 52 1 3.8617 -0.0829 3.8768 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568247893.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:53:54 Heat of formation + Delta-G solvation = 4.819294 kcal Electronic energy + Delta-G solvation = -31236.243044 eV Core-core repulsion = 27235.323906 eV Total energy + Delta-G solvation = -4000.919138 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 24.31 seconds Orbital eigenvalues (eV) -41.37864 -39.43233 -38.18457 -36.74824 -34.40116 -33.79054 -33.34563 -31.72185 -30.56817 -28.33165 -27.91818 -27.47744 -27.45382 -25.51244 -24.51340 -24.00739 -23.14180 -21.01935 -20.23694 -19.77391 -18.83384 -17.80137 -17.50942 -16.99781 -16.47689 -15.70537 -15.37255 -15.19230 -14.73870 -14.57074 -14.54525 -14.23128 -14.08033 -13.84048 -13.72108 -13.46855 -13.37071 -12.83406 -12.71167 -12.42231 -12.33292 -12.01451 -11.89024 -11.78552 -11.50263 -11.21039 -11.17129 -11.15565 -11.06383 -10.88220 -10.81575 -10.78485 -10.69174 -10.58290 -10.30587 -10.18969 -9.93308 -9.70351 -9.68126 -9.53939 -9.28816 -8.96348 -8.56854 -7.07529 -5.85899 -3.15296 0.45395 1.01912 3.02601 3.39239 3.42638 3.44472 3.46420 3.65206 3.82652 4.00606 4.46855 4.52196 4.73089 4.77907 4.79603 4.85213 4.98433 5.04916 5.13970 5.18025 5.24594 5.45069 5.47983 5.50520 5.61508 5.64202 5.68969 5.70008 5.73366 5.77676 5.82424 5.87827 5.88991 5.94934 6.03574 6.11146 6.11452 6.19285 6.25228 6.26995 6.28607 6.36685 6.49085 6.52007 6.71328 6.75848 6.85589 6.88083 7.00242 7.65616 7.84263 7.97854 8.32456 8.47824 9.44628 9.97383 10.32763 11.35798 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010176 B = 0.003229 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2750.939708 B = 8670.362806 C = 9923.443329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.002 4.002 3 C -0.130 4.130 4 C -0.137 4.137 5 C 0.339 3.661 6 N -0.518 5.518 7 C 0.204 3.796 8 C -0.238 4.238 9 C 0.564 3.436 10 O -0.546 6.546 11 N -0.689 5.689 12 C 0.119 3.881 13 C 0.188 3.812 14 N -0.711 5.711 15 C -0.236 4.236 16 H 0.069 0.931 17 C -0.006 4.006 18 N -0.930 5.930 19 Si 0.900 3.100 20 H -0.287 1.287 21 H -0.292 1.292 22 H -0.285 1.285 23 C -0.131 4.131 24 C -0.117 4.117 25 C -0.120 4.120 26 C -0.127 4.127 27 C 0.189 3.811 28 N -0.512 5.512 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.055 0.945 38 H 0.180 0.820 39 H 0.401 0.599 40 H 0.054 0.946 41 H 0.071 0.929 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.053 0.947 45 H 0.079 0.921 46 H 0.067 0.933 47 H 0.054 0.946 48 H 0.058 0.942 49 H 0.059 0.941 50 H 0.069 0.931 51 H 0.060 0.940 52 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.018 3.537 -2.664 15.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.004 4.004 3 C -0.187 4.187 4 C -0.195 4.195 5 C 0.072 3.928 6 N -0.231 5.231 7 C 0.037 3.963 8 C -0.245 4.245 9 C 0.348 3.652 10 O -0.426 6.426 11 N -0.338 5.338 12 C -0.006 4.006 13 C 0.096 3.904 14 N -0.353 5.353 15 C -0.367 4.367 16 H 0.087 0.913 17 C -0.202 4.202 18 N -0.578 5.578 19 Si 0.731 3.269 20 H -0.213 1.213 21 H -0.218 1.218 22 H -0.212 1.212 23 C -0.172 4.172 24 C -0.155 4.155 25 C -0.158 4.158 26 C -0.165 4.165 27 C 0.022 3.978 28 N -0.225 5.225 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.197 0.803 39 H 0.237 0.763 40 H 0.073 0.927 41 H 0.089 0.911 42 H 0.219 0.781 43 H 0.065 0.935 44 H 0.071 0.929 45 H 0.098 0.902 46 H 0.086 0.914 47 H 0.073 0.927 48 H 0.077 0.923 49 H 0.077 0.923 50 H 0.088 0.912 51 H 0.079 0.921 52 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -15.423 3.066 -3.404 16.089 hybrid contribution 1.448 -0.483 0.226 1.543 sum -13.975 2.583 -3.177 14.563 Atomic orbital electron populations 1.21838 0.92459 1.02946 1.02055 1.19436 0.96275 0.95257 0.89391 1.21731 1.02093 0.93152 1.01748 1.21849 1.01270 1.00966 0.95386 1.23322 0.88217 0.87125 0.94112 1.68260 1.24116 1.09361 1.21356 1.23447 0.86999 0.99995 0.85829 1.21892 1.04985 0.97452 1.00190 1.17693 0.79185 0.86138 0.82140 1.90745 1.59156 1.16114 1.76577 1.45628 1.49647 1.15842 1.22710 1.21970 0.96534 0.97005 0.85124 1.20473 0.88067 0.91772 0.90104 1.42548 1.31603 1.06478 1.54622 1.19027 1.10236 0.89850 1.17589 0.91292 1.24670 0.99948 0.95878 0.99718 1.69626 1.37027 1.13336 1.37790 0.86385 0.80639 0.80675 0.79226 1.21341 1.21750 1.21211 1.22822 1.02096 0.97077 0.95163 1.22385 0.97706 0.97593 0.97777 1.22297 0.98047 0.99662 0.95800 1.22447 0.99628 0.98838 0.95612 1.23574 0.90996 0.90754 0.92491 1.68303 1.11487 1.39249 1.03467 0.92735 0.91532 0.91397 0.91710 0.92360 0.91873 0.91382 0.91523 0.92556 0.80323 0.76345 0.92746 0.91098 0.78101 0.93474 0.92872 0.90226 0.91376 0.92685 0.92321 0.92257 0.91225 0.92091 0.80926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.22 8.37 37.16 0.31 -0.91 16 2 C 0.00 -0.02 0.92 -155.66 -0.14 -0.16 16 3 C -0.13 -1.29 7.66 37.16 0.28 -1.00 16 4 C -0.14 -1.34 8.37 37.16 0.31 -1.03 16 5 C 0.34 4.62 6.25 -157.06 -0.98 3.64 16 6 N -0.52 -7.26 9.77 -10.39 -0.10 -7.36 16 7 C 0.20 2.94 10.88 -16.78 -0.18 2.76 16 8 C -0.24 -3.63 5.91 -104.69 -0.62 -4.25 16 9 C 0.56 9.80 7.79 -12.33 -0.10 9.70 16 10 O -0.55 -10.90 16.44 5.32 0.09 -10.81 16 11 N -0.69 -11.54 5.06 -61.25 -0.31 -11.85 16 12 C 0.12 2.08 3.99 -4.04 -0.02 2.07 16 13 C 0.19 3.22 0.68 -130.70 -0.09 3.13 16 14 N -0.71 -15.28 4.76 -46.20 -0.22 -15.50 16 15 C -0.24 -5.92 8.39 -15.06 -0.13 -6.04 16 16 H 0.07 1.75 7.23 -52.49 -0.38 1.37 16 17 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 18 N -0.93 -26.11 13.06 55.49 0.72 -25.39 16 19 Si 0.90 21.92 29.55 -169.99 -5.02 16.90 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 23 C -0.13 -2.15 5.94 -25.07 -0.15 -2.30 16 24 C -0.12 -1.67 6.91 -24.74 -0.17 -1.84 16 25 C -0.12 -1.54 6.83 -25.07 -0.17 -1.71 16 26 C -0.13 -1.82 5.80 -25.62 -0.15 -1.97 16 27 C 0.19 2.72 10.81 -16.78 -0.18 2.54 16 28 N -0.51 -7.40 8.98 -10.39 -0.09 -7.49 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.65 8.01 -51.93 -0.42 0.23 16 32 H 0.06 0.72 8.04 -51.93 -0.42 0.31 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.65 8.04 -51.93 -0.42 0.24 16 35 H 0.07 0.70 8.01 -51.93 -0.42 0.28 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.18 2.34 7.74 -52.49 -0.41 1.93 16 39 H 0.40 6.34 6.13 -40.82 -0.25 6.09 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.07 1.44 7.49 -51.93 -0.39 1.05 16 42 H 0.38 8.87 7.28 -40.82 -0.30 8.57 16 43 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 44 H 0.05 0.79 7.85 -51.93 -0.41 0.38 16 45 H 0.08 1.51 7.12 -51.93 -0.37 1.14 16 46 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.07 1.03 7.44 -51.93 -0.39 0.65 16 51 H 0.06 0.80 7.54 -51.93 -0.39 0.40 16 52 H 0.17 2.24 6.54 -52.49 -0.34 1.90 16 LS Contribution 414.11 15.07 6.24 6.24 Total: -1.00 -29.59 414.11 -9.61 -39.19 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: -8.65 Total: 13.70 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: -2.26 Total: 2.37 kcal Atomic # 7 Polarization: -67.59 SS G_CDS: 0.00 Total: -67.59 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.09 Total: -10.81 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -29.59 -9.61 -39.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568247893.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.012 kcal (2) G-P(sol) polarization free energy of solvation -29.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 24.31 seconds