Wall clock time and date at job start Wed Apr 1 2020 04:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.47288 * 2 1 4 4 N 1.30500 * 125.64968 * 269.95852 * 3 2 1 5 5 C 1.34128 * 109.25953 * 180.02562 * 4 3 2 6 6 C 1.34670 * 108.01684 * 359.73496 * 5 4 3 7 7 N 1.35044 * 125.65265 * 89.99579 * 3 2 1 8 8 C 1.46502 * 126.39377 * 359.96932 * 7 3 2 9 9 H 1.08994 * 109.47345 * 359.97438 * 8 7 3 10 10 C 1.52990 * 109.47078 * 239.99328 * 8 7 3 11 11 C 1.53001 * 109.46730 * 119.99663 * 8 7 3 12 12 C 1.50701 * 109.46843 * 184.99900 * 11 8 7 13 13 O 1.21280 * 120.00411 * 359.97438 * 12 11 8 14 14 N 1.34785 * 119.99880 * 180.02562 * 12 11 8 15 15 C 1.46502 * 119.99694 * 179.97438 * 14 12 11 16 16 C 1.53001 * 109.47000 * 180.02562 * 15 14 12 17 17 H 1.09006 * 115.51170 * 330.58435 * 16 15 14 18 18 C 1.52997 * 117.44567 * 185.17098 * 16 15 14 19 19 H 1.09004 * 119.53650 * 4.15858 * 18 16 15 20 20 C 1.54384 * 118.12635 * 160.85139 * 18 16 15 21 21 N 1.47827 * 104.69249 * 87.25276 * 20 18 16 22 22 C 1.36930 * 127.86364 * 140.39168 * 21 20 18 23 23 H 1.08001 * 120.00065 * 195.61293 * 22 21 20 24 24 C 1.38810 * 120.00157 * 15.60659 * 22 21 20 25 25 N 1.31618 * 119.99919 * 9.01509 * 24 22 21 26 26 Si 1.86804 * 120.00157 * 189.01159 * 24 22 21 27 27 H 1.48502 * 109.46815 * 94.46406 * 26 24 22 28 28 H 1.48500 * 109.46898 * 214.46187 * 26 24 22 29 29 H 1.48495 * 109.47078 * 334.45861 * 26 24 22 30 30 C 1.48147 * 104.29621 * 320.39748 * 21 20 18 31 31 C 1.53001 * 117.44328 * 115.99969 * 16 15 14 32 32 H 1.08996 * 119.53597 * 355.84081 * 31 16 15 33 33 H 1.09000 * 109.47304 * 300.00173 * 1 2 3 34 34 H 1.09002 * 109.47348 * 59.99875 * 1 2 3 35 35 H 1.09000 * 109.47389 * 180.02562 * 1 2 3 36 36 H 1.09000 * 109.47304 * 239.99827 * 2 1 3 37 37 H 1.09002 * 109.47348 * 120.00125 * 2 1 3 38 38 H 1.07992 * 125.99130 * 179.97438 * 5 4 3 39 39 H 1.08003 * 126.59147 * 180.28831 * 6 5 4 40 40 H 1.09003 * 109.47743 * 300.00638 * 10 8 7 41 41 H 1.09006 * 109.47254 * 60.00254 * 10 8 7 42 42 H 1.09003 * 109.47461 * 180.02562 * 10 8 7 43 43 H 1.09003 * 109.47223 * 65.00303 * 11 8 7 44 44 H 1.08996 * 109.47650 * 304.99899 * 11 8 7 45 45 H 0.96992 * 119.99787 * 0.02562 * 14 12 11 46 46 H 1.09003 * 109.46722 * 60.00269 * 15 14 12 47 47 H 1.08996 * 109.47343 * 300.00360 * 15 14 12 48 48 H 1.09001 * 110.41097 * 205.97636 * 20 18 16 49 49 H 1.09004 * 110.40443 * 328.40505 * 20 18 16 50 50 H 0.97002 * 120.00349 * 179.97438 * 25 24 22 51 51 H 1.09007 * 110.40731 * 280.80290 * 30 21 20 52 52 H 1.09005 * 110.40520 * 158.37703 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2866 2.1376 -1.0604 5 6 2.7158 3.3507 -0.6820 6 6 2.7224 3.3889 0.6642 7 7 2.2947 2.1629 1.0973 8 6 2.1434 1.7374 2.4910 9 1 1.7793 0.7105 2.5199 10 6 1.1423 2.6531 3.1980 11 6 3.4974 1.8191 3.1989 12 6 3.3684 1.2663 4.5949 13 8 2.2989 0.8487 4.9854 14 7 4.4416 1.2371 5.4099 15 6 4.3160 0.7002 6.7672 16 6 5.6697 0.7829 7.4756 17 1 6.5436 0.7174 6.8273 18 6 5.7762 0.1581 8.8680 19 1 4.9234 -0.3795 9.2825 20 6 7.1826 -0.1770 9.4097 21 7 7.6399 1.0686 10.0614 22 6 8.3379 1.1971 11.2324 23 1 8.3926 2.1561 11.7260 24 6 8.9750 0.0947 11.7853 25 7 9.0606 -1.0271 11.1021 26 14 9.7111 0.2032 13.4987 27 1 8.7276 -0.2973 14.4925 28 1 10.9429 -0.6238 13.5615 29 1 10.0479 1.6168 13.8041 30 6 7.1714 2.1466 9.1597 31 6 5.7688 1.6907 8.7032 32 1 4.9105 2.2960 8.9946 33 1 -0.3634 0.5139 0.8900 34 1 -0.3634 0.5139 -0.8900 35 1 -0.3634 -1.0276 0.0005 36 1 1.8933 -0.5139 -0.8900 37 1 1.8933 -0.5139 0.8900 38 1 3.0019 4.1568 -1.3411 39 1 3.0119 4.2253 1.2831 40 1 1.5060 3.6803 3.1691 41 1 0.1777 2.5950 2.6937 42 1 1.0301 2.3368 4.2351 43 1 3.8194 2.8593 3.2483 44 1 4.2332 1.2369 2.6442 45 1 5.2967 1.5721 5.0980 46 1 3.9942 -0.3400 6.7181 47 1 3.5801 1.2825 7.3216 48 1 7.1267 -0.9865 10.1375 49 1 7.8508 -0.4458 8.5916 50 1 9.5061 -1.7974 11.4882 51 1 7.8380 2.2415 8.3024 52 1 7.1071 3.0918 9.6987 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570924019.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:08 Heat of formation + Delta-G solvation = 72.666085 kcal Electronic energy + Delta-G solvation = -29558.621754 eV Core-core repulsion = 25560.644674 eV Total energy + Delta-G solvation = -3997.977080 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.50476 -40.18234 -38.89948 -36.16905 -35.06895 -34.14956 -33.45849 -31.36839 -30.85010 -28.95654 -28.88762 -27.22821 -26.95427 -24.91551 -24.22280 -23.34129 -21.52376 -21.23818 -20.75120 -19.83847 -19.56603 -19.33540 -17.85355 -16.97315 -16.77466 -16.32207 -15.99254 -15.60412 -15.21758 -14.88215 -14.58903 -14.48558 -14.32440 -14.10977 -13.83848 -13.75428 -13.43691 -13.30841 -13.22653 -12.91600 -12.75992 -12.63572 -12.22578 -12.00204 -11.95570 -11.90563 -11.66907 -11.42909 -11.32749 -11.17360 -10.89432 -10.72486 -10.41481 -10.34230 -10.17622 -10.11398 -9.90116 -9.80578 -9.52894 -9.23632 -9.07768 -8.70112 -8.63710 -6.93368 -5.85728 -3.20505 1.74432 2.26685 2.31314 2.88638 3.00587 3.34139 3.39669 3.41662 3.97314 4.03108 4.07999 4.23202 4.36178 4.41329 4.51577 4.65322 4.77043 4.80766 4.88941 4.91519 5.00694 5.04135 5.19913 5.23355 5.27026 5.30082 5.35449 5.38110 5.41504 5.43149 5.49734 5.64630 5.68693 5.76702 5.77978 5.81159 5.82315 5.88165 6.06214 6.14806 6.19384 6.46665 6.49979 6.57506 6.62190 6.83599 6.89608 7.21852 7.28910 7.46835 7.65972 7.85081 7.90330 8.15330 9.05497 9.67901 10.44401 11.28483 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.028048 B = 0.001570 C = 0.001551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.047945 B =17829.151238 C =18050.079778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.041 4.041 3 C 0.210 3.790 4 N -0.492 5.492 5 C -0.030 4.030 6 C -0.057 4.057 7 N -0.449 5.449 8 C 0.147 3.853 9 H 0.112 0.888 10 C -0.166 4.166 11 C -0.153 4.153 12 C 0.517 3.483 13 O -0.540 6.540 14 N -0.719 5.719 15 C 0.154 3.846 16 C -0.152 4.152 17 H 0.103 0.897 18 C -0.160 4.160 19 H 0.103 0.897 20 C 0.183 3.817 21 N -0.594 5.594 22 C -0.229 4.229 23 H 0.077 0.923 24 C -0.005 4.005 25 N -0.915 5.915 26 Si 0.913 3.087 27 H -0.288 1.288 28 H -0.290 1.290 29 H -0.279 1.279 30 C 0.153 3.847 31 C -0.171 4.171 32 H 0.103 0.897 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.168 0.832 39 H 0.171 0.829 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.098 0.902 43 H 0.103 0.897 44 H 0.102 0.898 45 H 0.403 0.597 46 H 0.072 0.928 47 H 0.069 0.931 48 H 0.091 0.909 49 H 0.023 0.977 50 H 0.255 0.745 51 H 0.024 0.976 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.019 5.691 -20.909 26.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.080 4.080 3 C -0.053 4.053 4 N -0.211 5.211 5 C -0.178 4.178 6 C -0.189 4.189 7 N -0.132 5.132 8 C 0.044 3.956 9 H 0.129 0.871 10 C -0.223 4.223 11 C -0.194 4.194 12 C 0.303 3.697 13 O -0.418 6.418 14 N -0.370 5.370 15 C 0.031 3.969 16 C -0.171 4.171 17 H 0.121 0.879 18 C -0.181 4.181 19 H 0.121 0.879 20 C 0.057 3.943 21 N -0.317 5.317 22 C -0.357 4.357 23 H 0.095 0.905 24 C -0.202 4.202 25 N -0.562 5.562 26 Si 0.743 3.257 27 H -0.215 1.215 28 H -0.216 1.216 29 H -0.205 1.205 30 C 0.027 3.973 31 C -0.191 4.191 32 H 0.121 0.879 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.113 0.887 37 H 0.096 0.904 38 H 0.185 0.815 39 H 0.188 0.812 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.117 0.883 43 H 0.121 0.879 44 H 0.120 0.880 45 H 0.238 0.762 46 H 0.090 0.910 47 H 0.087 0.913 48 H 0.109 0.891 49 H 0.041 0.959 50 H 0.065 0.935 51 H 0.041 0.959 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -15.693 4.970 -21.059 26.729 hybrid contribution 1.045 0.679 1.561 1.997 sum -14.649 5.649 -19.498 25.034 Atomic orbital electron populations 1.21742 0.93851 1.02401 1.02507 1.19991 0.96557 0.87438 1.04047 1.23291 1.03971 0.96655 0.81342 1.70244 1.18253 1.04343 1.28259 1.22270 1.06498 0.96230 0.92779 1.22617 1.09583 0.89979 0.96754 1.45613 1.48921 1.11629 1.07036 1.21154 0.95333 1.01617 0.77514 0.87056 1.22282 0.98217 0.98794 1.03014 1.22005 0.98816 1.04346 0.94215 1.20182 0.84167 0.78791 0.86588 1.90703 1.27049 1.47623 1.76448 1.46043 1.12535 1.63632 1.14830 1.20912 0.96220 0.99127 0.80615 1.22529 0.96742 1.06362 0.91461 0.87925 1.24230 1.02584 0.96163 0.95130 0.87865 1.21017 0.86258 0.91308 0.95673 1.45129 1.63631 1.00312 1.22617 1.19013 1.24199 0.96263 0.96195 0.90527 1.24906 0.99393 0.96731 0.99211 1.69893 1.47220 1.02699 1.36347 0.86085 0.78375 0.77423 0.83772 1.21486 1.21629 1.20472 1.21146 0.90143 0.92855 0.93149 1.23977 1.00438 0.94482 1.00195 0.87934 0.92769 0.91891 0.91499 0.88676 0.90378 0.81478 0.81163 0.92190 0.91906 0.88341 0.87919 0.88018 0.76204 0.90963 0.91283 0.89130 0.95918 0.93516 0.95862 0.93170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.89 37.16 0.37 -0.58 16 2 C -0.04 -0.30 6.08 -27.89 -0.17 -0.47 16 3 C 0.21 2.03 7.16 -155.42 -1.11 0.92 16 4 N -0.49 -5.68 11.25 -10.82 -0.12 -5.80 16 5 C -0.03 -0.28 11.87 -17.81 -0.21 -0.50 16 6 C -0.06 -0.45 10.70 -16.56 -0.18 -0.63 16 7 N -0.45 -3.75 2.61 -106.84 -0.28 -4.03 16 8 C 0.15 1.09 2.64 -67.93 -0.18 0.91 16 9 H 0.11 0.87 6.48 -51.93 -0.34 0.54 16 10 C -0.17 -1.24 8.99 37.15 0.33 -0.91 16 11 C -0.15 -1.01 5.19 -27.88 -0.14 -1.16 16 12 C 0.52 4.90 7.55 -10.98 -0.08 4.82 16 13 O -0.54 -6.81 13.96 5.56 0.08 -6.74 16 14 N -0.72 -6.70 5.56 -60.29 -0.33 -7.04 16 15 C 0.15 1.82 5.95 -4.04 -0.02 1.79 16 16 C -0.15 -2.12 5.40 -90.62 -0.49 -2.60 16 17 H 0.10 1.42 8.04 -51.93 -0.42 1.01 16 18 C -0.16 -2.86 6.85 -89.30 -0.61 -3.47 16 19 H 0.10 1.75 8.14 -51.93 -0.42 1.32 16 20 C 0.18 4.24 5.69 -2.59 -0.01 4.22 16 21 N -0.59 -14.77 3.37 -169.12 -0.57 -15.34 16 22 C -0.23 -6.24 10.35 -15.06 -0.16 -6.40 16 23 H 0.08 2.02 7.84 -52.49 -0.41 1.61 16 24 C -0.01 -0.14 5.40 -17.43 -0.09 -0.24 16 25 N -0.92 -26.30 10.86 55.49 0.60 -25.70 16 26 Si 0.91 21.56 29.56 -169.99 -5.03 16.53 16 27 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 28 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 29 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 30 C 0.15 3.06 7.03 -2.41 -0.02 3.04 16 31 C -0.17 -2.82 6.74 -89.29 -0.60 -3.42 16 32 H 0.10 1.56 8.12 -51.93 -0.42 1.14 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.48 7.08 -51.93 -0.37 0.11 16 38 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 39 H 0.17 0.91 8.06 -52.48 -0.42 0.49 16 40 H 0.06 0.40 7.95 -51.93 -0.41 -0.01 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.10 0.90 5.95 -51.93 -0.31 0.59 16 43 H 0.10 0.53 8.09 -51.93 -0.42 0.11 16 44 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.40 2.94 8.40 -40.82 -0.34 2.60 16 46 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.07 0.86 7.93 -51.93 -0.41 0.45 16 48 H 0.09 2.37 6.50 -51.93 -0.34 2.03 16 49 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 51 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 52 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 418.34 15.07 6.30 6.30 Total: -1.00 -32.77 418.34 -11.55 -44.32 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -8.82 Total: 2.15 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: -3.38 Total: -4.66 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: -0.70 Total: -57.91 kcal Atomic # 8 Polarization: -6.81 SS G_CDS: 0.08 Total: -6.74 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -32.77 -11.55 -44.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570924019.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.985 kcal (2) G-P(sol) polarization free energy of solvation -32.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds