Wall clock time and date at job start Wed Apr 1 2020 04:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.47288 * 2 1 4 4 N 1.30500 * 125.64968 * 269.95852 * 3 2 1 5 5 C 1.34128 * 109.25953 * 180.02562 * 4 3 2 6 6 C 1.34670 * 108.01684 * 359.73496 * 5 4 3 7 7 N 1.35044 * 125.65265 * 89.99579 * 3 2 1 8 8 C 1.46502 * 126.39377 * 359.96932 * 7 3 2 9 9 H 1.08994 * 109.47345 * 359.97438 * 8 7 3 10 10 C 1.52990 * 109.47078 * 239.99328 * 8 7 3 11 11 C 1.53001 * 109.46730 * 119.99663 * 8 7 3 12 12 C 1.50701 * 109.46843 * 184.99900 * 11 8 7 13 13 O 1.21280 * 120.00411 * 359.97438 * 12 11 8 14 14 N 1.34785 * 119.99880 * 180.02562 * 12 11 8 15 15 C 1.46502 * 119.99694 * 179.97438 * 14 12 11 16 16 C 1.53001 * 109.47000 * 180.02562 * 15 14 12 17 17 H 1.09006 * 115.51170 * 330.58435 * 16 15 14 18 18 C 1.52997 * 117.44567 * 185.17098 * 16 15 14 19 19 H 1.09004 * 119.53650 * 4.15858 * 18 16 15 20 20 C 1.54384 * 118.12635 * 160.85139 * 18 16 15 21 21 N 1.47827 * 104.69249 * 87.25276 * 20 18 16 22 22 C 1.36930 * 127.86364 * 140.39168 * 21 20 18 23 23 H 1.08001 * 120.00065 * 195.61293 * 22 21 20 24 24 C 1.38810 * 120.00157 * 15.60659 * 22 21 20 25 25 N 1.31618 * 119.99919 * 9.01509 * 24 22 21 26 26 Si 1.86804 * 120.00157 * 189.01159 * 24 22 21 27 27 H 1.48502 * 109.46815 * 94.46406 * 26 24 22 28 28 H 1.48500 * 109.46898 * 214.46187 * 26 24 22 29 29 H 1.48495 * 109.47078 * 334.45861 * 26 24 22 30 30 C 1.48147 * 104.29621 * 320.39748 * 21 20 18 31 31 C 1.53001 * 117.44328 * 115.99969 * 16 15 14 32 32 H 1.08996 * 119.53597 * 355.84081 * 31 16 15 33 33 H 1.09000 * 109.47304 * 300.00173 * 1 2 3 34 34 H 1.09002 * 109.47348 * 59.99875 * 1 2 3 35 35 H 1.09000 * 109.47389 * 180.02562 * 1 2 3 36 36 H 1.09000 * 109.47304 * 239.99827 * 2 1 3 37 37 H 1.09002 * 109.47348 * 120.00125 * 2 1 3 38 38 H 1.07992 * 125.99130 * 179.97438 * 5 4 3 39 39 H 1.08003 * 126.59147 * 180.28831 * 6 5 4 40 40 H 1.09003 * 109.47743 * 300.00638 * 10 8 7 41 41 H 1.09006 * 109.47254 * 60.00254 * 10 8 7 42 42 H 1.09003 * 109.47461 * 180.02562 * 10 8 7 43 43 H 1.09003 * 109.47223 * 65.00303 * 11 8 7 44 44 H 1.08996 * 109.47650 * 304.99899 * 11 8 7 45 45 H 0.96992 * 119.99787 * 0.02562 * 14 12 11 46 46 H 1.09003 * 109.46722 * 60.00269 * 15 14 12 47 47 H 1.08996 * 109.47343 * 300.00360 * 15 14 12 48 48 H 1.09001 * 110.41097 * 205.97636 * 20 18 16 49 49 H 1.09004 * 110.40443 * 328.40505 * 20 18 16 50 50 H 0.97002 * 120.00349 * 179.97438 * 25 24 22 51 51 H 1.09007 * 110.40731 * 280.80290 * 30 21 20 52 52 H 1.09005 * 110.40520 * 158.37703 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2866 2.1376 -1.0604 5 6 2.7158 3.3507 -0.6820 6 6 2.7224 3.3889 0.6642 7 7 2.2947 2.1629 1.0973 8 6 2.1434 1.7374 2.4910 9 1 1.7793 0.7105 2.5199 10 6 1.1423 2.6531 3.1980 11 6 3.4974 1.8191 3.1989 12 6 3.3684 1.2663 4.5949 13 8 2.2989 0.8487 4.9854 14 7 4.4416 1.2371 5.4099 15 6 4.3160 0.7002 6.7672 16 6 5.6697 0.7829 7.4756 17 1 6.5436 0.7174 6.8273 18 6 5.7762 0.1581 8.8680 19 1 4.9234 -0.3795 9.2825 20 6 7.1826 -0.1770 9.4097 21 7 7.6399 1.0686 10.0614 22 6 8.3379 1.1971 11.2324 23 1 8.3926 2.1561 11.7260 24 6 8.9750 0.0947 11.7853 25 7 9.0606 -1.0271 11.1021 26 14 9.7111 0.2032 13.4987 27 1 8.7276 -0.2973 14.4925 28 1 10.9429 -0.6238 13.5615 29 1 10.0479 1.6168 13.8041 30 6 7.1714 2.1466 9.1597 31 6 5.7688 1.6907 8.7032 32 1 4.9105 2.2960 8.9946 33 1 -0.3634 0.5139 0.8900 34 1 -0.3634 0.5139 -0.8900 35 1 -0.3634 -1.0276 0.0005 36 1 1.8933 -0.5139 -0.8900 37 1 1.8933 -0.5139 0.8900 38 1 3.0019 4.1568 -1.3411 39 1 3.0119 4.2253 1.2831 40 1 1.5060 3.6803 3.1691 41 1 0.1777 2.5950 2.6937 42 1 1.0301 2.3368 4.2351 43 1 3.8194 2.8593 3.2483 44 1 4.2332 1.2369 2.6442 45 1 5.2967 1.5721 5.0980 46 1 3.9942 -0.3400 6.7181 47 1 3.5801 1.2825 7.3216 48 1 7.1267 -0.9865 10.1375 49 1 7.8508 -0.4458 8.5916 50 1 9.5061 -1.7974 11.4882 51 1 7.8380 2.2415 8.3024 52 1 7.1071 3.0918 9.6987 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570924019.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:05 Heat of formation + Delta-G solvation = 54.020090 kcal Electronic energy + Delta-G solvation = -29559.430305 eV Core-core repulsion = 25560.644674 eV Total energy + Delta-G solvation = -3998.785631 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 11.89 seconds Orbital eigenvalues (eV) -43.14180 -41.04691 -40.27300 -36.91087 -36.17330 -35.00073 -34.69654 -32.80087 -31.85384 -29.78740 -29.52140 -28.88257 -28.24082 -26.40445 -24.81078 -24.02239 -22.87751 -22.15071 -21.79416 -20.94772 -20.79369 -20.19187 -18.85408 -18.48821 -17.64543 -17.13094 -16.77528 -16.71921 -16.28636 -15.92371 -15.78118 -15.37808 -15.21020 -15.06318 -14.89199 -14.62066 -14.41800 -14.36760 -14.18242 -14.09510 -13.89081 -13.37479 -13.19984 -13.18620 -12.96597 -12.79611 -12.72795 -12.52726 -12.50215 -12.29678 -12.20224 -11.97736 -11.95990 -11.93219 -11.77832 -11.18016 -10.95779 -10.82739 -10.69504 -10.61578 -10.49877 -10.03052 -9.26891 -8.91433 -7.92988 -5.29223 1.11881 1.45818 1.47213 1.56427 1.57188 1.64822 2.20319 2.24961 2.46655 2.74697 3.25321 3.40769 3.50310 3.61691 3.66587 3.71430 3.77509 3.85707 3.93585 4.08752 4.21548 4.25506 4.28328 4.36130 4.42033 4.43039 4.50178 4.51547 4.56665 4.66506 4.68933 4.71300 4.75639 4.81061 4.88233 4.94065 4.99258 5.02589 5.08851 5.15029 5.24519 5.28318 5.34867 5.43536 5.44543 5.48790 5.53485 5.66357 5.88909 6.17946 6.27396 6.51572 7.00933 7.19111 7.20313 7.68043 8.45741 9.20599 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.028048 B = 0.001570 C = 0.001551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.047945 B =17829.151238 C =18050.079778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.042 4.042 3 C 0.196 3.804 4 N -0.530 5.530 5 C -0.056 4.056 6 C -0.048 4.048 7 N -0.446 5.446 8 C 0.149 3.851 9 H 0.106 0.894 10 C -0.159 4.159 11 C -0.142 4.142 12 C 0.520 3.480 13 O -0.572 6.572 14 N -0.713 5.713 15 C 0.164 3.836 16 C -0.108 4.108 17 H 0.109 0.891 18 C -0.178 4.178 19 H 0.112 0.888 20 C 0.188 3.812 21 N -0.621 5.621 22 C -0.241 4.241 23 H 0.081 0.919 24 C -0.063 4.063 25 N -0.947 5.947 26 Si 0.979 3.021 27 H -0.287 1.287 28 H -0.294 1.294 29 H -0.266 1.266 30 C 0.147 3.853 31 C -0.160 4.160 32 H 0.125 0.875 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.181 0.819 39 H 0.201 0.799 40 H 0.071 0.929 41 H 0.057 0.943 42 H 0.084 0.916 43 H 0.126 0.874 44 H 0.114 0.886 45 H 0.416 0.584 46 H 0.069 0.931 47 H 0.070 0.930 48 H 0.051 0.949 49 H 0.001 0.999 50 H 0.250 0.750 51 H 0.028 0.972 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.678 7.256 -21.472 27.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.081 4.081 3 C -0.067 4.067 4 N -0.249 5.249 5 C -0.203 4.203 6 C -0.181 4.181 7 N -0.129 5.129 8 C 0.046 3.954 9 H 0.124 0.876 10 C -0.217 4.217 11 C -0.182 4.182 12 C 0.307 3.693 13 O -0.452 6.452 14 N -0.365 5.365 15 C 0.040 3.960 16 C -0.127 4.127 17 H 0.127 0.873 18 C -0.199 4.199 19 H 0.130 0.870 20 C 0.063 3.937 21 N -0.345 5.345 22 C -0.369 4.369 23 H 0.098 0.902 24 C -0.257 4.257 25 N -0.595 5.595 26 Si 0.807 3.193 27 H -0.214 1.214 28 H -0.221 1.221 29 H -0.191 1.191 30 C 0.022 3.978 31 C -0.179 4.179 32 H 0.142 0.858 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.101 0.899 36 H 0.114 0.886 37 H 0.108 0.892 38 H 0.198 0.802 39 H 0.217 0.783 40 H 0.090 0.910 41 H 0.076 0.924 42 H 0.102 0.898 43 H 0.144 0.856 44 H 0.132 0.868 45 H 0.253 0.747 46 H 0.087 0.913 47 H 0.088 0.912 48 H 0.069 0.931 49 H 0.019 0.981 50 H 0.059 0.941 51 H 0.046 0.954 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.353 6.575 -21.651 27.919 hybrid contribution 1.240 0.233 1.677 2.099 sum -15.113 6.808 -19.974 25.956 Atomic orbital electron populations 1.21695 0.93431 1.03178 1.01646 1.20080 0.96870 0.86513 1.04620 1.23659 1.04076 0.97447 0.81471 1.70206 1.19529 1.05573 1.29626 1.22648 1.07362 0.96238 0.94022 1.23060 1.08104 0.90324 0.96595 1.45658 1.48545 1.11651 1.07030 1.21140 0.95870 1.01325 0.77052 0.87643 1.22199 0.98149 0.99419 1.01936 1.21945 0.98507 1.05726 0.92061 1.20571 0.83407 0.77991 0.87326 1.90707 1.28313 1.48982 1.77210 1.45902 1.13343 1.63454 1.13827 1.20657 0.94312 0.99249 0.81734 1.22428 0.98348 1.02038 0.89861 0.87311 1.23898 0.99529 0.97462 0.98974 0.86962 1.20744 0.88992 0.90029 0.93984 1.45457 1.63837 1.02261 1.22934 1.19391 1.23867 0.96402 0.97289 0.90172 1.25731 1.00504 0.96560 1.02859 1.70088 1.48362 1.03205 1.37844 0.85060 0.77143 0.77801 0.79315 1.21401 1.22066 1.19053 1.21311 0.91952 0.91926 0.92570 1.23896 0.98983 0.93269 1.01764 0.85759 0.93191 0.93089 0.89910 0.88636 0.89214 0.80226 0.78262 0.90973 0.92422 0.89751 0.85609 0.86822 0.74710 0.91278 0.91219 0.93067 0.98075 0.94137 0.95407 0.92596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.89 71.98 0.71 -1.00 16 2 C -0.04 -0.57 6.08 29.85 0.18 -0.38 16 3 C 0.20 3.60 7.16 138.13 0.99 4.58 16 4 N -0.53 -11.94 11.25 -188.14 -2.12 -14.06 16 5 C -0.06 -0.99 11.87 83.52 0.99 0.00 16 6 C -0.05 -0.65 10.70 83.09 0.89 0.24 16 7 N -0.45 -6.52 2.61 -491.92 -1.28 -7.80 16 8 C 0.15 1.85 2.64 44.99 0.12 1.97 16 9 H 0.11 1.46 6.48 -2.39 -0.02 1.45 16 10 C -0.16 -2.05 8.99 71.98 0.65 -1.41 16 11 C -0.14 -1.38 5.19 29.85 0.15 -1.23 16 12 C 0.52 8.27 7.55 87.66 0.66 8.93 16 13 O -0.57 -13.18 13.96 -3.03 -0.04 -13.22 16 14 N -0.71 -10.80 5.56 -463.04 -2.57 -13.37 16 15 C 0.16 3.36 5.95 86.38 0.51 3.88 16 16 C -0.11 -2.72 5.40 -10.79 -0.06 -2.78 16 17 H 0.11 2.70 8.04 -2.38 -0.02 2.68 16 18 C -0.18 -6.19 6.85 -9.94 -0.07 -6.26 16 19 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 20 C 0.19 8.94 5.69 86.59 0.49 9.43 16 21 N -0.62 -31.20 3.37 -688.98 -2.32 -33.53 16 22 C -0.24 -13.29 10.35 84.03 0.87 -12.42 16 23 H 0.08 4.23 7.84 -2.91 -0.02 4.21 16 24 C -0.06 -3.52 5.40 84.86 0.46 -3.07 16 25 N -0.95 -56.26 10.86 21.65 0.24 -56.02 16 26 Si 0.98 44.90 29.56 68.60 2.03 46.93 16 27 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 28 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 29 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 30 C 0.15 5.70 7.03 86.53 0.61 6.31 16 31 C -0.16 -4.87 6.74 -9.94 -0.07 -4.94 16 32 H 0.12 3.33 8.12 -2.39 -0.02 3.31 16 33 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.09 0.97 7.08 -2.39 -0.02 0.95 16 38 H 0.18 2.43 8.06 -2.91 -0.02 2.41 16 39 H 0.20 1.36 8.06 -2.91 -0.02 1.33 16 40 H 0.07 0.74 7.95 -2.39 -0.02 0.72 16 41 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 42 H 0.08 1.39 5.95 -2.39 -0.01 1.38 16 43 H 0.13 0.70 8.09 -2.39 -0.02 0.69 16 44 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.42 4.36 8.40 -92.71 -0.78 3.58 16 46 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.07 1.49 7.93 -2.39 -0.02 1.48 16 48 H 0.05 2.80 6.50 -2.39 -0.02 2.79 16 49 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 50 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 51 H 0.03 1.06 8.14 -2.38 -0.02 1.04 16 52 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 Total: -1.00 -73.46 418.34 2.15 -71.31 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: 0.13 Total: 17.91 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: 8.09 Total: 1.85 kcal Atomic # 7 Polarization: -116.72 SS G_CDS: -8.06 Total: -124.78 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -0.04 Total: -13.22 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -73.46 2.15 -71.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570924019.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.329 kcal (2) G-P(sol) polarization free energy of solvation -73.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.90 seconds