Wall clock time and date at job start Wed Apr 1 2020 04:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47413 * 2 1 4 4 C 1.50703 * 109.47034 * 120.00538 * 2 1 3 5 5 N 1.32161 * 120.53361 * 304.92548 * 4 2 1 6 6 C 1.31853 * 120.96744 * 179.97438 * 5 4 2 7 7 N 1.31888 * 122.09456 * 0.02562 * 6 5 4 8 8 C 1.32132 * 120.96726 * 359.65853 * 7 6 5 9 9 C 1.39922 * 120.53754 * 124.90880 * 4 2 1 10 10 C 1.47833 * 120.94581 * 0.02562 * 9 4 2 11 11 O 1.21557 * 119.99560 * 305.93990 * 10 9 4 12 12 N 1.34770 * 120.00702 * 125.93375 * 10 9 4 13 13 C 1.46937 * 120.60277 * 354.42067 * 12 10 9 14 14 C 1.53184 * 108.77099 * 233.53146 * 13 12 10 15 15 C 1.53037 * 109.34246 * 305.41226 * 14 13 12 16 16 C 1.53046 * 109.53712 * 61.34799 * 15 14 13 17 17 H 1.08995 * 109.49274 * 58.62053 * 16 15 14 18 18 C 1.52996 * 109.49885 * 178.68799 * 16 15 14 19 19 C 1.52999 * 109.47086 * 185.00361 * 18 16 15 20 20 N 1.46500 * 109.47068 * 179.97438 * 19 18 16 21 21 C 1.36937 * 120.00139 * 179.97438 * 20 19 18 22 22 H 1.07999 * 119.99707 * 359.97438 * 21 20 19 23 23 C 1.38810 * 120.00380 * 180.02562 * 21 20 19 24 24 N 1.31621 * 119.99758 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00201 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.47152 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.47135 * 119.99903 * 25 23 21 28 28 H 1.48500 * 109.47164 * 239.99574 * 25 23 21 29 29 C 1.46926 * 120.63552 * 174.39334 * 12 10 9 30 30 H 1.09001 * 109.46755 * 299.99954 * 1 2 3 31 31 H 1.09002 * 109.47190 * 59.99711 * 1 2 3 32 32 H 1.08998 * 109.47749 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46755 * 240.00046 * 2 1 3 34 34 H 1.08996 * 109.46835 * 300.00026 * 3 2 1 35 35 H 1.09001 * 109.47123 * 60.00271 * 3 2 1 36 36 H 1.09004 * 109.47268 * 180.02562 * 3 2 1 37 37 H 1.07999 * 118.95403 * 180.02562 * 6 5 4 38 38 H 1.07996 * 120.54558 * 180.30870 * 8 7 6 39 39 H 1.08995 * 109.56211 * 113.75650 * 13 12 10 40 40 H 1.08998 * 109.61646 * 353.33306 * 13 12 10 41 41 H 1.09009 * 109.49960 * 185.44114 * 14 13 12 42 42 H 1.09000 * 109.49888 * 65.38229 * 14 13 12 43 43 H 1.09002 * 109.46277 * 181.37084 * 15 14 13 44 44 H 1.08996 * 109.46126 * 301.33253 * 15 14 13 45 45 H 1.09008 * 109.46960 * 304.99809 * 18 16 15 46 46 H 1.09001 * 109.47430 * 64.99853 * 18 16 15 47 47 H 1.09000 * 109.46948 * 299.99303 * 19 18 16 48 48 H 1.09001 * 109.47419 * 60.00031 * 19 18 16 49 49 H 0.97004 * 120.00060 * 359.97438 * 20 19 18 50 50 H 0.97004 * 119.99954 * 180.02562 * 24 23 21 51 51 H 1.09001 * 109.58365 * 6.65201 * 29 12 10 52 52 H 1.08993 * 109.59048 * 246.22685 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.6417 -0.3275 2.4335 6 6 2.0754 -0.9433 3.5157 7 7 2.9120 -1.9611 3.4550 8 6 3.3488 -2.4138 2.2931 9 6 2.9195 -1.7866 1.1176 10 6 3.3856 -2.2521 -0.2059 11 8 2.5781 -2.5449 -1.0661 12 7 4.7056 -2.3517 -0.4589 13 6 5.6930 -1.8870 0.5250 14 6 6.6492 -0.9067 -0.1614 15 6 7.2580 -1.5737 -1.3969 16 6 6.1457 -1.9348 -2.3841 17 1 5.6019 -1.0329 -2.6651 18 6 6.7582 -2.5718 -3.6330 19 6 5.6609 -2.8183 -4.6703 20 7 6.2475 -3.4277 -5.8664 21 6 5.4516 -3.7412 -6.9357 22 1 4.3913 -3.5396 -6.8970 23 6 6.0073 -4.3191 -8.0688 24 7 7.2993 -4.5662 -8.1153 25 14 4.9214 -4.7475 -9.5271 26 1 3.5166 -4.3727 -9.2252 27 1 5.3852 -4.0028 -10.7253 28 1 4.9994 -6.2068 -9.7905 29 6 5.1842 -2.9274 -1.7231 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.6768 1.9562 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 3.1301 1.4424 -0.0005 37 1 1.7347 -0.6035 4.4826 38 1 4.0299 -3.2508 2.2511 39 1 6.2553 -2.7385 0.9079 40 1 5.1824 -1.3846 1.3466 41 1 7.4440 -0.6286 0.5308 42 1 6.1007 -0.0143 -0.4629 43 1 7.9573 -0.8864 -1.8732 44 1 7.7860 -2.4791 -1.0977 45 1 7.5096 -1.9019 -4.0513 46 1 7.2251 -3.5198 -3.3657 47 1 4.9096 -3.4881 -4.2521 48 1 5.1941 -1.8703 -4.9377 49 1 7.1998 -3.6091 -5.9010 50 1 7.6877 -4.9697 -8.9073 51 1 4.3376 -3.1115 -2.3844 52 1 5.7055 -3.8637 -1.5241 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666173020.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:07 Heat of formation + Delta-G solvation = 6.050752 kcal Electronic energy + Delta-G solvation = -31098.950007 eV Core-core repulsion = 27098.084270 eV Total energy + Delta-G solvation = -4000.865738 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.87650 -40.12417 -37.99527 -36.41813 -35.41686 -33.87421 -33.25598 -32.27867 -31.98271 -30.62279 -27.61490 -27.42352 -26.47576 -25.36172 -24.67014 -24.14745 -22.64926 -21.21368 -21.09246 -20.49495 -19.61360 -18.38230 -17.62320 -17.09268 -16.97390 -16.51069 -15.47078 -15.27447 -15.15124 -14.77122 -14.63229 -14.52224 -14.40901 -13.99065 -13.86169 -13.65972 -13.49585 -13.42640 -13.20963 -13.08713 -12.79873 -12.45368 -12.27790 -12.04427 -11.87124 -11.63710 -11.52324 -11.27009 -11.20376 -11.11223 -11.09129 -10.90617 -10.84702 -10.62163 -10.47744 -10.25520 -10.16390 -9.93148 -9.82410 -9.68950 -9.63635 -8.86886 -8.83484 -6.88208 -5.73608 -3.01787 0.15094 0.56245 2.28134 2.63684 3.25533 3.45909 3.51824 3.53168 3.54220 3.64537 3.85103 4.01159 4.41121 4.44446 4.61826 4.63656 4.67901 4.73842 4.78460 4.82471 4.87415 5.01226 5.03127 5.12685 5.30317 5.33572 5.40869 5.49938 5.54377 5.54546 5.57808 5.59844 5.62941 5.70530 5.73147 5.82291 5.83573 5.91966 5.94928 5.98613 6.04584 6.15443 6.17556 6.29357 6.41731 6.43484 6.44658 6.88431 6.91612 7.06404 7.56602 7.74872 7.80834 8.45839 9.56853 10.15239 10.49740 11.49567 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014139 B = 0.002430 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.821693 B =11521.153873 C =12545.005909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.062 4.062 3 C -0.139 4.139 4 C 0.233 3.767 5 N -0.513 5.513 6 C 0.309 3.691 7 N -0.524 5.524 8 C 0.183 3.817 9 C -0.231 4.231 10 C 0.568 3.432 11 O -0.517 6.517 12 N -0.601 5.601 13 C 0.104 3.896 14 C -0.133 4.133 15 C -0.115 4.115 16 C -0.095 4.095 17 H 0.075 0.925 18 C -0.119 4.119 19 C 0.151 3.849 20 N -0.734 5.734 21 C -0.236 4.236 22 H 0.071 0.929 23 C -0.016 4.016 24 N -0.935 5.935 25 Si 0.906 3.094 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.292 1.292 29 C 0.114 3.886 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.105 0.895 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.052 0.948 37 H 0.201 0.799 38 H 0.173 0.827 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.064 0.936 47 H 0.020 0.980 48 H 0.017 0.983 49 H 0.383 0.617 50 H 0.254 0.746 51 H 0.103 0.897 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.497 10.796 27.135 29.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.081 4.081 3 C -0.197 4.197 4 C 0.086 3.914 5 N -0.226 5.226 6 C 0.022 3.978 7 N -0.237 5.237 8 C 0.016 3.984 9 C -0.238 4.238 10 C 0.354 3.646 11 O -0.393 6.393 12 N -0.334 5.334 13 C -0.019 4.019 14 C -0.172 4.172 15 C -0.153 4.153 16 C -0.115 4.115 17 H 0.093 0.907 18 C -0.157 4.157 19 C 0.023 3.977 20 N -0.378 5.378 21 C -0.367 4.367 22 H 0.089 0.911 23 C -0.212 4.212 24 N -0.584 5.584 25 Si 0.737 3.263 26 H -0.205 1.205 27 H -0.219 1.219 28 H -0.219 1.219 29 C -0.007 4.007 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.123 0.877 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.217 0.783 38 H 0.190 0.810 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.083 0.917 47 H 0.038 0.962 48 H 0.035 0.965 49 H 0.216 0.784 50 H 0.064 0.936 51 H 0.121 0.879 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.405 10.931 27.475 30.255 hybrid contribution 0.213 -0.710 -1.475 1.651 sum -6.192 10.222 26.000 28.615 Atomic orbital electron populations 1.21709 0.92543 1.02381 1.02655 1.20459 0.97835 0.96556 0.93293 1.21785 1.00800 0.94131 1.02985 1.21841 0.86814 0.88750 0.93972 1.68289 1.25248 1.30586 0.98527 1.25203 0.88076 0.86838 0.97683 1.68468 1.12958 1.14017 1.28270 1.23450 0.92977 0.95822 0.86187 1.21649 1.03889 1.01822 0.96456 1.17835 0.82486 0.78034 0.86237 1.90849 1.53302 1.48990 1.46141 1.48097 1.04717 1.61125 1.19433 1.21862 0.90763 0.98270 0.91051 1.21907 0.98697 0.98443 0.98103 1.21603 0.97752 1.00914 0.95043 1.21460 0.95912 0.98970 0.95165 0.90686 1.21734 0.99165 1.00729 0.94065 1.20709 0.93927 0.95743 0.87287 1.42381 1.08376 1.73832 1.13239 1.19301 0.91568 1.32805 0.93049 0.91135 1.24740 0.95945 1.02042 0.98469 1.69673 1.09925 1.49588 1.29244 0.86117 0.79565 0.77733 0.82843 1.20506 1.21895 1.21871 1.21932 0.99373 0.95646 0.83795 0.91611 0.91559 0.92555 0.87708 0.91308 0.91611 0.92908 0.78264 0.81021 0.90689 0.90597 0.90607 0.91493 0.91231 0.91503 0.91461 0.91712 0.96195 0.96514 0.78367 0.93630 0.87889 0.90846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.06 37.16 0.34 -0.93 16 2 C -0.06 -0.64 3.00 -91.77 -0.28 -0.91 16 3 C -0.14 -1.18 9.15 37.16 0.34 -0.84 16 4 C 0.23 2.43 5.52 -81.82 -0.45 1.98 16 5 N -0.51 -4.90 10.00 -10.48 -0.10 -5.00 16 6 C 0.31 2.47 12.27 -92.02 -1.13 1.34 16 7 N -0.52 -4.61 10.42 -14.24 -0.15 -4.76 16 8 C 0.18 1.58 9.13 -16.77 -0.15 1.43 16 9 C -0.23 -2.39 4.60 -104.69 -0.48 -2.87 16 10 C 0.57 6.97 6.42 -12.34 -0.08 6.89 16 11 O -0.52 -8.25 14.85 5.32 0.08 -8.17 16 12 N -0.60 -6.34 2.97 -173.89 -0.52 -6.86 16 13 C 0.10 0.78 5.66 -3.71 -0.02 0.76 16 14 C -0.13 -1.00 6.08 -26.62 -0.16 -1.16 16 15 C -0.12 -1.06 5.17 -26.69 -0.14 -1.20 16 16 C -0.10 -1.14 2.34 -90.50 -0.21 -1.35 16 17 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 18 C -0.12 -1.81 4.80 -26.73 -0.13 -1.94 16 19 C 0.15 3.05 6.02 -4.04 -0.02 3.03 16 20 N -0.73 -18.99 5.60 -59.91 -0.34 -19.32 16 21 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 22 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 23 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 24 N -0.94 -28.70 13.06 55.49 0.72 -27.97 16 25 Si 0.91 22.88 29.55 -169.99 -5.02 17.86 16 26 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 28 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 29 C 0.11 1.39 5.34 -3.71 -0.02 1.37 16 30 H 0.06 0.58 7.99 -51.93 -0.41 0.16 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.10 1.28 5.53 -51.93 -0.29 1.00 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.20 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.17 1.11 7.84 -52.49 -0.41 0.70 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.53 5.40 -51.93 -0.28 0.25 16 41 H 0.08 0.44 8.14 -51.92 -0.42 0.02 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 46 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.02 0.42 6.70 -51.93 -0.35 0.07 16 48 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.38 10.30 7.67 -40.82 -0.31 9.98 16 50 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 51 H 0.10 1.55 5.72 -51.93 -0.30 1.25 16 52 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 410.97 15.07 6.19 6.19 Total: -1.00 -33.91 410.97 -10.64 -44.55 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -8.66 Total: 5.41 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -2.84 Total: -1.92 kcal Atomic # 7 Polarization: -63.53 SS G_CDS: -0.38 Total: -63.91 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: 0.08 Total: -8.17 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.91 -10.64 -44.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666173020.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.603 kcal (2) G-P(sol) polarization free energy of solvation -33.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds