Wall clock time and date at job start Wed Apr 1 2020 04:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47413 * 2 1 4 4 C 1.50703 * 109.47034 * 120.00538 * 2 1 3 5 5 N 1.32161 * 120.53361 * 304.92548 * 4 2 1 6 6 C 1.31853 * 120.96744 * 179.97438 * 5 4 2 7 7 N 1.31888 * 122.09456 * 0.02562 * 6 5 4 8 8 C 1.32132 * 120.96726 * 359.65853 * 7 6 5 9 9 C 1.39922 * 120.53754 * 124.90880 * 4 2 1 10 10 C 1.47833 * 120.94581 * 0.02562 * 9 4 2 11 11 O 1.21557 * 119.99560 * 305.93990 * 10 9 4 12 12 N 1.34770 * 120.00702 * 125.93375 * 10 9 4 13 13 C 1.46937 * 120.60277 * 354.42067 * 12 10 9 14 14 C 1.53184 * 108.77099 * 233.53146 * 13 12 10 15 15 C 1.53037 * 109.34246 * 305.41226 * 14 13 12 16 16 C 1.53046 * 109.53712 * 61.34799 * 15 14 13 17 17 H 1.08995 * 109.49274 * 58.62053 * 16 15 14 18 18 C 1.52996 * 109.49885 * 178.68799 * 16 15 14 19 19 C 1.52999 * 109.47086 * 185.00361 * 18 16 15 20 20 N 1.46500 * 109.47068 * 179.97438 * 19 18 16 21 21 C 1.36937 * 120.00139 * 179.97438 * 20 19 18 22 22 H 1.07999 * 119.99707 * 359.97438 * 21 20 19 23 23 C 1.38810 * 120.00380 * 180.02562 * 21 20 19 24 24 N 1.31621 * 119.99758 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00201 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.47152 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.47135 * 119.99903 * 25 23 21 28 28 H 1.48500 * 109.47164 * 239.99574 * 25 23 21 29 29 C 1.46926 * 120.63552 * 174.39334 * 12 10 9 30 30 H 1.09001 * 109.46755 * 299.99954 * 1 2 3 31 31 H 1.09002 * 109.47190 * 59.99711 * 1 2 3 32 32 H 1.08998 * 109.47749 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46755 * 240.00046 * 2 1 3 34 34 H 1.08996 * 109.46835 * 300.00026 * 3 2 1 35 35 H 1.09001 * 109.47123 * 60.00271 * 3 2 1 36 36 H 1.09004 * 109.47268 * 180.02562 * 3 2 1 37 37 H 1.07999 * 118.95403 * 180.02562 * 6 5 4 38 38 H 1.07996 * 120.54558 * 180.30870 * 8 7 6 39 39 H 1.08995 * 109.56211 * 113.75650 * 13 12 10 40 40 H 1.08998 * 109.61646 * 353.33306 * 13 12 10 41 41 H 1.09009 * 109.49960 * 185.44114 * 14 13 12 42 42 H 1.09000 * 109.49888 * 65.38229 * 14 13 12 43 43 H 1.09002 * 109.46277 * 181.37084 * 15 14 13 44 44 H 1.08996 * 109.46126 * 301.33253 * 15 14 13 45 45 H 1.09008 * 109.46960 * 304.99809 * 18 16 15 46 46 H 1.09001 * 109.47430 * 64.99853 * 18 16 15 47 47 H 1.09000 * 109.46948 * 299.99303 * 19 18 16 48 48 H 1.09001 * 109.47419 * 60.00031 * 19 18 16 49 49 H 0.97004 * 120.00060 * 359.97438 * 20 19 18 50 50 H 0.97004 * 119.99954 * 180.02562 * 24 23 21 51 51 H 1.09001 * 109.58365 * 6.65201 * 29 12 10 52 52 H 1.08993 * 109.59048 * 246.22685 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.6417 -0.3275 2.4335 6 6 2.0754 -0.9433 3.5157 7 7 2.9120 -1.9611 3.4550 8 6 3.3488 -2.4138 2.2931 9 6 2.9195 -1.7866 1.1176 10 6 3.3856 -2.2521 -0.2059 11 8 2.5781 -2.5449 -1.0661 12 7 4.7056 -2.3517 -0.4589 13 6 5.6930 -1.8870 0.5250 14 6 6.6492 -0.9067 -0.1614 15 6 7.2580 -1.5737 -1.3969 16 6 6.1457 -1.9348 -2.3841 17 1 5.6019 -1.0329 -2.6651 18 6 6.7582 -2.5718 -3.6330 19 6 5.6609 -2.8183 -4.6703 20 7 6.2475 -3.4277 -5.8664 21 6 5.4516 -3.7412 -6.9357 22 1 4.3913 -3.5396 -6.8970 23 6 6.0073 -4.3191 -8.0688 24 7 7.2993 -4.5662 -8.1153 25 14 4.9214 -4.7475 -9.5271 26 1 3.5166 -4.3727 -9.2252 27 1 5.3852 -4.0028 -10.7253 28 1 4.9994 -6.2068 -9.7905 29 6 5.1842 -2.9274 -1.7231 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.6768 1.9562 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 3.1301 1.4424 -0.0005 37 1 1.7347 -0.6035 4.4826 38 1 4.0299 -3.2508 2.2511 39 1 6.2553 -2.7385 0.9079 40 1 5.1824 -1.3846 1.3466 41 1 7.4440 -0.6286 0.5308 42 1 6.1007 -0.0143 -0.4629 43 1 7.9573 -0.8864 -1.8732 44 1 7.7860 -2.4791 -1.0977 45 1 7.5096 -1.9019 -4.0513 46 1 7.2251 -3.5198 -3.3657 47 1 4.9096 -3.4881 -4.2521 48 1 5.1941 -1.8703 -4.9377 49 1 7.1998 -3.6091 -5.9010 50 1 7.6877 -4.9697 -8.9073 51 1 4.3376 -3.1115 -2.3844 52 1 5.7055 -3.8637 -1.5241 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666173020.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:05 Heat of formation + Delta-G solvation = -14.259992 kcal Electronic energy + Delta-G solvation = -31099.830747 eV Core-core repulsion = 27098.084270 eV Total energy + Delta-G solvation = -4001.746478 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.61759 -40.98830 -38.98574 -37.23512 -36.90883 -35.19468 -34.13482 -33.47116 -32.76126 -32.22452 -29.07648 -28.15103 -27.31424 -26.12727 -25.88032 -25.31977 -24.04962 -22.28392 -21.95789 -21.63520 -20.46115 -19.21007 -19.06233 -18.38597 -17.77311 -17.44055 -16.74266 -16.32229 -16.16743 -15.88779 -15.56295 -15.45137 -15.32535 -15.24270 -15.10814 -14.82684 -14.61459 -14.32831 -14.27778 -14.14380 -13.93132 -13.47614 -13.14086 -13.01715 -12.86763 -12.81879 -12.59671 -12.58657 -12.38623 -12.33432 -12.10832 -12.06148 -11.96552 -11.92585 -11.72357 -11.65329 -11.53088 -11.21574 -11.04397 -10.94562 -10.62507 -10.38833 -9.75025 -9.02584 -7.98444 -5.27311 -0.55348 -0.14432 1.37945 1.45049 1.45782 1.56426 1.78139 2.53602 2.56508 2.83970 3.04259 3.16282 3.25234 3.34921 3.60906 3.71508 3.82241 3.85925 3.98729 4.01859 4.02478 4.07263 4.12088 4.31059 4.37497 4.40806 4.45175 4.51183 4.56169 4.65453 4.71096 4.71402 4.80511 4.82560 4.83764 4.85046 4.90328 5.01340 5.03237 5.08727 5.14806 5.21107 5.22452 5.31096 5.31580 5.36797 5.42927 5.46860 5.50879 5.73870 6.20635 6.25046 6.89084 6.90574 7.30880 8.06465 8.30888 9.25225 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014139 B = 0.002430 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.821693 B =11521.153873 C =12545.005909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.065 4.065 3 C -0.132 4.132 4 C 0.225 3.775 5 N -0.522 5.522 6 C 0.312 3.688 7 N -0.529 5.529 8 C 0.193 3.807 9 C -0.245 4.245 10 C 0.568 3.432 11 O -0.566 6.566 12 N -0.595 5.595 13 C 0.100 3.900 14 C -0.128 4.128 15 C -0.110 4.110 16 C -0.084 4.084 17 H 0.062 0.938 18 C -0.104 4.104 19 C 0.150 3.850 20 N -0.746 5.746 21 C -0.248 4.248 22 H 0.069 0.931 23 C -0.074 4.074 24 N -0.968 5.968 25 Si 0.973 3.027 26 H -0.270 1.270 27 H -0.289 1.289 28 H -0.290 1.290 29 C 0.117 3.883 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.040 0.960 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.050 0.950 37 H 0.235 0.765 38 H 0.195 0.805 39 H 0.100 0.900 40 H 0.086 0.914 41 H 0.104 0.896 42 H 0.057 0.943 43 H 0.073 0.927 44 H 0.079 0.921 45 H 0.067 0.933 46 H 0.068 0.932 47 H 0.016 0.984 48 H 0.008 0.992 49 H 0.375 0.625 50 H 0.253 0.747 51 H 0.067 0.933 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.054 11.469 29.630 32.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.084 4.084 3 C -0.190 4.190 4 C 0.079 3.921 5 N -0.235 5.235 6 C 0.026 3.974 7 N -0.242 5.242 8 C 0.025 3.975 9 C -0.252 4.252 10 C 0.355 3.645 11 O -0.446 6.446 12 N -0.326 5.326 13 C -0.022 4.022 14 C -0.166 4.166 15 C -0.148 4.148 16 C -0.104 4.104 17 H 0.080 0.920 18 C -0.142 4.142 19 C 0.024 3.976 20 N -0.389 5.389 21 C -0.380 4.380 22 H 0.087 0.913 23 C -0.266 4.266 24 N -0.618 5.618 25 Si 0.802 3.198 26 H -0.194 1.194 27 H -0.216 1.216 28 H -0.217 1.217 29 C -0.006 4.006 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.059 0.941 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.069 0.931 37 H 0.251 0.749 38 H 0.211 0.789 39 H 0.118 0.882 40 H 0.104 0.896 41 H 0.122 0.878 42 H 0.076 0.924 43 H 0.092 0.908 44 H 0.097 0.903 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.034 0.966 48 H 0.026 0.974 49 H 0.207 0.793 50 H 0.062 0.938 51 H 0.086 0.914 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.958 11.636 30.022 32.745 hybrid contribution 0.049 -0.898 -2.178 2.356 sum -5.909 10.738 27.845 30.423 Atomic orbital electron populations 1.21669 0.92138 1.01562 1.03411 1.20416 0.98199 0.97301 0.92528 1.21732 1.00627 0.93042 1.03567 1.21874 0.86878 0.88959 0.94400 1.68346 1.25638 1.31109 0.98446 1.25940 0.86964 0.85992 0.98482 1.68587 1.13357 1.14347 1.27938 1.23776 0.92547 0.95687 0.85444 1.21497 1.05097 1.02719 0.95914 1.18142 0.82555 0.77279 0.86519 1.90821 1.54648 1.51261 1.47833 1.48133 1.04899 1.60323 1.19258 1.22143 0.90223 0.99350 0.90440 1.21890 0.99218 0.97729 0.97723 1.21570 0.96559 1.01779 0.94893 1.21328 0.96714 0.97873 0.94506 0.91983 1.21591 0.97431 1.01257 0.93969 1.20854 0.95448 0.94522 0.86802 1.42591 1.07928 1.74112 1.14293 1.19640 0.91890 1.32347 0.94116 0.91288 1.25565 0.97346 1.02511 1.01228 1.69813 1.11473 1.50614 1.29927 0.85083 0.78271 0.77232 0.79255 1.19447 1.21621 1.21660 1.21743 0.98111 0.96394 0.84304 0.90792 0.90791 0.94111 0.90338 0.90723 0.90946 0.93068 0.74890 0.78853 0.88213 0.89605 0.87758 0.92425 0.90836 0.90254 0.91471 0.91284 0.96650 0.97353 0.79253 0.93841 0.91417 0.89732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 9.06 71.98 0.65 -1.83 16 2 C -0.07 -1.36 3.00 -11.54 -0.03 -1.39 16 3 C -0.13 -2.18 9.15 71.98 0.66 -1.52 16 4 C 0.23 4.59 5.52 42.92 0.24 4.83 16 5 N -0.52 -9.14 10.00 -187.06 -1.87 -11.01 16 6 C 0.31 4.21 12.27 180.84 2.22 6.43 16 7 N -0.53 -7.94 10.42 -198.97 -2.07 -10.01 16 8 C 0.19 2.94 9.13 85.07 0.78 3.71 16 9 C -0.24 -4.91 4.60 -19.91 -0.09 -5.01 16 10 C 0.57 14.18 6.42 86.78 0.56 14.73 16 11 O -0.57 -19.28 14.85 -3.90 -0.06 -19.34 16 12 N -0.59 -12.17 2.97 -822.34 -2.44 -14.61 16 13 C 0.10 1.23 5.66 86.36 0.49 1.72 16 14 C -0.13 -1.54 6.08 30.67 0.19 -1.36 16 15 C -0.11 -1.77 5.17 30.62 0.16 -1.61 16 16 C -0.08 -1.99 2.34 -10.72 -0.03 -2.01 16 17 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 18 C -0.10 -3.18 4.80 30.59 0.15 -3.04 16 19 C 0.15 6.27 6.02 86.38 0.52 6.79 16 20 N -0.75 -39.56 5.60 -343.45 -1.92 -41.48 16 21 C -0.25 -14.53 9.99 84.03 0.84 -13.69 16 22 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 23 C -0.07 -4.39 5.50 84.86 0.47 -3.93 16 24 N -0.97 -60.19 13.06 21.65 0.28 -59.90 16 25 Si 0.97 47.50 29.55 68.60 2.03 49.53 16 26 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 27 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 28 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 29 C 0.12 2.87 5.34 86.36 0.46 3.34 16 30 H 0.07 1.26 7.99 -2.39 -0.02 1.25 16 31 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.08 2.07 5.53 -2.39 -0.01 2.06 16 34 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.24 1.29 8.06 -2.91 -0.02 1.26 16 38 H 0.19 1.96 7.84 -2.91 -0.02 1.94 16 39 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.09 0.95 5.40 -2.39 -0.01 0.93 16 41 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 42 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.07 2.06 8.14 -2.38 -0.02 2.05 16 46 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 47 H 0.02 0.67 6.70 -2.39 -0.02 0.65 16 48 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 49 H 0.38 20.68 7.67 -92.71 -0.71 19.97 16 50 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 51 H 0.07 2.17 5.72 -2.39 -0.01 2.16 16 52 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -75.28 410.97 2.36 -72.92 By element: Atomic # 1 Polarization: 27.55 SS G_CDS: 0.20 Total: 27.75 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: 8.22 Total: 6.17 kcal Atomic # 7 Polarization: -129.00 SS G_CDS: -8.03 Total: -137.03 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -0.06 Total: -19.34 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.53 kcal Total: -75.28 2.36 -72.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666173020.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.657 kcal (2) G-P(sol) polarization free energy of solvation -75.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds