Wall clock time and date at job start Wed Apr 1 2020 06:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46474 * 2 1 4 4 C 1.52998 * 109.46882 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47439 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47164 * 179.97438 * 5 4 3 7 7 C 1.35363 * 126.38318 * 85.00432 * 6 5 4 8 8 C 1.41503 * 105.50247 * 179.97438 * 7 6 5 9 9 C 1.47718 * 126.51711 * 179.97438 * 8 7 6 10 10 O 1.21575 * 119.99621 * 6.31088 * 9 8 7 11 11 N 1.34773 * 119.99705 * 186.31006 * 9 8 7 12 12 C 1.47159 * 120.71091 * 6.55747 * 11 9 8 13 13 C 1.55893 * 107.94983 * 132.45322 * 12 11 9 14 14 H 1.09002 * 112.45429 * 181.84690 * 13 12 11 15 15 C 1.54547 * 108.44171 * 307.13071 * 13 12 11 16 16 C 1.53728 * 104.95646 * 88.29104 * 15 13 12 17 17 C 1.54554 * 104.94973 * 359.97438 * 16 15 13 18 18 H 1.08999 * 112.17566 * 146.29045 * 17 16 15 19 19 C 1.47161 * 120.70927 * 186.57707 * 11 9 8 20 20 N 1.48301 * 104.35582 * 24.58009 * 17 16 15 21 21 C 1.36937 * 128.07623 * 139.08130 * 20 17 16 22 22 H 1.08006 * 119.99870 * 344.37272 * 21 20 17 23 23 C 1.38809 * 120.00281 * 164.36526 * 21 20 17 24 24 N 1.31618 * 120.00172 * 351.41325 * 23 21 20 25 25 Si 1.86806 * 120.00281 * 171.40572 * 23 21 20 26 26 H 1.48502 * 109.47114 * 270.00604 * 25 23 21 27 27 H 1.48503 * 109.46629 * 30.00377 * 25 23 21 28 28 H 1.48497 * 109.47189 * 150.00240 * 25 23 21 29 29 N 1.31807 * 106.96572 * 0.24092 * 8 7 6 30 30 N 1.28469 * 110.07025 * 359.59110 * 29 8 7 31 31 H 0.97003 * 124.88752 * 180.12640 * 30 29 8 32 32 H 1.09006 * 109.46718 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47373 * 299.99814 * 1 2 3 34 34 H 1.08998 * 109.47277 * 60.00825 * 1 2 3 35 35 H 1.08998 * 109.47373 * 240.00186 * 2 1 3 36 36 H 1.08997 * 109.46779 * 119.99348 * 2 1 3 37 37 H 1.08998 * 109.47168 * 60.00061 * 3 2 1 38 38 H 1.08997 * 109.47085 * 299.99160 * 3 2 1 39 39 H 1.09002 * 109.47057 * 59.99735 * 4 3 2 40 40 H 1.08998 * 109.47564 * 300.00207 * 4 3 2 41 41 H 1.09002 * 109.46933 * 60.00001 * 5 4 3 42 42 H 1.09004 * 109.47353 * 300.00095 * 5 4 3 43 43 H 1.08009 * 127.24878 * 359.97438 * 7 6 5 44 44 H 1.08998 * 109.75163 * 252.40609 * 12 11 9 45 45 H 1.08999 * 109.75560 * 13.09490 * 12 11 9 46 46 H 1.09004 * 110.36299 * 207.00957 * 15 13 12 47 47 H 1.09003 * 110.36488 * 329.20878 * 15 13 12 48 48 H 1.08996 * 110.42030 * 241.06950 * 16 15 13 49 49 H 1.08998 * 110.20960 * 118.81865 * 16 15 13 50 50 H 1.08999 * 109.75044 * 107.58848 * 19 11 9 51 51 H 1.09007 * 109.78842 * 346.87891 * 19 11 9 52 52 H 0.96999 * 120.00631 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5698 1.4427 0.0006 5 6 4.0798 2.8852 0.0000 6 6 5.5868 2.8852 0.0013 7 6 6.3907 2.7895 -1.0836 8 6 7.7124 2.8345 -0.5801 9 6 8.9575 2.7643 -1.3719 10 8 8.9066 2.7726 -2.5866 11 7 10.1497 2.6911 -0.7477 12 6 10.2245 2.5357 0.7137 13 6 11.2424 1.3964 1.0242 14 1 11.3311 1.1969 2.0921 15 6 10.8356 0.1437 0.2157 16 6 11.5476 0.2967 -1.1381 17 6 12.3234 1.6293 -1.0322 18 1 13.2641 1.6025 -1.5822 19 6 11.4045 2.7655 -1.5130 20 7 12.5306 1.8194 0.4239 21 6 13.6520 2.2737 1.0651 22 1 14.5973 2.3039 0.5436 23 6 13.5738 2.6957 2.3852 24 7 12.4002 2.8201 2.9679 25 14 15.1342 3.0869 3.3348 26 1 15.6199 1.8599 4.0159 27 1 16.1752 3.5769 2.3959 28 1 14.8479 4.1348 4.3473 29 7 7.6213 2.9450 0.7301 30 7 6.3870 2.9813 1.0847 31 1 6.0747 3.0616 1.9996 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3634 0.5137 -0.8900 35 1 1.8934 -0.5138 -0.8900 36 1 1.8933 -0.5137 0.8900 37 1 1.6765 1.9564 0.8900 38 1 1.6766 1.9563 -0.8900 39 1 3.9336 0.9287 -0.8891 40 1 3.9329 0.9290 0.8908 41 1 3.7161 3.3995 0.8895 42 1 3.7168 3.3985 -0.8905 43 1 6.0872 2.6981 -2.1161 44 1 10.5586 3.4690 1.1668 45 1 9.2441 2.2660 1.1063 46 1 11.1763 -0.7605 0.7202 47 1 9.7547 0.1157 0.0778 48 1 10.8193 0.3456 -1.9475 49 1 12.2372 -0.5324 -1.2967 50 1 11.8860 3.7276 -1.3383 51 1 11.1959 2.6456 -2.5762 52 1 12.3456 3.1146 3.8905 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691834196.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:34:53 Heat of formation + Delta-G solvation = 61.502207 kcal Electronic energy + Delta-G solvation = -31267.634841 eV Core-core repulsion = 27269.173658 eV Total energy + Delta-G solvation = -3998.461182 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -42.57565 -39.65018 -37.53516 -36.71648 -33.81516 -33.36479 -32.43180 -31.66449 -30.44454 -29.89507 -29.17705 -26.57592 -26.25906 -24.29483 -23.60479 -22.77976 -22.53219 -21.34984 -20.93466 -19.58109 -19.40197 -18.45358 -17.59490 -16.83962 -16.10890 -15.78722 -15.61026 -15.23979 -14.99570 -14.52501 -14.42458 -14.21851 -13.78095 -13.66700 -13.55148 -13.30331 -13.08401 -12.86986 -12.79425 -12.58725 -12.35496 -12.11374 -11.72727 -11.61490 -11.54031 -11.36554 -11.26901 -11.14523 -11.06837 -10.89094 -10.85056 -10.72942 -10.41092 -10.21875 -9.93947 -9.72877 -9.54596 -9.49709 -9.40902 -9.18218 -8.87442 -8.62274 -7.92079 -6.73964 -5.79189 -3.13979 1.85259 2.22798 2.93916 3.37870 3.43952 3.44910 3.70842 3.87927 4.30818 4.45915 4.51110 4.58827 4.69334 4.78953 4.84374 5.06243 5.10456 5.27475 5.28864 5.38007 5.39651 5.43290 5.49899 5.54398 5.61175 5.70506 5.74127 5.78036 5.82278 5.85549 5.87987 5.89534 6.02292 6.04116 6.05617 6.20946 6.30736 6.44330 6.49006 6.51897 6.64183 6.74169 6.80336 6.88170 6.97997 7.04285 7.31295 7.41289 7.54975 7.73217 8.01925 8.19543 8.25512 8.78894 9.11194 9.72946 10.51368 11.33664 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016410 B = 0.002438 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.866905 B =11482.970574 C =12080.322852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.120 4.120 4 C -0.117 4.117 5 C -0.048 4.048 6 C 0.010 3.990 7 C -0.179 4.179 8 C 0.001 3.999 9 C 0.589 3.411 10 O -0.560 6.560 11 N -0.576 5.576 12 C 0.093 3.907 13 C 0.168 3.832 14 H 0.118 0.882 15 C -0.134 4.134 16 C -0.123 4.123 17 C 0.134 3.866 18 H 0.077 0.923 19 C 0.102 3.898 20 N -0.587 5.587 21 C -0.223 4.223 22 H 0.076 0.924 23 C -0.005 4.005 24 N -0.913 5.913 25 Si 0.911 3.089 26 H -0.290 1.290 27 H -0.281 1.281 28 H -0.292 1.292 29 N -0.241 5.241 30 N -0.387 5.387 31 H 0.441 0.559 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.089 0.911 43 H 0.158 0.842 44 H 0.079 0.921 45 H 0.096 0.904 46 H 0.052 0.948 47 H 0.048 0.952 48 H 0.056 0.944 49 H 0.053 0.947 50 H 0.063 0.937 51 H 0.075 0.925 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.791 -2.936 -3.695 21.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.157 4.157 4 C -0.155 4.155 5 C -0.087 4.087 6 C -0.116 4.116 7 C -0.207 4.207 8 C -0.160 4.160 9 C 0.374 3.626 10 O -0.439 6.439 11 N -0.306 5.306 12 C -0.031 4.031 13 C 0.061 3.939 14 H 0.135 0.865 15 C -0.173 4.173 16 C -0.162 4.162 17 C 0.026 3.974 18 H 0.095 0.905 19 C -0.022 4.022 20 N -0.308 5.308 21 C -0.351 4.351 22 H 0.093 0.907 23 C -0.202 4.202 24 N -0.559 5.559 25 Si 0.742 3.258 26 H -0.217 1.217 27 H -0.207 1.207 28 H -0.218 1.218 29 N -0.076 5.076 30 N -0.100 5.100 31 H 0.285 0.715 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.108 0.892 43 H 0.175 0.825 44 H 0.097 0.903 45 H 0.114 0.886 46 H 0.070 0.930 47 H 0.067 0.933 48 H 0.074 0.926 49 H 0.072 0.928 50 H 0.082 0.918 51 H 0.094 0.906 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -19.983 -2.726 -3.160 20.414 hybrid contribution 0.167 0.323 0.467 0.592 sum -19.816 -2.403 -2.693 20.142 Atomic orbital electron populations 1.21780 0.95957 1.01584 1.01733 1.21540 0.95767 0.96914 1.02218 1.21627 0.94979 0.96951 1.02171 1.21634 0.95258 0.95606 1.03038 1.20157 0.86651 0.98088 1.03783 1.21348 0.94737 1.07910 0.87592 1.21436 0.90576 1.09187 0.99498 1.22086 0.95273 1.08896 0.89764 1.17037 0.81833 0.77526 0.86158 1.90706 1.86644 1.53586 1.12990 1.48093 1.04469 1.68206 1.09824 1.23456 1.01249 1.02029 0.76339 1.22311 0.84291 0.88468 0.98876 0.86488 1.22494 0.98261 0.99923 0.96637 1.22370 0.98598 0.97928 0.97343 1.21954 0.95342 0.92036 0.88090 0.90515 1.22385 0.84197 1.00431 0.95230 1.45198 1.12025 1.74590 0.98947 1.19010 0.86085 1.35242 0.94746 0.90674 1.24837 0.96788 1.00507 0.98037 1.69845 1.21490 1.51830 1.12718 0.86134 0.82402 0.77555 0.79715 1.21685 1.20705 1.21810 1.73909 1.00038 1.18719 1.14962 1.43594 1.03413 1.53313 1.09697 0.71517 0.92844 0.92830 0.92760 0.91886 0.92039 0.91993 0.91744 0.91110 0.91857 0.90787 0.89245 0.82469 0.90300 0.88639 0.92952 0.93303 0.92568 0.92774 0.91825 0.90630 0.93658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 37.16 0.37 -0.45 16 2 C -0.13 -0.75 5.93 -26.73 -0.16 -0.91 16 3 C -0.12 -0.68 5.21 -26.73 -0.14 -0.82 16 4 C -0.12 -0.80 5.20 -26.73 -0.14 -0.94 16 5 C -0.05 -0.34 5.77 -27.88 -0.16 -0.50 16 6 C 0.01 0.11 6.48 -82.21 -0.53 -0.42 16 7 C -0.18 -2.56 10.73 -39.36 -0.42 -2.98 16 8 C 0.00 0.01 6.82 -82.76 -0.56 -0.55 16 9 C 0.59 12.03 7.69 -12.39 -0.10 11.93 16 10 O -0.56 -12.35 16.40 5.30 0.09 -12.26 16 11 N -0.58 -12.05 2.29 -171.45 -0.39 -12.44 16 12 C 0.09 2.04 5.45 -2.14 -0.01 2.03 16 13 C 0.17 3.87 3.21 -64.59 -0.21 3.67 16 14 H 0.12 3.03 6.37 -51.93 -0.33 2.70 16 15 C -0.13 -2.69 6.19 -25.54 -0.16 -2.85 16 16 C -0.12 -2.37 6.18 -25.54 -0.16 -2.53 16 17 C 0.13 2.81 4.27 -65.69 -0.28 2.53 16 18 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 19 C 0.10 2.11 5.95 -3.25 -0.02 2.09 16 20 N -0.59 -14.33 2.78 -151.46 -0.42 -14.76 16 21 C -0.22 -5.93 10.37 -15.06 -0.16 -6.09 16 22 H 0.08 1.96 7.84 -52.48 -0.41 1.55 16 23 C 0.00 -0.13 5.42 -17.43 -0.09 -0.22 16 24 N -0.91 -25.10 10.37 55.49 0.58 -24.53 16 25 Si 0.91 21.48 29.56 -169.99 -5.03 16.45 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 29 N -0.24 -3.95 8.75 33.42 0.29 -3.66 16 30 N -0.39 -4.61 6.83 33.50 0.23 -4.38 16 31 H 0.44 3.68 8.96 -190.44 -1.71 1.97 16 32 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.16 2.08 8.06 -52.48 -0.42 1.66 16 44 H 0.08 2.00 7.79 -51.93 -0.40 1.59 16 45 H 0.10 1.97 4.51 -52.91 -0.24 1.73 16 46 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 47 H 0.05 0.94 7.88 -51.93 -0.41 0.54 16 48 H 0.06 1.06 7.86 -51.93 -0.41 0.65 16 49 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 50 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 51 H 0.08 1.49 7.08 -51.93 -0.37 1.12 16 52 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 405.88 15.07 6.12 6.12 Total: -1.00 -31.21 405.88 -11.65 -42.86 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -10.18 Total: 3.62 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: -2.93 Total: 2.97 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: 0.28 Total: -59.76 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.09 Total: -12.26 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -31.21 -11.65 -42.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691834196.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.358 kcal (2) G-P(sol) polarization free energy of solvation -31.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds