Wall clock time and date at job start Wed Apr 1 2020 06:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46474 * 2 1 4 4 C 1.52998 * 109.46882 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47439 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47164 * 179.97438 * 5 4 3 7 7 C 1.35363 * 126.38318 * 85.00432 * 6 5 4 8 8 C 1.41503 * 105.50247 * 179.97438 * 7 6 5 9 9 C 1.47718 * 126.51711 * 179.97438 * 8 7 6 10 10 O 1.21575 * 119.99621 * 6.31088 * 9 8 7 11 11 N 1.34773 * 119.99705 * 186.31006 * 9 8 7 12 12 C 1.47159 * 120.71091 * 6.55747 * 11 9 8 13 13 C 1.55893 * 107.94983 * 132.45322 * 12 11 9 14 14 H 1.09002 * 112.45429 * 181.84690 * 13 12 11 15 15 C 1.54547 * 108.44171 * 307.13071 * 13 12 11 16 16 C 1.53728 * 104.95646 * 88.29104 * 15 13 12 17 17 C 1.54554 * 104.94973 * 359.97438 * 16 15 13 18 18 H 1.08999 * 112.17566 * 146.29045 * 17 16 15 19 19 C 1.47161 * 120.70927 * 186.57707 * 11 9 8 20 20 N 1.48301 * 104.35582 * 24.58009 * 17 16 15 21 21 C 1.36937 * 128.07623 * 139.08130 * 20 17 16 22 22 H 1.08006 * 119.99870 * 344.37272 * 21 20 17 23 23 C 1.38809 * 120.00281 * 164.36526 * 21 20 17 24 24 N 1.31618 * 120.00172 * 351.41325 * 23 21 20 25 25 Si 1.86806 * 120.00281 * 171.40572 * 23 21 20 26 26 H 1.48502 * 109.47114 * 270.00604 * 25 23 21 27 27 H 1.48503 * 109.46629 * 30.00377 * 25 23 21 28 28 H 1.48497 * 109.47189 * 150.00240 * 25 23 21 29 29 N 1.31807 * 106.96572 * 0.24092 * 8 7 6 30 30 N 1.28469 * 110.07025 * 359.59110 * 29 8 7 31 31 H 0.97003 * 124.88752 * 180.12640 * 30 29 8 32 32 H 1.09006 * 109.46718 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47373 * 299.99814 * 1 2 3 34 34 H 1.08998 * 109.47277 * 60.00825 * 1 2 3 35 35 H 1.08998 * 109.47373 * 240.00186 * 2 1 3 36 36 H 1.08997 * 109.46779 * 119.99348 * 2 1 3 37 37 H 1.08998 * 109.47168 * 60.00061 * 3 2 1 38 38 H 1.08997 * 109.47085 * 299.99160 * 3 2 1 39 39 H 1.09002 * 109.47057 * 59.99735 * 4 3 2 40 40 H 1.08998 * 109.47564 * 300.00207 * 4 3 2 41 41 H 1.09002 * 109.46933 * 60.00001 * 5 4 3 42 42 H 1.09004 * 109.47353 * 300.00095 * 5 4 3 43 43 H 1.08009 * 127.24878 * 359.97438 * 7 6 5 44 44 H 1.08998 * 109.75163 * 252.40609 * 12 11 9 45 45 H 1.08999 * 109.75560 * 13.09490 * 12 11 9 46 46 H 1.09004 * 110.36299 * 207.00957 * 15 13 12 47 47 H 1.09003 * 110.36488 * 329.20878 * 15 13 12 48 48 H 1.08996 * 110.42030 * 241.06950 * 16 15 13 49 49 H 1.08998 * 110.20960 * 118.81865 * 16 15 13 50 50 H 1.08999 * 109.75044 * 107.58848 * 19 11 9 51 51 H 1.09007 * 109.78842 * 346.87891 * 19 11 9 52 52 H 0.96999 * 120.00631 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5698 1.4427 0.0006 5 6 4.0798 2.8852 0.0000 6 6 5.5868 2.8852 0.0013 7 6 6.3907 2.7895 -1.0836 8 6 7.7124 2.8345 -0.5801 9 6 8.9575 2.7643 -1.3719 10 8 8.9066 2.7726 -2.5866 11 7 10.1497 2.6911 -0.7477 12 6 10.2245 2.5357 0.7137 13 6 11.2424 1.3964 1.0242 14 1 11.3311 1.1969 2.0921 15 6 10.8356 0.1437 0.2157 16 6 11.5476 0.2967 -1.1381 17 6 12.3234 1.6293 -1.0322 18 1 13.2641 1.6025 -1.5822 19 6 11.4045 2.7655 -1.5130 20 7 12.5306 1.8194 0.4239 21 6 13.6520 2.2737 1.0651 22 1 14.5973 2.3039 0.5436 23 6 13.5738 2.6957 2.3852 24 7 12.4002 2.8201 2.9679 25 14 15.1342 3.0869 3.3348 26 1 15.6199 1.8599 4.0159 27 1 16.1752 3.5769 2.3959 28 1 14.8479 4.1348 4.3473 29 7 7.6213 2.9450 0.7301 30 7 6.3870 2.9813 1.0847 31 1 6.0747 3.0616 1.9996 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3634 0.5137 -0.8900 35 1 1.8934 -0.5138 -0.8900 36 1 1.8933 -0.5137 0.8900 37 1 1.6765 1.9564 0.8900 38 1 1.6766 1.9563 -0.8900 39 1 3.9336 0.9287 -0.8891 40 1 3.9329 0.9290 0.8908 41 1 3.7161 3.3995 0.8895 42 1 3.7168 3.3985 -0.8905 43 1 6.0872 2.6981 -2.1161 44 1 10.5586 3.4690 1.1668 45 1 9.2441 2.2660 1.1063 46 1 11.1763 -0.7605 0.7202 47 1 9.7547 0.1157 0.0778 48 1 10.8193 0.3456 -1.9475 49 1 12.2372 -0.5324 -1.2967 50 1 11.8860 3.7276 -1.3383 51 1 11.1959 2.6456 -2.5762 52 1 12.3456 3.1146 3.8905 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691834196.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:34:52 Heat of formation + Delta-G solvation = 45.202459 kcal Electronic energy + Delta-G solvation = -31268.341651 eV Core-core repulsion = 27269.173658 eV Total energy + Delta-G solvation = -3999.167992 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -43.70814 -41.31927 -39.21016 -37.24781 -35.42808 -34.42501 -34.03992 -32.93840 -31.99444 -31.06549 -30.79788 -28.03378 -27.16731 -26.01643 -25.35789 -24.16231 -23.31794 -21.94369 -21.78212 -21.32116 -20.98439 -20.14006 -18.74084 -18.45807 -17.34066 -17.10062 -16.88929 -16.56972 -16.45072 -16.29061 -15.56934 -15.05025 -15.04273 -14.87325 -14.64756 -14.58814 -14.39208 -14.32706 -14.12041 -13.72346 -13.56343 -13.31828 -13.20324 -12.94194 -12.82060 -12.72735 -12.59881 -12.56453 -12.02339 -12.00005 -11.83078 -11.74942 -11.68094 -11.58304 -11.46162 -11.31767 -11.29224 -11.16886 -11.05944 -10.57522 -10.38055 -9.89085 -9.67962 -8.65692 -7.82544 -5.18493 0.55482 1.15404 1.49639 1.50107 1.58071 1.87000 2.25798 2.38777 2.52590 3.34978 3.37658 3.52977 3.65748 3.90851 4.03657 4.07902 4.09327 4.17461 4.22261 4.30163 4.32524 4.36233 4.52907 4.57279 4.58391 4.61942 4.69230 4.79695 4.80354 4.83593 4.93613 4.95298 5.00296 5.05105 5.07855 5.09149 5.09507 5.17435 5.22237 5.27443 5.31255 5.35894 5.40314 5.51376 5.52797 5.56797 5.58365 5.62418 5.84508 6.19345 6.25142 6.53967 6.89940 7.09312 7.20817 7.73828 8.54462 9.28736 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016410 B = 0.002438 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.866905 B =11482.970574 C =12080.322852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.130 4.130 3 C -0.114 4.114 4 C -0.113 4.113 5 C -0.044 4.044 6 C 0.042 3.958 7 C -0.196 4.196 8 C -0.032 4.032 9 C 0.588 3.412 10 O -0.580 6.580 11 N -0.581 5.581 12 C 0.114 3.886 13 C 0.165 3.835 14 H 0.086 0.914 15 C -0.124 4.124 16 C -0.112 4.112 17 C 0.131 3.869 18 H 0.088 0.912 19 C 0.106 3.894 20 N -0.605 5.605 21 C -0.234 4.234 22 H 0.076 0.924 23 C -0.054 4.054 24 N -0.932 5.932 25 Si 0.972 3.028 26 H -0.289 1.289 27 H -0.274 1.274 28 H -0.298 1.298 29 N -0.270 5.270 30 N -0.369 5.369 31 H 0.458 0.542 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.100 0.900 42 H 0.104 0.896 43 H 0.164 0.836 44 H 0.037 0.963 45 H 0.111 0.889 46 H 0.058 0.942 47 H 0.056 0.944 48 H 0.062 0.938 49 H 0.071 0.929 50 H 0.045 0.955 51 H 0.087 0.913 52 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.752 -3.345 -3.879 23.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.167 4.167 3 C -0.152 4.152 4 C -0.152 4.152 5 C -0.083 4.083 6 C -0.085 4.085 7 C -0.224 4.224 8 C -0.191 4.191 9 C 0.376 3.624 10 O -0.460 6.460 11 N -0.311 5.311 12 C -0.010 4.010 13 C 0.057 3.943 14 H 0.103 0.897 15 C -0.163 4.163 16 C -0.151 4.151 17 C 0.023 3.977 18 H 0.106 0.894 19 C -0.019 4.019 20 N -0.326 5.326 21 C -0.363 4.363 22 H 0.094 0.906 23 C -0.249 4.249 24 N -0.580 5.580 25 Si 0.802 3.198 26 H -0.216 1.216 27 H -0.199 1.199 28 H -0.224 1.224 29 N -0.106 5.106 30 N -0.084 5.084 31 H 0.305 0.695 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.119 0.881 42 H 0.122 0.878 43 H 0.182 0.818 44 H 0.055 0.945 45 H 0.128 0.872 46 H 0.077 0.923 47 H 0.074 0.926 48 H 0.081 0.919 49 H 0.089 0.911 50 H 0.064 0.936 51 H 0.105 0.895 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -21.951 -3.144 -3.356 22.427 hybrid contribution 0.652 0.473 0.518 0.958 sum -21.299 -2.671 -2.838 21.652 Atomic orbital electron populations 1.21778 0.95503 1.01708 1.02050 1.21557 0.96198 0.97187 1.01778 1.21581 0.93875 0.96782 1.02950 1.21581 0.96132 0.95083 1.02367 1.20346 0.83294 0.98767 1.05848 1.21839 0.96326 1.04346 0.86016 1.21627 0.89585 1.10315 1.00855 1.21849 0.95205 1.11589 0.90433 1.17402 0.82383 0.76433 0.86202 1.90673 1.87099 1.54397 1.13865 1.48079 1.04943 1.68808 1.09272 1.23074 1.01549 0.99540 0.76855 1.22219 0.84302 0.90158 0.97580 0.89658 1.22380 0.98789 0.98513 0.96642 1.22278 0.98672 0.97296 0.96838 1.22133 0.96203 0.92967 0.86382 0.89408 1.22290 0.84299 0.99503 0.95805 1.45376 1.11928 1.74762 1.00580 1.19287 0.86981 1.34898 0.95161 0.90582 1.25541 0.99311 1.01100 0.98943 1.70023 1.22908 1.52614 1.12427 0.85178 0.79518 0.76906 0.78223 1.21582 1.19946 1.22447 1.73695 1.02369 1.19938 1.14637 1.43633 1.02350 1.51485 1.10981 0.69479 0.92895 0.92429 0.92505 0.92491 0.92395 0.90983 0.91162 0.92239 0.92209 0.88144 0.87787 0.81796 0.94473 0.87210 0.92280 0.92562 0.91898 0.91076 0.93643 0.89495 0.94299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 71.98 0.71 -0.65 16 2 C -0.13 -1.30 5.93 30.60 0.18 -1.12 16 3 C -0.11 -0.96 5.21 30.59 0.16 -0.81 16 4 C -0.11 -1.23 5.20 30.59 0.16 -1.07 16 5 C -0.04 -0.46 5.77 29.85 0.17 -0.29 16 6 C 0.04 0.82 6.48 41.40 0.27 1.09 16 7 C -0.20 -5.34 10.73 22.41 0.24 -5.10 16 8 C -0.03 -1.12 6.82 42.46 0.29 -0.83 16 9 C 0.59 24.18 7.69 86.75 0.67 24.85 16 10 O -0.58 -25.56 16.40 -3.95 -0.06 -25.63 16 11 N -0.58 -24.72 2.29 -814.63 -1.86 -26.58 16 12 C 0.11 5.15 5.45 87.25 0.48 5.63 16 13 C 0.16 7.75 3.21 46.18 0.15 7.90 16 14 H 0.09 4.57 6.37 -2.39 -0.02 4.56 16 15 C -0.12 -4.90 6.19 31.37 0.19 -4.71 16 16 C -0.11 -4.15 6.18 31.37 0.19 -3.96 16 17 C 0.13 5.44 4.27 45.45 0.19 5.64 16 18 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 19 C 0.11 4.41 5.95 86.53 0.51 4.93 16 20 N -0.60 -30.02 2.78 -633.09 -1.76 -31.77 16 21 C -0.23 -12.69 10.37 84.03 0.87 -11.82 16 22 H 0.08 4.00 7.84 -2.91 -0.02 3.98 16 23 C -0.05 -2.98 5.42 84.86 0.46 -2.52 16 24 N -0.93 -52.90 10.37 21.65 0.22 -52.68 16 25 Si 0.97 44.85 29.56 68.60 2.03 46.88 16 26 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 27 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 28 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 29 N -0.27 -8.71 8.75 -48.17 -0.42 -9.13 16 30 N -0.37 -8.10 6.83 -47.93 -0.33 -8.42 16 31 H 0.46 6.54 8.96 -219.99 -1.97 4.56 16 32 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16 33 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.10 0.91 8.14 -2.38 -0.02 0.90 16 43 H 0.16 4.14 8.06 -2.91 -0.02 4.12 16 44 H 0.04 1.97 7.79 -2.39 -0.02 1.95 16 45 H 0.11 4.63 4.51 -3.65 -0.02 4.61 16 46 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 47 H 0.06 2.13 7.88 -2.39 -0.02 2.11 16 48 H 0.06 2.26 7.86 -2.39 -0.02 2.24 16 49 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 50 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 51 H 0.09 3.42 7.08 -2.38 -0.02 3.40 16 52 H 0.25 13.77 8.31 -92.71 -0.77 13.00 16 Total: -1.00 -68.93 405.88 2.66 -66.27 By element: Atomic # 1 Polarization: 24.96 SS G_CDS: -1.06 Total: 23.89 kcal Atomic # 6 Polarization: 11.26 SS G_CDS: 5.90 Total: 17.16 kcal Atomic # 7 Polarization: -124.44 SS G_CDS: -4.15 Total: -128.58 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: -0.06 Total: -25.63 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -68.93 2.66 -66.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691834196.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.475 kcal (2) G-P(sol) polarization free energy of solvation -68.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds