Wall clock time and date at job start Wed Apr 1 2020 06:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.46898 * 2 1 4 4 C 1.53001 * 109.46926 * 240.00677 * 2 1 3 5 5 C 1.50695 * 109.47552 * 120.00191 * 2 1 3 6 6 N 1.31868 * 118.95212 * 59.99861 * 5 2 1 7 7 C 1.32149 * 120.96876 * 180.02562 * 6 5 2 8 8 C 1.39945 * 118.92462 * 359.97438 * 7 6 5 9 9 C 1.47825 * 120.94251 * 180.02562 * 8 7 6 10 10 O 1.21554 * 119.99609 * 359.97438 * 9 8 7 11 11 N 1.34779 * 120.00418 * 180.02562 * 9 8 7 12 12 C 1.46498 * 120.00001 * 179.97438 * 11 9 8 13 13 H 1.09004 * 110.01724 * 33.61102 * 12 11 9 14 14 C 1.54259 * 110.03350 * 272.16412 * 12 11 9 15 15 C 1.54890 * 104.19721 * 264.32591 * 14 12 11 16 16 C 1.54888 * 102.74845 * 322.05853 * 15 14 12 17 17 C 1.53877 * 110.03163 * 154.99756 * 12 11 9 18 18 H 1.09003 * 110.03133 * 359.95145 * 17 12 11 19 19 C 1.53001 * 110.03508 * 238.57045 * 17 12 11 20 20 N 1.46490 * 109.47264 * 174.99756 * 19 17 12 21 21 C 1.36935 * 120.00121 * 179.97438 * 20 19 17 22 22 H 1.07997 * 120.00139 * 0.02562 * 21 20 19 23 23 C 1.38816 * 120.00401 * 180.02562 * 21 20 19 24 24 N 1.31624 * 119.99569 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00172 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47055 * 180.02562 * 25 23 21 27 27 H 1.48505 * 109.46653 * 299.99639 * 25 23 21 28 28 H 1.48495 * 109.47483 * 60.00002 * 25 23 21 29 29 C 1.39952 * 118.12093 * 0.27326 * 8 7 6 30 30 N 1.31868 * 118.95289 * 240.02776 * 5 2 1 31 31 H 1.09005 * 109.47554 * 299.99612 * 1 2 3 32 32 H 1.09001 * 109.47734 * 59.99792 * 1 2 3 33 33 H 1.09006 * 109.47478 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.46829 * 180.02562 * 3 2 1 35 35 H 1.08996 * 109.47082 * 300.00143 * 3 2 1 36 36 H 1.09000 * 109.46667 * 60.00351 * 3 2 1 37 37 H 1.08999 * 109.46870 * 299.99405 * 4 2 1 38 38 H 1.08996 * 109.47676 * 59.99476 * 4 2 1 39 39 H 1.09001 * 109.47019 * 180.02562 * 4 2 1 40 40 H 1.08001 * 120.53597 * 179.97438 * 7 6 5 41 41 H 0.96997 * 119.99500 * 359.97438 * 11 9 8 42 42 H 1.09003 * 110.48477 * 23.00627 * 14 12 11 43 43 H 1.09000 * 110.48775 * 145.51463 * 14 12 11 44 44 H 1.09003 * 110.75396 * 80.37336 * 15 14 12 45 45 H 1.08997 * 110.75901 * 203.55615 * 15 14 12 46 46 H 1.09000 * 110.48442 * 279.26009 * 16 15 14 47 47 H 1.09000 * 110.48713 * 156.61850 * 16 15 14 48 48 H 1.09003 * 109.46836 * 54.99463 * 19 17 12 49 49 H 1.08999 * 109.47071 * 295.00503 * 19 17 12 50 50 H 0.97000 * 120.00577 * 0.02562 * 20 19 17 51 51 H 0.97001 * 119.99885 * 359.97438 * 24 23 21 52 52 H 1.07998 * 120.54166 * 179.70409 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 2.0324 -0.7104 1.2304 6 7 1.7012 -1.9729 1.4185 7 6 2.1192 -2.6341 2.4836 8 6 2.9250 -1.9730 3.4175 9 6 3.4178 -2.6699 4.6245 10 8 3.1238 -3.8335 4.8170 11 7 4.1924 -2.0148 5.5119 12 6 4.6803 -2.7053 6.7082 13 1 4.8656 -3.7557 6.4833 14 6 3.6478 -2.5820 7.8477 15 6 4.1399 -1.3698 8.6768 16 6 5.6797 -1.5328 8.6396 17 6 5.9723 -2.0383 7.2118 18 1 6.2367 -1.2013 6.5655 19 6 7.1122 -3.0584 7.2402 20 7 8.3609 -2.3854 7.6060 21 6 9.5241 -3.1022 7.6961 22 1 9.5211 -4.1637 7.4972 23 6 10.7073 -2.4645 8.0433 24 7 10.7109 -1.1709 8.2863 25 14 12.2942 -3.4423 8.1656 26 1 13.4059 -2.5358 8.5499 27 1 12.1437 -4.5036 9.1934 28 1 12.5946 -4.0650 6.8514 29 6 3.2466 -0.6320 3.1793 30 7 2.7887 -0.0496 2.0849 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0277 -0.0005 34 1 3.1299 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 1.6766 -1.7488 -1.2494 38 1 1.6765 -0.2073 -2.1393 39 1 3.1299 -0.7215 -1.2491 40 1 1.8435 -3.6679 2.6309 41 1 4.4266 -1.0862 5.3584 42 1 2.6542 -2.3893 7.4429 43 1 3.6418 -3.4860 8.4566 44 1 3.8392 -0.4331 8.2074 45 1 3.7674 -1.4245 9.6996 46 1 6.0036 -2.2664 9.3778 47 1 6.1691 -0.5744 8.8127 48 1 7.2189 -3.5116 6.2546 49 1 6.8884 -3.8329 7.9738 50 1 8.3636 -1.4320 7.7851 51 1 9.8869 -0.6632 8.2224 52 1 3.8618 -0.0829 3.8767 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715575851.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:02:10 Heat of formation + Delta-G solvation = 2.685641 kcal Electronic energy + Delta-G solvation = -30141.173745 eV Core-core repulsion = 26140.162085 eV Total energy + Delta-G solvation = -4001.011660 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.77893 -40.08432 -38.19752 -37.02354 -34.89068 -34.38518 -33.62541 -31.87886 -31.45349 -28.46396 -27.92471 -27.71424 -27.68502 -25.56348 -24.74078 -24.11220 -22.48746 -21.69349 -20.50092 -20.15433 -19.93010 -18.20396 -17.93176 -17.19217 -16.74271 -16.34185 -15.75733 -15.35679 -15.12433 -14.89241 -14.81422 -14.33069 -14.27061 -14.06803 -13.89117 -13.80506 -13.70107 -13.30136 -13.14243 -12.65230 -12.62187 -12.25600 -12.19249 -12.02156 -11.68811 -11.52407 -11.42343 -11.39747 -11.30588 -11.25883 -10.99341 -10.83184 -10.77947 -10.60190 -10.53941 -10.35780 -10.10482 -9.98762 -9.93277 -9.65532 -9.28221 -9.10328 -8.89287 -7.02066 -6.11939 -3.11440 0.04248 0.63911 2.55084 2.83619 3.29554 3.40406 3.51310 3.54708 3.63597 3.72047 4.03810 4.32328 4.42549 4.47789 4.54041 4.54330 4.59492 4.68237 4.71737 4.91988 4.95140 5.20879 5.24127 5.31961 5.34856 5.41439 5.46205 5.48077 5.50285 5.53877 5.55502 5.61349 5.67065 5.69527 5.71373 5.75205 5.87494 5.92262 5.93212 5.98461 6.00757 6.02316 6.13512 6.32312 6.41650 6.46941 6.48472 6.65256 6.76358 7.22665 7.60657 7.79908 7.91905 8.74528 9.21370 10.07719 10.22570 11.36672 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013011 B = 0.002128 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.567662 B =13156.329337 C =14161.221043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.003 4.003 3 C -0.130 4.130 4 C -0.137 4.137 5 C 0.346 3.654 6 N -0.515 5.515 7 C 0.210 3.790 8 C -0.246 4.246 9 C 0.569 3.431 10 O -0.530 6.530 11 N -0.711 5.711 12 C 0.146 3.854 13 H 0.097 0.903 14 C -0.130 4.130 15 C -0.125 4.125 16 C -0.113 4.113 17 C -0.105 4.105 18 H 0.076 0.924 19 C 0.167 3.833 20 N -0.742 5.742 21 C -0.331 4.331 22 H 0.064 0.936 23 C -0.046 4.046 24 N -0.944 5.944 25 Si 1.080 2.920 26 H -0.285 1.285 27 H -0.295 1.295 28 H -0.295 1.295 29 C 0.185 3.815 30 N -0.513 5.513 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.055 0.945 40 H 0.182 0.818 41 H 0.398 0.602 42 H 0.065 0.935 43 H 0.076 0.924 44 H 0.062 0.938 45 H 0.066 0.934 46 H 0.074 0.926 47 H 0.067 0.933 48 H 0.019 0.981 49 H 0.024 0.976 50 H 0.367 0.633 51 H 0.254 0.746 52 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.345 4.341 -13.709 27.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.005 4.005 3 C -0.187 4.187 4 C -0.195 4.195 5 C 0.080 3.920 6 N -0.228 5.228 7 C 0.043 3.957 8 C -0.254 4.254 9 C 0.354 3.646 10 O -0.407 6.407 11 N -0.362 5.362 12 C 0.042 3.958 13 H 0.115 0.885 14 C -0.169 4.169 15 C -0.163 4.163 16 C -0.151 4.151 17 C -0.124 4.124 18 H 0.095 0.905 19 C 0.039 3.961 20 N -0.387 5.387 21 C -0.462 4.462 22 H 0.082 0.918 23 C -0.243 4.243 24 N -0.590 5.590 25 Si 0.911 3.089 26 H -0.210 1.210 27 H -0.222 1.222 28 H -0.223 1.223 29 C 0.018 3.982 30 N -0.226 5.226 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.199 0.801 41 H 0.233 0.767 42 H 0.084 0.916 43 H 0.095 0.905 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.093 0.907 47 H 0.086 0.914 48 H 0.036 0.964 49 H 0.041 0.959 50 H 0.200 0.800 51 H 0.065 0.935 52 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -22.226 3.817 -14.083 26.588 hybrid contribution -1.078 0.111 0.528 1.206 sum -23.304 3.928 -13.556 27.245 Atomic orbital electron populations 1.21852 0.92219 1.03080 1.02259 1.19489 0.96474 0.95292 0.89276 1.21739 1.01950 0.93094 1.01962 1.21858 1.01187 1.01052 0.95405 1.23410 0.87614 0.87022 0.93975 1.68317 1.23749 1.09361 1.21324 1.23522 0.86441 1.00127 0.85616 1.21832 1.05869 0.97559 1.00107 1.17756 0.78696 0.86208 0.81984 1.90801 1.57516 1.16000 1.76399 1.46095 1.51392 1.15491 1.23187 1.21734 0.92923 0.97833 0.83301 0.88523 1.22743 0.98182 0.99209 0.96716 1.22539 0.96255 0.97652 0.99835 1.22381 0.94559 1.01806 0.96304 1.22257 0.93894 0.99096 0.97146 0.90536 1.20665 0.85057 0.93024 0.97332 1.42318 1.03891 1.07769 1.84741 1.20031 0.88006 0.93503 1.44618 0.91812 1.25776 1.00928 0.97747 0.99871 1.70896 1.29271 1.06384 1.52441 0.83243 0.75607 0.74197 0.75899 1.21022 1.22245 1.22284 1.23519 0.91530 0.90547 0.92614 1.68319 1.11664 1.39097 1.03480 0.92684 0.91320 0.91316 0.91790 0.92139 0.91872 0.91307 0.91306 0.92580 0.80087 0.76711 0.91616 0.90510 0.91938 0.91562 0.90683 0.91385 0.96354 0.95859 0.80017 0.93499 0.81137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 8.37 37.16 0.31 -0.59 16 2 C 0.00 -0.03 0.92 -155.66 -0.14 -0.17 16 3 C -0.13 -0.92 7.66 37.16 0.28 -0.63 16 4 C -0.14 -0.96 8.37 37.16 0.31 -0.65 16 5 C 0.35 3.50 6.25 -157.07 -0.98 2.52 16 6 N -0.51 -5.45 9.77 -10.40 -0.10 -5.55 16 7 C 0.21 2.21 10.88 -16.78 -0.18 2.02 16 8 C -0.25 -2.59 5.91 -104.69 -0.62 -3.21 16 9 C 0.57 6.98 7.78 -12.34 -0.10 6.89 16 10 O -0.53 -8.18 16.10 5.32 0.09 -8.10 16 11 N -0.71 -7.88 4.99 -53.67 -0.27 -8.14 16 12 C 0.15 1.90 2.90 -66.82 -0.19 1.71 16 13 H 0.10 1.45 7.09 -51.93 -0.37 1.08 16 14 C -0.13 -1.50 6.54 -25.08 -0.16 -1.67 16 15 C -0.13 -1.38 6.91 -24.74 -0.17 -1.55 16 16 C -0.11 -1.57 6.08 -25.07 -0.15 -1.73 16 17 C -0.10 -1.55 2.73 -89.50 -0.24 -1.79 16 18 H 0.08 1.12 7.62 -51.93 -0.40 0.72 16 19 C 0.17 3.32 5.31 -4.05 -0.02 3.30 16 20 N -0.74 -18.39 5.45 -59.91 -0.33 -18.72 16 21 C -0.33 -9.37 9.99 -15.06 -0.15 -9.52 16 22 H 0.06 1.79 7.83 -52.49 -0.41 1.38 16 23 C -0.05 -1.34 5.50 -17.43 -0.10 -1.43 16 24 N -0.94 -29.05 13.70 55.49 0.76 -28.29 16 25 Si 1.08 26.04 29.92 -169.99 -5.09 20.95 16 26 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.30 -6.80 7.11 56.52 0.40 -6.40 16 28 H -0.30 -6.83 7.11 56.52 0.40 -6.43 16 29 C 0.19 1.73 10.81 -16.77 -0.18 1.55 16 30 N -0.51 -5.28 8.98 -10.39 -0.09 -5.37 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.49 8.01 -51.93 -0.42 0.08 16 34 H 0.06 0.51 8.04 -51.93 -0.42 0.09 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.06 0.48 8.04 -51.93 -0.42 0.06 16 37 H 0.07 0.52 8.01 -51.93 -0.42 0.10 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.18 1.70 7.74 -52.49 -0.41 1.30 16 41 H 0.40 3.46 6.46 -40.82 -0.26 3.20 16 42 H 0.07 0.74 8.04 -51.93 -0.42 0.33 16 43 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.07 1.18 7.76 -51.93 -0.40 0.77 16 47 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 48 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.02 0.48 8.00 -51.93 -0.42 0.06 16 50 H 0.37 9.18 6.38 -40.82 -0.26 8.92 16 51 H 0.25 7.64 6.77 -40.82 -0.28 7.36 16 52 H 0.17 1.12 6.54 -52.49 -0.34 0.78 16 LS Contribution 416.87 15.07 6.28 6.28 Total: -1.00 -33.97 416.87 -9.89 -43.86 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -8.65 Total: 8.03 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: -2.49 Total: -4.95 kcal Atomic # 7 Polarization: -66.04 SS G_CDS: -0.03 Total: -66.07 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: 0.09 Total: -8.10 kcal Atomic # 14 Polarization: 26.04 SS G_CDS: -5.09 Total: 20.95 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -33.97 -9.89 -43.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715575851.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.546 kcal (2) G-P(sol) polarization free energy of solvation -33.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds