Wall clock time and date at job start Wed Apr 1 2020 06:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.46898 * 2 1 4 4 C 1.53001 * 109.46926 * 240.00677 * 2 1 3 5 5 C 1.50695 * 109.47552 * 120.00191 * 2 1 3 6 6 N 1.31868 * 118.95212 * 59.99861 * 5 2 1 7 7 C 1.32149 * 120.96876 * 180.02562 * 6 5 2 8 8 C 1.39945 * 118.92462 * 359.97438 * 7 6 5 9 9 C 1.47825 * 120.94251 * 180.02562 * 8 7 6 10 10 O 1.21554 * 119.99609 * 359.97438 * 9 8 7 11 11 N 1.34779 * 120.00418 * 180.02562 * 9 8 7 12 12 C 1.46498 * 120.00001 * 179.97438 * 11 9 8 13 13 H 1.09004 * 110.01724 * 33.61102 * 12 11 9 14 14 C 1.54259 * 110.03350 * 272.16412 * 12 11 9 15 15 C 1.54890 * 104.19721 * 264.32591 * 14 12 11 16 16 C 1.54888 * 102.74845 * 322.05853 * 15 14 12 17 17 C 1.53877 * 110.03163 * 154.99756 * 12 11 9 18 18 H 1.09003 * 110.03133 * 359.95145 * 17 12 11 19 19 C 1.53001 * 110.03508 * 238.57045 * 17 12 11 20 20 N 1.46490 * 109.47264 * 174.99756 * 19 17 12 21 21 C 1.36935 * 120.00121 * 179.97438 * 20 19 17 22 22 H 1.07997 * 120.00139 * 0.02562 * 21 20 19 23 23 C 1.38816 * 120.00401 * 180.02562 * 21 20 19 24 24 N 1.31624 * 119.99569 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00172 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47055 * 180.02562 * 25 23 21 27 27 H 1.48505 * 109.46653 * 299.99639 * 25 23 21 28 28 H 1.48495 * 109.47483 * 60.00002 * 25 23 21 29 29 C 1.39952 * 118.12093 * 0.27326 * 8 7 6 30 30 N 1.31868 * 118.95289 * 240.02776 * 5 2 1 31 31 H 1.09005 * 109.47554 * 299.99612 * 1 2 3 32 32 H 1.09001 * 109.47734 * 59.99792 * 1 2 3 33 33 H 1.09006 * 109.47478 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.46829 * 180.02562 * 3 2 1 35 35 H 1.08996 * 109.47082 * 300.00143 * 3 2 1 36 36 H 1.09000 * 109.46667 * 60.00351 * 3 2 1 37 37 H 1.08999 * 109.46870 * 299.99405 * 4 2 1 38 38 H 1.08996 * 109.47676 * 59.99476 * 4 2 1 39 39 H 1.09001 * 109.47019 * 180.02562 * 4 2 1 40 40 H 1.08001 * 120.53597 * 179.97438 * 7 6 5 41 41 H 0.96997 * 119.99500 * 359.97438 * 11 9 8 42 42 H 1.09003 * 110.48477 * 23.00627 * 14 12 11 43 43 H 1.09000 * 110.48775 * 145.51463 * 14 12 11 44 44 H 1.09003 * 110.75396 * 80.37336 * 15 14 12 45 45 H 1.08997 * 110.75901 * 203.55615 * 15 14 12 46 46 H 1.09000 * 110.48442 * 279.26009 * 16 15 14 47 47 H 1.09000 * 110.48713 * 156.61850 * 16 15 14 48 48 H 1.09003 * 109.46836 * 54.99463 * 19 17 12 49 49 H 1.08999 * 109.47071 * 295.00503 * 19 17 12 50 50 H 0.97000 * 120.00577 * 0.02562 * 20 19 17 51 51 H 0.97001 * 119.99885 * 359.97438 * 24 23 21 52 52 H 1.07998 * 120.54166 * 179.70409 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 2.0324 -0.7104 1.2304 6 7 1.7012 -1.9729 1.4185 7 6 2.1192 -2.6341 2.4836 8 6 2.9250 -1.9730 3.4175 9 6 3.4178 -2.6699 4.6245 10 8 3.1238 -3.8335 4.8170 11 7 4.1924 -2.0148 5.5119 12 6 4.6803 -2.7053 6.7082 13 1 4.8656 -3.7557 6.4833 14 6 3.6478 -2.5820 7.8477 15 6 4.1399 -1.3698 8.6768 16 6 5.6797 -1.5328 8.6396 17 6 5.9723 -2.0383 7.2118 18 1 6.2367 -1.2013 6.5655 19 6 7.1122 -3.0584 7.2402 20 7 8.3609 -2.3854 7.6060 21 6 9.5241 -3.1022 7.6961 22 1 9.5211 -4.1637 7.4972 23 6 10.7073 -2.4645 8.0433 24 7 10.7109 -1.1709 8.2863 25 14 12.2942 -3.4423 8.1656 26 1 13.4059 -2.5358 8.5499 27 1 12.1437 -4.5036 9.1934 28 1 12.5946 -4.0650 6.8514 29 6 3.2466 -0.6320 3.1793 30 7 2.7887 -0.0496 2.0849 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0277 -0.0005 34 1 3.1299 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 1.6766 -1.7488 -1.2494 38 1 1.6765 -0.2073 -2.1393 39 1 3.1299 -0.7215 -1.2491 40 1 1.8435 -3.6679 2.6309 41 1 4.4266 -1.0862 5.3584 42 1 2.6542 -2.3893 7.4429 43 1 3.6418 -3.4860 8.4566 44 1 3.8392 -0.4331 8.2074 45 1 3.7674 -1.4245 9.6996 46 1 6.0036 -2.2664 9.3778 47 1 6.1691 -0.5744 8.8127 48 1 7.2189 -3.5116 6.2546 49 1 6.8884 -3.8329 7.9738 50 1 8.3636 -1.4320 7.7851 51 1 9.8869 -0.6632 8.2224 52 1 3.8618 -0.0829 3.8767 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715575851.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:02:09 Heat of formation + Delta-G solvation = -18.395681 kcal Electronic energy + Delta-G solvation = -30142.087900 eV Core-core repulsion = 26140.162085 eV Total energy + Delta-G solvation = -4001.925814 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.57148 -41.10503 -39.32946 -37.68295 -36.69232 -35.31438 -34.63560 -33.30046 -32.67161 -30.05300 -28.93917 -28.28825 -28.21409 -26.52187 -25.92494 -25.44600 -24.20570 -22.66298 -21.33445 -21.28469 -20.85056 -19.53990 -19.04696 -18.60897 -17.53665 -17.44995 -16.76764 -16.59953 -16.17457 -16.03830 -15.71874 -15.55889 -15.39203 -15.17192 -15.00349 -14.90245 -14.69550 -14.60573 -14.49554 -13.56120 -13.24206 -13.15171 -12.90351 -12.86540 -12.74360 -12.63955 -12.58305 -12.55856 -12.18001 -12.08511 -12.01946 -11.96857 -11.91083 -11.88079 -11.84983 -11.83211 -11.56336 -11.29693 -11.10745 -10.94347 -10.75170 -10.43563 -10.19292 -9.13298 -8.42003 -5.35690 -0.76570 -0.13645 1.57193 1.61956 1.66605 1.83379 1.87189 2.59256 2.61366 2.68927 2.90181 3.26632 3.34661 3.38036 3.50052 3.58339 3.74021 3.78351 3.82682 3.96521 3.97133 3.98445 4.29499 4.31610 4.37532 4.41782 4.53218 4.54252 4.57387 4.68662 4.75610 4.76918 4.86239 4.89545 4.91144 4.94161 4.95389 4.97940 5.00060 5.08708 5.11110 5.18084 5.26419 5.29304 5.33620 5.41725 5.46225 5.46962 5.55996 5.71479 6.30718 6.49000 6.83147 6.97529 7.07648 7.97932 8.08717 9.10277 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013011 B = 0.002128 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.567662 B =13156.329337 C =14161.221043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.008 4.008 3 C -0.124 4.124 4 C -0.133 4.133 5 C 0.339 3.661 6 N -0.524 5.524 7 C 0.205 3.795 8 C -0.253 4.253 9 C 0.573 3.427 10 O -0.566 6.566 11 N -0.700 5.700 12 C 0.154 3.846 13 H 0.074 0.926 14 C -0.124 4.124 15 C -0.111 4.111 16 C -0.112 4.112 17 C -0.092 4.092 18 H 0.083 0.917 19 C 0.166 3.834 20 N -0.750 5.750 21 C -0.338 4.338 22 H 0.061 0.939 23 C -0.101 4.101 24 N -0.972 5.972 25 Si 1.126 2.874 26 H -0.290 1.290 27 H -0.278 1.278 28 H -0.280 1.280 29 C 0.191 3.809 30 N -0.523 5.523 31 H 0.049 0.951 32 H 0.089 0.911 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.080 0.920 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.090 0.910 39 H 0.045 0.955 40 H 0.186 0.814 41 H 0.411 0.589 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.079 0.921 46 H 0.053 0.947 47 H 0.064 0.936 48 H 0.007 0.993 49 H 0.017 0.983 50 H 0.364 0.636 51 H 0.246 0.754 52 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.449 5.235 -14.413 28.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.010 4.010 3 C -0.182 4.182 4 C -0.191 4.191 5 C 0.073 3.927 6 N -0.237 5.237 7 C 0.038 3.962 8 C -0.260 4.260 9 C 0.359 3.641 10 O -0.445 6.445 11 N -0.352 5.352 12 C 0.049 3.951 13 H 0.092 0.908 14 C -0.162 4.162 15 C -0.148 4.148 16 C -0.150 4.150 17 C -0.111 4.111 18 H 0.101 0.899 19 C 0.040 3.960 20 N -0.395 5.395 21 C -0.469 4.469 22 H 0.079 0.921 23 C -0.293 4.293 24 N -0.619 5.619 25 Si 0.951 3.049 26 H -0.216 1.216 27 H -0.204 1.204 28 H -0.206 1.206 29 C 0.024 3.976 30 N -0.236 5.236 31 H 0.068 0.932 32 H 0.108 0.892 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.099 0.901 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.109 0.891 39 H 0.064 0.936 40 H 0.203 0.797 41 H 0.249 0.751 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.100 0.900 45 H 0.098 0.902 46 H 0.072 0.928 47 H 0.082 0.918 48 H 0.025 0.975 49 H 0.035 0.965 50 H 0.196 0.804 51 H 0.056 0.944 52 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -23.371 4.718 -14.803 28.064 hybrid contribution -0.775 -0.192 0.697 1.060 sum -24.147 4.526 -14.106 28.329 Atomic orbital electron populations 1.21824 0.91222 1.02799 1.03069 1.19675 0.97232 0.95520 0.88536 1.21700 1.01197 0.92653 1.02659 1.21838 1.00521 1.00807 0.95938 1.23979 0.87103 0.87015 0.94588 1.68380 1.24213 1.09737 1.21384 1.23680 0.86333 1.00492 0.85694 1.21649 1.06725 0.98090 0.99576 1.17926 0.78201 0.85720 0.82225 1.90787 1.58954 1.17584 1.77216 1.45927 1.50833 1.16019 1.22417 1.21488 0.92606 0.96525 0.84493 0.90774 1.22692 0.97951 0.99569 0.96013 1.22477 0.93399 0.98155 1.00793 1.22322 0.97059 1.00801 0.94790 1.22088 0.92832 0.97859 0.98351 0.89864 1.20773 0.85081 0.94115 0.96069 1.42460 1.04652 1.07694 1.84725 1.20359 0.89388 0.93705 1.43480 0.92109 1.27172 1.04301 0.97976 0.99832 1.70996 1.29029 1.07367 1.54553 0.82646 0.71950 0.73363 0.76954 1.21611 1.20446 1.20601 1.23943 0.90926 0.90115 0.92633 1.68421 1.12096 1.39211 1.03853 0.93168 0.89199 0.92131 0.92872 0.90123 0.92480 0.92135 0.89136 0.93555 0.79687 0.75071 0.90719 0.90704 0.89957 0.90230 0.92778 0.91764 0.97468 0.96457 0.80351 0.94391 0.78484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.53 8.37 71.98 0.60 -0.92 16 2 C -0.01 -0.11 0.92 -52.93 -0.05 -0.16 16 3 C -0.12 -1.55 7.66 71.98 0.55 -1.00 16 4 C -0.13 -1.68 8.37 71.98 0.60 -1.08 16 5 C 0.34 6.56 6.25 138.70 0.87 7.43 16 6 N -0.52 -10.85 9.77 -186.81 -1.83 -12.68 16 7 C 0.20 4.25 10.88 85.06 0.93 5.17 16 8 C -0.25 -5.10 5.91 -19.91 -0.12 -5.22 16 9 C 0.57 13.66 7.78 86.78 0.68 14.33 16 10 O -0.57 -17.48 16.10 -3.89 -0.06 -17.55 16 11 N -0.70 -14.56 4.99 -441.99 -2.20 -16.77 16 12 C 0.15 3.87 2.90 45.71 0.13 4.00 16 13 H 0.07 2.25 7.09 -2.38 -0.02 2.23 16 14 C -0.12 -2.65 6.54 31.67 0.21 -2.44 16 15 C -0.11 -2.17 6.91 31.89 0.22 -1.95 16 16 C -0.11 -3.02 6.08 31.67 0.19 -2.83 16 17 C -0.09 -2.67 2.73 -10.07 -0.03 -2.70 16 18 H 0.08 2.33 7.62 -2.39 -0.02 2.31 16 19 C 0.17 6.70 5.31 86.38 0.46 7.16 16 20 N -0.75 -37.72 5.45 -343.47 -1.87 -39.59 16 21 C -0.34 -19.30 9.99 84.03 0.84 -18.46 16 22 H 0.06 3.44 7.83 -2.91 -0.02 3.42 16 23 C -0.10 -5.90 5.50 84.86 0.47 -5.44 16 24 N -0.97 -60.30 13.70 21.65 0.30 -60.00 16 25 Si 1.13 52.25 29.92 68.60 2.05 54.30 16 26 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 27 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 28 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 29 C 0.19 3.28 10.81 85.06 0.92 4.20 16 30 N -0.52 -10.11 8.98 -186.80 -1.68 -11.78 16 31 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 32 H 0.09 0.65 8.14 -2.39 -0.02 0.64 16 33 H 0.06 0.81 8.01 -2.38 -0.02 0.79 16 34 H 0.05 0.78 8.04 -2.39 -0.02 0.76 16 35 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.06 0.78 8.04 -2.39 -0.02 0.76 16 37 H 0.06 0.87 8.01 -2.39 -0.02 0.85 16 38 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.19 3.54 7.74 -2.91 -0.02 3.51 16 41 H 0.41 6.25 6.46 -92.71 -0.60 5.65 16 42 H 0.07 1.51 8.04 -2.39 -0.02 1.49 16 43 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.05 1.69 7.76 -2.39 -0.02 1.67 16 47 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 48 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 49 H 0.02 0.73 8.00 -2.39 -0.02 0.71 16 50 H 0.36 18.51 6.38 -92.71 -0.59 17.92 16 51 H 0.25 15.04 6.77 -92.71 -0.63 14.41 16 52 H 0.20 2.11 6.54 -2.91 -0.02 2.09 16 Total: -1.00 -73.54 416.87 2.05 -71.49 By element: Atomic # 1 Polarization: 32.61 SS G_CDS: -0.12 Total: 32.49 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: 7.47 Total: 0.09 kcal Atomic # 7 Polarization: -133.55 SS G_CDS: -7.28 Total: -140.83 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -0.06 Total: -17.55 kcal Atomic # 14 Polarization: 52.25 SS G_CDS: 2.05 Total: 54.30 kcal Total: -73.54 2.05 -71.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715575851.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.092 kcal (2) G-P(sol) polarization free energy of solvation -73.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds