Wall clock time and date at job start Wed Apr 1 2020 05:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36932 * 120.00048 * 2 1 4 4 H 1.08000 * 120.00227 * 136.84083 * 3 2 1 5 5 C 1.38809 * 120.00378 * 316.83941 * 3 2 1 6 6 N 1.31626 * 119.99616 * 355.95929 * 5 3 2 7 7 Si 1.86803 * 120.00466 * 175.95883 * 5 3 2 8 8 H 1.48504 * 109.46929 * 0.02562 * 7 5 3 9 9 H 1.48494 * 109.46963 * 119.99963 * 7 5 3 10 10 H 1.48498 * 109.47100 * 240.00318 * 7 5 3 11 11 C 1.46497 * 119.99771 * 179.97438 * 2 1 3 12 12 C 1.53006 * 109.46964 * 283.06117 * 11 2 1 13 13 H 1.08994 * 109.87006 * 62.23833 * 12 11 2 14 14 C 1.54329 * 110.00684 * 183.33433 * 12 11 2 15 15 C 1.55151 * 102.93981 * 141.68572 * 14 12 11 16 16 C 1.55130 * 101.48780 * 324.32963 * 15 14 12 17 17 N 1.47019 * 109.88397 * 301.21780 * 12 11 2 18 18 C 1.34776 * 125.64576 * 61.45138 * 17 12 11 19 19 O 1.21548 * 120.00233 * 6.42920 * 18 17 12 20 20 C 1.47835 * 120.00082 * 186.43218 * 18 17 12 21 21 C 1.39941 * 120.94104 * 189.63084 * 20 18 17 22 22 N 1.32143 * 118.92337 * 180.02562 * 21 20 18 23 23 C 1.31871 * 120.96889 * 359.97438 * 22 21 20 24 24 C 1.50697 * 118.95249 * 179.97438 * 23 22 21 25 25 C 1.53001 * 109.47128 * 60.00092 * 24 23 22 26 26 C 1.53001 * 109.47551 * 300.00211 * 24 23 22 27 27 C 1.52998 * 109.47114 * 180.02562 * 24 23 22 28 28 N 1.31867 * 122.09485 * 0.26391 * 23 22 21 29 29 C 1.32145 * 120.96294 * 359.47349 * 28 23 22 30 30 H 1.08996 * 109.47233 * 277.03979 * 1 2 3 31 31 H 1.09011 * 109.46851 * 37.03828 * 1 2 3 32 32 H 1.08994 * 109.46994 * 157.03524 * 1 2 3 33 33 H 0.96999 * 119.99472 * 179.97438 * 6 5 3 34 34 H 1.09001 * 109.47268 * 163.06101 * 11 2 1 35 35 H 1.08996 * 109.47220 * 43.06085 * 11 2 1 36 36 H 1.09001 * 110.71610 * 260.04705 * 14 12 11 37 37 H 1.09001 * 110.72131 * 23.13968 * 14 12 11 38 38 H 1.09003 * 111.00820 * 82.56901 * 15 14 12 39 39 H 1.08997 * 111.00510 * 206.38215 * 15 14 12 40 40 H 1.09004 * 110.49325 * 278.45732 * 16 15 14 41 41 H 1.09000 * 110.34717 * 156.06313 * 16 15 14 42 42 H 1.08003 * 120.53881 * 359.97438 * 21 20 18 43 43 H 1.09000 * 109.47630 * 300.00095 * 25 24 23 44 44 H 1.09008 * 109.47319 * 59.99941 * 25 24 23 45 45 H 1.09002 * 109.47608 * 179.97438 * 25 24 23 46 46 H 1.09002 * 109.47217 * 179.97438 * 26 24 23 47 47 H 1.09001 * 109.47194 * 300.00300 * 26 24 23 48 48 H 1.09006 * 109.46791 * 59.99831 * 26 24 23 49 49 H 1.08999 * 109.47139 * 299.99669 * 27 24 23 50 50 H 1.08996 * 109.47205 * 60.00331 * 27 24 23 51 51 H 1.09002 * 109.46968 * 180.02562 * 27 24 23 52 52 H 1.08002 * 120.53174 * 180.24086 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.0106 1.3124 0.6398 5 6 1.7374 2.2254 -0.8223 6 7 0.7380 2.0453 -1.6596 7 14 2.6009 3.8799 -0.7405 8 1 3.6840 3.8233 0.2739 9 1 3.1832 4.2004 -2.0684 10 1 1.6223 4.9308 -0.3623 11 6 2.1975 -1.2687 0.0006 12 6 2.1701 -1.8728 1.4061 13 1 1.1420 -2.0889 1.6965 14 6 3.0087 -3.1679 1.4406 15 6 3.7004 -3.0970 2.8276 16 6 3.9594 -1.5738 2.9662 17 7 2.7741 -0.9360 2.3648 18 6 2.3224 0.3029 2.6434 19 8 1.2706 0.6869 2.1705 20 6 3.1062 1.1948 3.5241 21 6 2.5693 2.4010 3.9880 22 7 3.3053 3.1680 4.7730 23 6 4.5265 2.8109 5.1194 24 6 5.3260 3.7206 6.0162 25 6 4.5884 3.9047 7.3440 26 6 5.5013 5.0806 5.3375 27 6 6.7001 3.1006 6.2772 28 7 5.0726 1.6857 4.7014 29 6 4.4059 0.8565 3.9177 30 1 -0.3633 0.1259 1.0199 31 1 -0.3633 0.8204 -0.6191 32 1 -0.3633 -0.9462 -0.4009 33 1 0.4496 2.7719 -2.2340 34 1 3.2305 -1.0920 -0.2989 35 1 1.7289 -1.9591 -0.7008 36 1 2.3656 -4.0455 1.3748 37 1 3.7465 -3.1712 0.6383 38 1 3.0370 -3.4570 3.6140 39 1 4.6380 -3.6529 2.8254 40 1 4.8603 -1.2889 2.4227 41 1 4.0463 -1.2982 4.0172 42 1 1.5701 2.7005 3.7084 43 1 3.6095 4.3466 7.1577 44 1 4.4635 2.9358 7.8276 45 1 5.1668 4.5623 7.9929 46 1 6.0792 5.7387 5.9864 47 1 6.0267 4.9496 4.3915 48 1 4.5224 5.5225 5.1512 49 1 6.5756 2.1316 6.7607 50 1 7.2254 2.9699 5.3312 51 1 7.2782 3.7584 6.9263 52 1 4.8584 -0.0651 3.5826 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717378690.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:47:26 Heat of formation + Delta-G solvation = 76.579240 kcal Electronic energy + Delta-G solvation = -32860.682023 eV Core-core repulsion = 28862.874630 eV Total energy + Delta-G solvation = -3997.807393 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 21.35 seconds Orbital eigenvalues (eV) -41.22989 -39.58875 -37.05526 -36.49324 -35.02307 -33.73138 -32.09720 -31.32246 -30.47828 -29.16338 -27.41275 -27.35692 -25.72599 -25.56301 -24.92142 -24.09721 -22.78013 -21.02395 -20.76642 -19.96995 -18.75849 -17.64537 -16.90656 -16.49858 -16.42684 -15.91558 -15.13850 -14.84057 -14.74981 -14.45853 -13.98706 -13.90368 -13.66802 -13.58172 -13.40090 -13.14014 -12.99318 -12.77310 -12.35125 -12.31019 -12.12803 -11.98548 -11.76861 -11.71090 -11.56761 -11.30933 -11.09647 -11.03460 -10.98075 -10.96276 -10.81070 -10.68811 -10.62406 -10.49758 -10.40394 -9.95455 -9.80527 -9.77431 -9.20689 -9.07244 -8.88204 -8.48374 -7.93425 -6.15971 -5.44157 -3.23430 0.74328 1.22726 3.35532 3.41704 3.47678 3.48143 3.50846 3.82123 4.12789 4.18059 4.54616 4.61912 4.69400 4.79163 4.87625 4.88889 4.91514 5.01313 5.04476 5.27644 5.40152 5.40739 5.48005 5.52749 5.55414 5.58455 5.59479 5.72130 5.77634 5.78556 5.83348 5.86967 5.91399 5.99275 6.03265 6.04661 6.13350 6.20813 6.22822 6.33492 6.34214 6.49153 6.57350 6.89435 6.99178 7.04704 7.10902 7.64192 7.85838 8.13136 8.15341 8.19999 8.78620 9.04885 9.43538 10.02053 10.62074 11.40672 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009899 B = 0.004753 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2827.827328 B = 5890.062409 C = 7897.630780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.574 5.574 3 C -0.207 4.207 4 H 0.043 0.957 5 C 0.008 3.992 6 N -0.895 5.895 7 Si 0.890 3.110 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.289 1.289 11 C 0.140 3.860 12 C 0.119 3.881 13 H 0.064 0.936 14 C -0.127 4.127 15 C -0.130 4.130 16 C 0.087 3.913 17 N -0.608 5.608 18 C 0.561 3.439 19 O -0.437 6.437 20 C -0.216 4.216 21 C 0.202 3.798 22 N -0.516 5.516 23 C 0.327 3.673 24 C 0.000 4.000 25 C -0.134 4.134 26 C -0.137 4.137 27 C -0.127 4.127 28 N -0.518 5.518 29 C 0.142 3.858 30 H 0.005 0.995 31 H 0.091 0.909 32 H -0.005 1.005 33 H 0.250 0.750 34 H 0.051 0.949 35 H 0.034 0.966 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.179 0.821 43 H 0.067 0.933 44 H 0.052 0.948 45 H 0.064 0.936 46 H 0.064 0.936 47 H 0.054 0.946 48 H 0.068 0.932 49 H 0.061 0.939 50 H 0.062 0.938 51 H 0.056 0.944 52 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.663 -5.712 15.261 18.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.295 5.295 3 C -0.338 4.338 4 H 0.061 0.939 5 C -0.190 4.190 6 N -0.540 5.540 7 Si 0.721 3.279 8 H -0.208 1.208 9 H -0.217 1.217 10 H -0.215 1.215 11 C 0.011 3.989 12 C 0.013 3.987 13 H 0.082 0.918 14 C -0.166 4.166 15 C -0.169 4.169 16 C -0.037 4.037 17 N -0.346 5.346 18 C 0.347 3.653 19 O -0.306 6.306 20 C -0.224 4.224 21 C 0.035 3.965 22 N -0.229 5.229 23 C 0.060 3.940 24 C -0.002 4.002 25 C -0.192 4.192 26 C -0.195 4.195 27 C -0.184 4.184 28 N -0.231 5.231 29 C -0.024 4.024 30 H 0.023 0.977 31 H 0.108 0.892 32 H 0.014 0.986 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.052 0.948 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.196 0.804 43 H 0.086 0.914 44 H 0.072 0.928 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.073 0.927 48 H 0.087 0.913 49 H 0.080 0.920 50 H 0.081 0.919 51 H 0.075 0.925 52 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 9.428 -4.636 15.448 18.682 hybrid contribution 0.014 0.294 -0.692 0.752 sum 9.442 -4.342 14.756 18.049 Atomic orbital electron populations 1.21294 0.83768 0.99160 0.98071 1.43406 1.01294 0.99633 1.85117 1.18728 1.09374 0.90668 1.15019 0.93897 1.25318 0.98515 0.98930 0.96218 1.69711 1.28257 1.31214 1.24853 0.86399 0.79300 0.85123 0.77088 1.20810 1.21726 1.21537 1.21202 0.96764 0.89604 0.91323 1.22482 0.96030 0.87267 0.92920 0.91795 1.22665 0.99493 0.97421 0.96995 1.22783 1.01077 0.94938 0.98064 1.22677 0.89871 0.93311 0.97802 1.48010 1.28743 1.14586 1.43254 1.17021 0.86488 0.80118 0.81716 1.90968 1.21296 1.71991 1.46354 1.22014 0.97934 0.99534 1.02896 1.23459 0.99334 0.87198 0.86500 1.68224 1.07064 1.33567 1.14054 1.23192 0.88419 0.90077 0.92356 1.19379 0.94291 0.93263 0.93256 1.21830 1.00919 1.01839 0.94658 1.21852 1.02851 0.94550 1.00262 1.21700 0.94180 1.00450 1.02101 1.68284 1.37339 1.04650 1.12832 1.24656 0.90355 0.98077 0.89286 0.97733 0.89160 0.98583 0.93946 0.93075 0.94774 0.90675 0.90572 0.90879 0.90305 0.91414 0.90791 0.80384 0.91363 0.92846 0.91717 0.91677 0.92685 0.91326 0.92032 0.91940 0.92533 0.79447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 3.16 9.64 59.85 0.58 3.73 16 2 N -0.57 -14.61 1.58 -181.12 -0.29 -14.89 16 3 C -0.21 -5.74 6.57 -15.06 -0.10 -5.84 16 4 H 0.04 1.22 6.36 -52.49 -0.33 0.88 16 5 C 0.01 0.24 5.33 -17.43 -0.09 0.15 16 6 N -0.90 -26.89 10.84 55.49 0.60 -26.29 16 7 Si 0.89 23.02 29.56 -169.99 -5.02 18.00 16 8 H -0.28 -7.30 7.11 56.52 0.40 -6.90 16 9 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 10 H -0.29 -7.52 7.11 56.52 0.40 -7.11 16 11 C 0.14 2.89 5.27 -4.04 -0.02 2.87 16 12 C 0.12 1.98 3.20 -66.95 -0.21 1.77 16 13 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 14 C -0.13 -1.49 6.48 -24.90 -0.16 -1.65 16 15 C -0.13 -1.27 7.10 -24.47 -0.17 -1.45 16 16 C 0.09 1.04 4.93 -2.41 -0.01 1.03 16 17 N -0.61 -10.21 3.06 -163.98 -0.50 -10.71 16 18 C 0.56 11.13 5.33 -12.33 -0.07 11.06 16 19 O -0.44 -10.42 10.10 5.32 0.05 -10.37 16 20 C -0.22 -3.85 5.88 -104.69 -0.62 -4.46 16 21 C 0.20 3.62 10.88 -16.78 -0.18 3.44 16 22 N -0.52 -8.69 9.77 -10.40 -0.10 -8.79 16 23 C 0.33 5.01 6.25 -157.07 -0.98 4.03 16 24 C 0.00 0.00 0.92 -155.66 -0.14 -0.14 16 25 C -0.13 -1.39 8.37 37.16 0.31 -1.08 16 26 C -0.14 -1.58 8.36 37.16 0.31 -1.27 16 27 C -0.13 -1.32 7.66 37.16 0.28 -1.03 16 28 N -0.52 -7.93 8.98 -10.39 -0.09 -8.02 16 29 C 0.14 2.18 9.57 -16.78 -0.16 2.02 16 30 H 0.00 0.12 6.37 -51.93 -0.33 -0.21 16 31 H 0.09 2.64 5.20 -51.92 -0.27 2.37 16 32 H 0.00 -0.11 7.97 -51.93 -0.41 -0.53 16 33 H 0.25 7.27 8.31 -40.82 -0.34 6.94 16 34 H 0.05 1.08 7.92 -51.93 -0.41 0.67 16 35 H 0.03 0.69 8.08 -51.93 -0.42 0.27 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.08 0.86 7.83 -51.93 -0.41 0.46 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.77 7.33 -51.93 -0.38 0.39 16 41 H 0.07 0.80 6.03 -51.93 -0.31 0.49 16 42 H 0.18 3.20 7.77 -52.48 -0.41 2.79 16 43 H 0.07 0.76 8.01 -51.93 -0.42 0.35 16 44 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.07 0.86 8.01 -51.93 -0.42 0.44 16 49 H 0.06 0.65 8.04 -51.93 -0.42 0.23 16 50 H 0.06 0.71 8.03 -51.93 -0.42 0.29 16 51 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 52 H 0.19 2.40 3.54 -52.49 -0.19 2.21 16 LS Contribution 395.01 15.07 5.95 5.95 Total: -1.00 -33.45 395.01 -9.32 -42.76 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -8.48 Total: -0.81 kcal Atomic # 6 Polarization: 14.61 SS G_CDS: -1.44 Total: 13.17 kcal Atomic # 7 Polarization: -68.33 SS G_CDS: -0.38 Total: -68.71 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.05 Total: -10.37 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.02 Total: 18.00 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.45 -9.32 -42.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717378690.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.343 kcal (2) G-P(sol) polarization free energy of solvation -33.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 21.35 seconds