Wall clock time and date at job start Wed Apr 1 2020 05:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36932 * 120.00048 * 2 1 4 4 H 1.08000 * 120.00227 * 136.84083 * 3 2 1 5 5 C 1.38809 * 120.00378 * 316.83941 * 3 2 1 6 6 N 1.31626 * 119.99616 * 355.95929 * 5 3 2 7 7 Si 1.86803 * 120.00466 * 175.95883 * 5 3 2 8 8 H 1.48504 * 109.46929 * 0.02562 * 7 5 3 9 9 H 1.48494 * 109.46963 * 119.99963 * 7 5 3 10 10 H 1.48498 * 109.47100 * 240.00318 * 7 5 3 11 11 C 1.46497 * 119.99771 * 179.97438 * 2 1 3 12 12 C 1.53006 * 109.46964 * 283.06117 * 11 2 1 13 13 H 1.08994 * 109.87006 * 62.23833 * 12 11 2 14 14 C 1.54329 * 110.00684 * 183.33433 * 12 11 2 15 15 C 1.55151 * 102.93981 * 141.68572 * 14 12 11 16 16 C 1.55130 * 101.48780 * 324.32963 * 15 14 12 17 17 N 1.47019 * 109.88397 * 301.21780 * 12 11 2 18 18 C 1.34776 * 125.64576 * 61.45138 * 17 12 11 19 19 O 1.21548 * 120.00233 * 6.42920 * 18 17 12 20 20 C 1.47835 * 120.00082 * 186.43218 * 18 17 12 21 21 C 1.39941 * 120.94104 * 189.63084 * 20 18 17 22 22 N 1.32143 * 118.92337 * 180.02562 * 21 20 18 23 23 C 1.31871 * 120.96889 * 359.97438 * 22 21 20 24 24 C 1.50697 * 118.95249 * 179.97438 * 23 22 21 25 25 C 1.53001 * 109.47128 * 60.00092 * 24 23 22 26 26 C 1.53001 * 109.47551 * 300.00211 * 24 23 22 27 27 C 1.52998 * 109.47114 * 180.02562 * 24 23 22 28 28 N 1.31867 * 122.09485 * 0.26391 * 23 22 21 29 29 C 1.32145 * 120.96294 * 359.47349 * 28 23 22 30 30 H 1.08996 * 109.47233 * 277.03979 * 1 2 3 31 31 H 1.09011 * 109.46851 * 37.03828 * 1 2 3 32 32 H 1.08994 * 109.46994 * 157.03524 * 1 2 3 33 33 H 0.96999 * 119.99472 * 179.97438 * 6 5 3 34 34 H 1.09001 * 109.47268 * 163.06101 * 11 2 1 35 35 H 1.08996 * 109.47220 * 43.06085 * 11 2 1 36 36 H 1.09001 * 110.71610 * 260.04705 * 14 12 11 37 37 H 1.09001 * 110.72131 * 23.13968 * 14 12 11 38 38 H 1.09003 * 111.00820 * 82.56901 * 15 14 12 39 39 H 1.08997 * 111.00510 * 206.38215 * 15 14 12 40 40 H 1.09004 * 110.49325 * 278.45732 * 16 15 14 41 41 H 1.09000 * 110.34717 * 156.06313 * 16 15 14 42 42 H 1.08003 * 120.53881 * 359.97438 * 21 20 18 43 43 H 1.09000 * 109.47630 * 300.00095 * 25 24 23 44 44 H 1.09008 * 109.47319 * 59.99941 * 25 24 23 45 45 H 1.09002 * 109.47608 * 179.97438 * 25 24 23 46 46 H 1.09002 * 109.47217 * 179.97438 * 26 24 23 47 47 H 1.09001 * 109.47194 * 300.00300 * 26 24 23 48 48 H 1.09006 * 109.46791 * 59.99831 * 26 24 23 49 49 H 1.08999 * 109.47139 * 299.99669 * 27 24 23 50 50 H 1.08996 * 109.47205 * 60.00331 * 27 24 23 51 51 H 1.09002 * 109.46968 * 180.02562 * 27 24 23 52 52 H 1.08002 * 120.53174 * 180.24086 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.0106 1.3124 0.6398 5 6 1.7374 2.2254 -0.8223 6 7 0.7380 2.0453 -1.6596 7 14 2.6009 3.8799 -0.7405 8 1 3.6840 3.8233 0.2739 9 1 3.1832 4.2004 -2.0684 10 1 1.6223 4.9308 -0.3623 11 6 2.1975 -1.2687 0.0006 12 6 2.1701 -1.8728 1.4061 13 1 1.1420 -2.0889 1.6965 14 6 3.0087 -3.1679 1.4406 15 6 3.7004 -3.0970 2.8276 16 6 3.9594 -1.5738 2.9662 17 7 2.7741 -0.9360 2.3648 18 6 2.3224 0.3029 2.6434 19 8 1.2706 0.6869 2.1705 20 6 3.1062 1.1948 3.5241 21 6 2.5693 2.4010 3.9880 22 7 3.3053 3.1680 4.7730 23 6 4.5265 2.8109 5.1194 24 6 5.3260 3.7206 6.0162 25 6 4.5884 3.9047 7.3440 26 6 5.5013 5.0806 5.3375 27 6 6.7001 3.1006 6.2772 28 7 5.0726 1.6857 4.7014 29 6 4.4059 0.8565 3.9177 30 1 -0.3633 0.1259 1.0199 31 1 -0.3633 0.8204 -0.6191 32 1 -0.3633 -0.9462 -0.4009 33 1 0.4496 2.7719 -2.2340 34 1 3.2305 -1.0920 -0.2989 35 1 1.7289 -1.9591 -0.7008 36 1 2.3656 -4.0455 1.3748 37 1 3.7465 -3.1712 0.6383 38 1 3.0370 -3.4570 3.6140 39 1 4.6380 -3.6529 2.8254 40 1 4.8603 -1.2889 2.4227 41 1 4.0463 -1.2982 4.0172 42 1 1.5701 2.7005 3.7084 43 1 3.6095 4.3466 7.1577 44 1 4.4635 2.9358 7.8276 45 1 5.1668 4.5623 7.9929 46 1 6.0792 5.7387 5.9864 47 1 6.0267 4.9496 4.3915 48 1 4.5224 5.5225 5.1512 49 1 6.5756 2.1316 6.7607 50 1 7.2254 2.9699 5.3312 51 1 7.2782 3.7584 6.9263 52 1 4.8584 -0.0651 3.5826 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717378690.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:47:23 Heat of formation + Delta-G solvation = 56.785116 kcal Electronic energy + Delta-G solvation = -32861.540360 eV Core-core repulsion = 28862.874630 eV Total energy + Delta-G solvation = -3998.665731 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -42.50684 -40.92696 -38.31357 -37.66561 -36.89520 -35.02747 -33.67854 -32.96510 -31.71147 -30.65823 -28.27901 -28.21947 -27.84290 -26.94396 -26.35229 -25.37617 -24.15788 -22.57592 -22.06300 -21.02453 -20.18167 -18.94900 -18.85784 -17.75573 -17.57718 -17.27769 -16.92309 -16.35415 -16.16073 -15.59915 -15.53107 -15.13241 -15.03294 -14.92451 -14.65437 -14.61403 -14.37670 -13.90191 -13.62574 -13.44414 -13.34770 -13.14785 -13.12388 -13.03056 -12.91968 -12.73865 -12.58916 -12.42524 -12.31944 -12.12071 -12.04736 -11.95596 -11.91416 -11.87654 -11.85408 -11.72308 -11.65629 -11.49511 -10.65122 -10.49674 -10.44915 -10.33279 -9.47391 -8.23097 -7.54702 -5.40913 -0.56790 -0.09118 1.30441 1.33551 1.39366 2.00230 2.16650 2.45997 2.69804 2.77240 2.96080 3.38147 3.41114 3.54745 3.66679 3.80046 3.85844 3.94557 3.97537 3.98514 4.13180 4.18314 4.31113 4.37476 4.50913 4.54834 4.61214 4.74361 4.75501 4.78655 4.85345 4.86791 4.96327 4.97474 4.98620 5.00774 5.02451 5.06518 5.14247 5.19595 5.26192 5.32010 5.34231 5.44457 5.47245 5.49549 5.61616 5.73722 5.82498 5.96336 6.61125 6.77296 6.90332 7.29496 7.56352 7.97968 8.51609 9.23929 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009899 B = 0.004753 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2827.827328 B = 5890.062409 C = 7897.630780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.135 3.865 2 N -0.586 5.586 3 C -0.187 4.187 4 H 0.035 0.965 5 C -0.048 4.048 6 N -0.928 5.928 7 Si 0.942 3.058 8 H -0.284 1.284 9 H -0.286 1.286 10 H -0.296 1.296 11 C 0.137 3.863 12 C 0.122 3.878 13 H 0.044 0.956 14 C -0.117 4.117 15 C -0.115 4.115 16 C 0.074 3.926 17 N -0.610 5.610 18 C 0.559 3.441 19 O -0.497 6.497 20 C -0.237 4.237 21 C 0.189 3.811 22 N -0.527 5.527 23 C 0.323 3.677 24 C -0.005 4.005 25 C -0.129 4.129 26 C -0.135 4.135 27 C -0.120 4.120 28 N -0.515 5.515 29 C 0.156 3.844 30 H -0.007 1.007 31 H 0.059 0.941 32 H 0.011 0.989 33 H 0.244 0.756 34 H 0.047 0.953 35 H 0.040 0.960 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.115 0.885 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.164 0.836 43 H 0.053 0.947 44 H 0.052 0.948 45 H 0.093 0.907 46 H 0.096 0.904 47 H 0.041 0.959 48 H 0.051 0.949 49 H 0.060 0.940 50 H 0.051 0.949 51 H 0.084 0.916 52 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.087 -7.483 17.494 23.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 N -0.307 5.307 3 C -0.319 4.319 4 H 0.053 0.947 5 C -0.243 4.243 6 N -0.576 5.576 7 Si 0.772 3.228 8 H -0.209 1.209 9 H -0.213 1.213 10 H -0.223 1.223 11 C 0.010 3.990 12 C 0.016 3.984 13 H 0.062 0.938 14 C -0.155 4.155 15 C -0.152 4.152 16 C -0.047 4.047 17 N -0.346 5.346 18 C 0.346 3.654 19 O -0.370 6.370 20 C -0.244 4.244 21 C 0.022 3.978 22 N -0.240 5.240 23 C 0.056 3.944 24 C -0.007 4.007 25 C -0.187 4.187 26 C -0.193 4.193 27 C -0.178 4.178 28 N -0.228 5.228 29 C -0.010 4.010 30 H 0.011 0.989 31 H 0.077 0.923 32 H 0.029 0.971 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.113 0.887 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.134 0.866 40 H 0.101 0.899 41 H 0.107 0.893 42 H 0.181 0.819 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.112 0.888 46 H 0.115 0.885 47 H 0.060 0.940 48 H 0.070 0.930 49 H 0.079 0.921 50 H 0.070 0.930 51 H 0.102 0.898 52 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 12.916 -6.462 17.714 22.855 hybrid contribution -0.996 0.773 -1.227 1.759 sum 11.920 -5.689 16.487 21.125 Atomic orbital electron populations 1.20979 0.84729 0.98555 0.96721 1.43522 1.01095 1.00817 1.85264 1.18739 1.08339 0.91669 1.13149 0.94715 1.25863 0.99712 1.01645 0.97043 1.69859 1.29884 1.31586 1.26301 0.85582 0.78099 0.82199 0.76873 1.20919 1.21269 1.22315 1.21402 0.95756 0.87654 0.94148 1.22309 0.96605 0.89343 0.90120 0.93763 1.22643 0.99286 0.94757 0.98822 1.22794 1.02724 0.93092 0.96625 1.23041 0.88275 0.94904 0.98506 1.48139 1.29879 1.13750 1.42802 1.17411 0.85916 0.81023 0.81094 1.90940 1.23626 1.73457 1.48948 1.21926 0.99134 0.99510 1.03852 1.23384 0.99301 0.87902 0.87200 1.68284 1.07890 1.33557 1.14273 1.24060 0.88042 0.90443 0.91806 1.19657 0.94952 0.92785 0.93281 1.21809 1.00472 1.02380 0.94069 1.21854 1.02268 0.94786 1.00365 1.21673 0.93049 1.00961 1.02120 1.68442 1.36843 1.04678 1.12830 1.25114 0.89078 0.98728 0.88103 0.98897 0.92309 0.97073 0.94598 0.93453 0.94161 0.88674 0.89603 0.90170 0.86625 0.89946 0.89281 0.81852 0.92799 0.92899 0.88815 0.88528 0.94005 0.92968 0.92097 0.92996 0.89763 0.76629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 7.34 9.64 127.77 1.23 8.57 16 2 N -0.59 -30.59 1.58 -726.93 -1.15 -31.74 16 3 C -0.19 -10.67 6.57 84.03 0.55 -10.12 16 4 H 0.04 2.03 6.36 -2.91 -0.02 2.01 16 5 C -0.05 -2.89 5.33 84.86 0.45 -2.44 16 6 N -0.93 -58.08 10.84 21.65 0.23 -57.85 16 7 Si 0.94 49.13 29.56 68.60 2.03 51.16 16 8 H -0.28 -14.60 7.11 99.48 0.71 -13.89 16 9 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 10 H -0.30 -15.60 7.11 99.48 0.71 -14.89 16 11 C 0.14 5.63 5.27 86.38 0.46 6.08 16 12 C 0.12 3.91 3.20 45.35 0.15 4.06 16 13 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 14 C -0.12 -2.29 6.48 31.78 0.21 -2.08 16 15 C -0.11 -1.67 7.10 32.06 0.23 -1.44 16 16 C 0.07 1.51 4.93 86.93 0.43 1.94 16 17 N -0.61 -19.76 3.06 -790.99 -2.42 -22.18 16 18 C 0.56 22.55 5.33 86.78 0.46 23.02 16 19 O -0.50 -24.85 10.10 -3.87 -0.04 -24.89 16 20 C -0.24 -8.49 5.88 -19.91 -0.12 -8.60 16 21 C 0.19 7.05 10.88 85.06 0.93 7.98 16 22 N -0.53 -17.97 9.77 -186.81 -1.83 -19.79 16 23 C 0.32 9.58 6.25 138.70 0.87 10.45 16 24 C 0.00 -0.10 0.92 -52.93 -0.05 -0.15 16 25 C -0.13 -2.37 8.37 71.98 0.60 -1.77 16 26 C -0.13 -2.86 8.36 71.98 0.60 -2.26 16 27 C -0.12 -2.13 7.66 71.98 0.55 -1.57 16 28 N -0.51 -14.84 8.98 -186.80 -1.68 -16.52 16 29 C 0.16 4.52 9.57 85.06 0.81 5.33 16 30 H -0.01 -0.39 6.37 -2.39 -0.02 -0.41 16 31 H 0.06 3.63 5.20 -2.38 -0.01 3.62 16 32 H 0.01 0.53 7.97 -2.39 -0.02 0.51 16 33 H 0.24 14.85 8.31 -92.71 -0.77 14.08 16 34 H 0.05 1.95 7.92 -2.39 -0.02 1.93 16 35 H 0.04 1.59 8.08 -2.39 -0.02 1.57 16 36 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.09 1.58 7.83 -2.39 -0.02 1.56 16 38 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.08 1.51 7.33 -2.39 -0.02 1.50 16 41 H 0.09 1.59 6.03 -2.39 -0.01 1.58 16 42 H 0.16 6.43 7.77 -2.91 -0.02 6.40 16 43 H 0.05 1.15 8.01 -2.39 -0.02 1.13 16 44 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 45 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.05 1.27 8.01 -2.38 -0.02 1.25 16 49 H 0.06 1.09 8.04 -2.39 -0.02 1.07 16 50 H 0.05 1.03 8.03 -2.39 -0.02 1.01 16 51 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 52 H 0.22 4.83 3.54 -2.91 -0.01 4.82 16 Total: -1.00 -77.53 395.01 4.42 -73.11 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 0.91 Total: 11.71 kcal Atomic # 6 Polarization: 28.63 SS G_CDS: 8.36 Total: 36.99 kcal Atomic # 7 Polarization: -141.24 SS G_CDS: -6.84 Total: -148.08 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -0.04 Total: -24.89 kcal Atomic # 14 Polarization: 49.13 SS G_CDS: 2.03 Total: 51.16 kcal Total: -77.53 4.42 -73.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717378690.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.900 kcal (2) G-P(sol) polarization free energy of solvation -77.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds