Wall clock time and date at job start Wed Apr 1 2020 05:47:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46503 * 1
3 3 C 1.36932 * 120.00048 * 2 1
4 4 H 1.08000 * 120.00227 * 136.84083 * 3 2 1
5 5 C 1.38809 * 120.00378 * 316.83941 * 3 2 1
6 6 N 1.31626 * 119.99616 * 355.95929 * 5 3 2
7 7 Si 1.86803 * 120.00466 * 175.95883 * 5 3 2
8 8 H 1.48504 * 109.46929 * 0.02562 * 7 5 3
9 9 H 1.48494 * 109.46963 * 119.99963 * 7 5 3
10 10 H 1.48498 * 109.47100 * 240.00318 * 7 5 3
11 11 C 1.46497 * 119.99771 * 179.97438 * 2 1 3
12 12 C 1.53006 * 109.46964 * 283.06117 * 11 2 1
13 13 H 1.08994 * 109.87006 * 62.23833 * 12 11 2
14 14 C 1.54329 * 110.00684 * 183.33433 * 12 11 2
15 15 C 1.55151 * 102.93981 * 141.68572 * 14 12 11
16 16 C 1.55130 * 101.48780 * 324.32963 * 15 14 12
17 17 N 1.47019 * 109.88397 * 301.21780 * 12 11 2
18 18 C 1.34776 * 125.64576 * 61.45138 * 17 12 11
19 19 O 1.21548 * 120.00233 * 6.42920 * 18 17 12
20 20 C 1.47835 * 120.00082 * 186.43218 * 18 17 12
21 21 C 1.39941 * 120.94104 * 189.63084 * 20 18 17
22 22 N 1.32143 * 118.92337 * 180.02562 * 21 20 18
23 23 C 1.31871 * 120.96889 * 359.97438 * 22 21 20
24 24 C 1.50697 * 118.95249 * 179.97438 * 23 22 21
25 25 C 1.53001 * 109.47128 * 60.00092 * 24 23 22
26 26 C 1.53001 * 109.47551 * 300.00211 * 24 23 22
27 27 C 1.52998 * 109.47114 * 180.02562 * 24 23 22
28 28 N 1.31867 * 122.09485 * 0.26391 * 23 22 21
29 29 C 1.32145 * 120.96294 * 359.47349 * 28 23 22
30 30 H 1.08996 * 109.47233 * 277.03979 * 1 2 3
31 31 H 1.09011 * 109.46851 * 37.03828 * 1 2 3
32 32 H 1.08994 * 109.46994 * 157.03524 * 1 2 3
33 33 H 0.96999 * 119.99472 * 179.97438 * 6 5 3
34 34 H 1.09001 * 109.47268 * 163.06101 * 11 2 1
35 35 H 1.08996 * 109.47220 * 43.06085 * 11 2 1
36 36 H 1.09001 * 110.71610 * 260.04705 * 14 12 11
37 37 H 1.09001 * 110.72131 * 23.13968 * 14 12 11
38 38 H 1.09003 * 111.00820 * 82.56901 * 15 14 12
39 39 H 1.08997 * 111.00510 * 206.38215 * 15 14 12
40 40 H 1.09004 * 110.49325 * 278.45732 * 16 15 14
41 41 H 1.09000 * 110.34717 * 156.06313 * 16 15 14
42 42 H 1.08003 * 120.53881 * 359.97438 * 21 20 18
43 43 H 1.09000 * 109.47630 * 300.00095 * 25 24 23
44 44 H 1.09008 * 109.47319 * 59.99941 * 25 24 23
45 45 H 1.09002 * 109.47608 * 179.97438 * 25 24 23
46 46 H 1.09002 * 109.47217 * 179.97438 * 26 24 23
47 47 H 1.09001 * 109.47194 * 300.00300 * 26 24 23
48 48 H 1.09006 * 109.46791 * 59.99831 * 26 24 23
49 49 H 1.08999 * 109.47139 * 299.99669 * 27 24 23
50 50 H 1.08996 * 109.47205 * 60.00331 * 27 24 23
51 51 H 1.09002 * 109.46968 * 180.02562 * 27 24 23
52 52 H 1.08002 * 120.53174 * 180.24086 * 29 28 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1497 1.1859 0.0000
4 1 3.0106 1.3124 0.6398
5 6 1.7374 2.2254 -0.8223
6 7 0.7380 2.0453 -1.6596
7 14 2.6009 3.8799 -0.7405
8 1 3.6840 3.8233 0.2739
9 1 3.1832 4.2004 -2.0684
10 1 1.6223 4.9308 -0.3623
11 6 2.1975 -1.2687 0.0006
12 6 2.1701 -1.8728 1.4061
13 1 1.1420 -2.0889 1.6965
14 6 3.0087 -3.1679 1.4406
15 6 3.7004 -3.0970 2.8276
16 6 3.9594 -1.5738 2.9662
17 7 2.7741 -0.9360 2.3648
18 6 2.3224 0.3029 2.6434
19 8 1.2706 0.6869 2.1705
20 6 3.1062 1.1948 3.5241
21 6 2.5693 2.4010 3.9880
22 7 3.3053 3.1680 4.7730
23 6 4.5265 2.8109 5.1194
24 6 5.3260 3.7206 6.0162
25 6 4.5884 3.9047 7.3440
26 6 5.5013 5.0806 5.3375
27 6 6.7001 3.1006 6.2772
28 7 5.0726 1.6857 4.7014
29 6 4.4059 0.8565 3.9177
30 1 -0.3633 0.1259 1.0199
31 1 -0.3633 0.8204 -0.6191
32 1 -0.3633 -0.9462 -0.4009
33 1 0.4496 2.7719 -2.2340
34 1 3.2305 -1.0920 -0.2989
35 1 1.7289 -1.9591 -0.7008
36 1 2.3656 -4.0455 1.3748
37 1 3.7465 -3.1712 0.6383
38 1 3.0370 -3.4570 3.6140
39 1 4.6380 -3.6529 2.8254
40 1 4.8603 -1.2889 2.4227
41 1 4.0463 -1.2982 4.0172
42 1 1.5701 2.7005 3.7084
43 1 3.6095 4.3466 7.1577
44 1 4.4635 2.9358 7.8276
45 1 5.1668 4.5623 7.9929
46 1 6.0792 5.7387 5.9864
47 1 6.0267 4.9496 4.3915
48 1 4.5224 5.5225 5.1512
49 1 6.5756 2.1316 6.7607
50 1 7.2254 2.9699 5.3312
51 1 7.2782 3.7584 6.9263
52 1 4.8584 -0.0651 3.5826
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001717378690.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:47:23
Heat of formation + Delta-G solvation = 56.785116 kcal
Electronic energy + Delta-G solvation = -32861.540360 eV
Core-core repulsion = 28862.874630 eV
Total energy + Delta-G solvation = -3998.665731 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 346.211 amu
Computer time = 1.45 seconds
Orbital eigenvalues (eV)
-42.50684 -40.92696 -38.31357 -37.66561 -36.89520 -35.02747 -33.67854 -32.96510
-31.71147 -30.65823 -28.27901 -28.21947 -27.84290 -26.94396 -26.35229 -25.37617
-24.15788 -22.57592 -22.06300 -21.02453 -20.18167 -18.94900 -18.85784 -17.75573
-17.57718 -17.27769 -16.92309 -16.35415 -16.16073 -15.59915 -15.53107 -15.13241
-15.03294 -14.92451 -14.65437 -14.61403 -14.37670 -13.90191 -13.62574 -13.44414
-13.34770 -13.14785 -13.12388 -13.03056 -12.91968 -12.73865 -12.58916 -12.42524
-12.31944 -12.12071 -12.04736 -11.95596 -11.91416 -11.87654 -11.85408 -11.72308
-11.65629 -11.49511 -10.65122 -10.49674 -10.44915 -10.33279 -9.47391 -8.23097
-7.54702 -5.40913 -0.56790 -0.09118 1.30441 1.33551 1.39366 2.00230
2.16650 2.45997 2.69804 2.77240 2.96080 3.38147 3.41114 3.54745
3.66679 3.80046 3.85844 3.94557 3.97537 3.98514 4.13180 4.18314
4.31113 4.37476 4.50913 4.54834 4.61214 4.74361 4.75501 4.78655
4.85345 4.86791 4.96327 4.97474 4.98620 5.00774 5.02451 5.06518
5.14247 5.19595 5.26192 5.32010 5.34231 5.44457 5.47245 5.49549
5.61616 5.73722 5.82498 5.96336 6.61125 6.77296 6.90332 7.29496
7.56352 7.97968 8.51609 9.23929
Molecular weight = 346.21amu
Principal moments of inertia in cm(-1)
A = 0.009899 B = 0.004753 C = 0.003545
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2827.827328 B = 5890.062409 C = 7897.630780
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.135 3.865
2 N -0.586 5.586
3 C -0.187 4.187
4 H 0.035 0.965
5 C -0.048 4.048
6 N -0.928 5.928
7 Si 0.942 3.058
8 H -0.284 1.284
9 H -0.286 1.286
10 H -0.296 1.296
11 C 0.137 3.863
12 C 0.122 3.878
13 H 0.044 0.956
14 C -0.117 4.117
15 C -0.115 4.115
16 C 0.074 3.926
17 N -0.610 5.610
18 C 0.559 3.441
19 O -0.497 6.497
20 C -0.237 4.237
21 C 0.189 3.811
22 N -0.527 5.527
23 C 0.323 3.677
24 C -0.005 4.005
25 C -0.129 4.129
26 C -0.135 4.135
27 C -0.120 4.120
28 N -0.515 5.515
29 C 0.156 3.844
30 H -0.007 1.007
31 H 0.059 0.941
32 H 0.011 0.989
33 H 0.244 0.756
34 H 0.047 0.953
35 H 0.040 0.960
36 H 0.095 0.905
37 H 0.085 0.915
38 H 0.080 0.920
39 H 0.115 0.885
40 H 0.083 0.917
41 H 0.089 0.911
42 H 0.164 0.836
43 H 0.053 0.947
44 H 0.052 0.948
45 H 0.093 0.907
46 H 0.096 0.904
47 H 0.041 0.959
48 H 0.051 0.949
49 H 0.060 0.940
50 H 0.051 0.949
51 H 0.084 0.916
52 H 0.218 0.782
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.087 -7.483 17.494 23.094
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.010 4.010
2 N -0.307 5.307
3 C -0.319 4.319
4 H 0.053 0.947
5 C -0.243 4.243
6 N -0.576 5.576
7 Si 0.772 3.228
8 H -0.209 1.209
9 H -0.213 1.213
10 H -0.223 1.223
11 C 0.010 3.990
12 C 0.016 3.984
13 H 0.062 0.938
14 C -0.155 4.155
15 C -0.152 4.152
16 C -0.047 4.047
17 N -0.346 5.346
18 C 0.346 3.654
19 O -0.370 6.370
20 C -0.244 4.244
21 C 0.022 3.978
22 N -0.240 5.240
23 C 0.056 3.944
24 C -0.007 4.007
25 C -0.187 4.187
26 C -0.193 4.193
27 C -0.178 4.178
28 N -0.228 5.228
29 C -0.010 4.010
30 H 0.011 0.989
31 H 0.077 0.923
32 H 0.029 0.971
33 H 0.054 0.946
34 H 0.065 0.935
35 H 0.058 0.942
36 H 0.113 0.887
37 H 0.104 0.896
38 H 0.098 0.902
39 H 0.134 0.866
40 H 0.101 0.899
41 H 0.107 0.893
42 H 0.181 0.819
43 H 0.072 0.928
44 H 0.071 0.929
45 H 0.112 0.888
46 H 0.115 0.885
47 H 0.060 0.940
48 H 0.070 0.930
49 H 0.079 0.921
50 H 0.070 0.930
51 H 0.102 0.898
52 H 0.234 0.766
Dipole moment (debyes) X Y Z Total
from point charges 12.916 -6.462 17.714 22.855
hybrid contribution -0.996 0.773 -1.227 1.759
sum 11.920 -5.689 16.487 21.125
Atomic orbital electron populations
1.20979 0.84729 0.98555 0.96721 1.43522 1.01095 1.00817 1.85264
1.18739 1.08339 0.91669 1.13149 0.94715 1.25863 0.99712 1.01645
0.97043 1.69859 1.29884 1.31586 1.26301 0.85582 0.78099 0.82199
0.76873 1.20919 1.21269 1.22315 1.21402 0.95756 0.87654 0.94148
1.22309 0.96605 0.89343 0.90120 0.93763 1.22643 0.99286 0.94757
0.98822 1.22794 1.02724 0.93092 0.96625 1.23041 0.88275 0.94904
0.98506 1.48139 1.29879 1.13750 1.42802 1.17411 0.85916 0.81023
0.81094 1.90940 1.23626 1.73457 1.48948 1.21926 0.99134 0.99510
1.03852 1.23384 0.99301 0.87902 0.87200 1.68284 1.07890 1.33557
1.14273 1.24060 0.88042 0.90443 0.91806 1.19657 0.94952 0.92785
0.93281 1.21809 1.00472 1.02380 0.94069 1.21854 1.02268 0.94786
1.00365 1.21673 0.93049 1.00961 1.02120 1.68442 1.36843 1.04678
1.12830 1.25114 0.89078 0.98728 0.88103 0.98897 0.92309 0.97073
0.94598 0.93453 0.94161 0.88674 0.89603 0.90170 0.86625 0.89946
0.89281 0.81852 0.92799 0.92899 0.88815 0.88528 0.94005 0.92968
0.92097 0.92996 0.89763 0.76629
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.14 7.34 9.64 127.77 1.23 8.57 16
2 N -0.59 -30.59 1.58 -726.93 -1.15 -31.74 16
3 C -0.19 -10.67 6.57 84.03 0.55 -10.12 16
4 H 0.04 2.03 6.36 -2.91 -0.02 2.01 16
5 C -0.05 -2.89 5.33 84.86 0.45 -2.44 16
6 N -0.93 -58.08 10.84 21.65 0.23 -57.85 16
7 Si 0.94 49.13 29.56 68.60 2.03 51.16 16
8 H -0.28 -14.60 7.11 99.48 0.71 -13.89 16
9 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16
10 H -0.30 -15.60 7.11 99.48 0.71 -14.89 16
11 C 0.14 5.63 5.27 86.38 0.46 6.08 16
12 C 0.12 3.91 3.20 45.35 0.15 4.06 16
13 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16
14 C -0.12 -2.29 6.48 31.78 0.21 -2.08 16
15 C -0.11 -1.67 7.10 32.06 0.23 -1.44 16
16 C 0.07 1.51 4.93 86.93 0.43 1.94 16
17 N -0.61 -19.76 3.06 -790.99 -2.42 -22.18 16
18 C 0.56 22.55 5.33 86.78 0.46 23.02 16
19 O -0.50 -24.85 10.10 -3.87 -0.04 -24.89 16
20 C -0.24 -8.49 5.88 -19.91 -0.12 -8.60 16
21 C 0.19 7.05 10.88 85.06 0.93 7.98 16
22 N -0.53 -17.97 9.77 -186.81 -1.83 -19.79 16
23 C 0.32 9.58 6.25 138.70 0.87 10.45 16
24 C 0.00 -0.10 0.92 -52.93 -0.05 -0.15 16
25 C -0.13 -2.37 8.37 71.98 0.60 -1.77 16
26 C -0.13 -2.86 8.36 71.98 0.60 -2.26 16
27 C -0.12 -2.13 7.66 71.98 0.55 -1.57 16
28 N -0.51 -14.84 8.98 -186.80 -1.68 -16.52 16
29 C 0.16 4.52 9.57 85.06 0.81 5.33 16
30 H -0.01 -0.39 6.37 -2.39 -0.02 -0.41 16
31 H 0.06 3.63 5.20 -2.38 -0.01 3.62 16
32 H 0.01 0.53 7.97 -2.39 -0.02 0.51 16
33 H 0.24 14.85 8.31 -92.71 -0.77 14.08 16
34 H 0.05 1.95 7.92 -2.39 -0.02 1.93 16
35 H 0.04 1.59 8.08 -2.39 -0.02 1.57 16
36 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16
37 H 0.09 1.58 7.83 -2.39 -0.02 1.56 16
38 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16
39 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16
40 H 0.08 1.51 7.33 -2.39 -0.02 1.50 16
41 H 0.09 1.59 6.03 -2.39 -0.01 1.58 16
42 H 0.16 6.43 7.77 -2.91 -0.02 6.40 16
43 H 0.05 1.15 8.01 -2.39 -0.02 1.13 16
44 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16
45 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16
46 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16
47 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16
48 H 0.05 1.27 8.01 -2.38 -0.02 1.25 16
49 H 0.06 1.09 8.04 -2.39 -0.02 1.07 16
50 H 0.05 1.03 8.03 -2.39 -0.02 1.01 16
51 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16
52 H 0.22 4.83 3.54 -2.91 -0.01 4.82 16
Total: -1.00 -77.53 395.01 4.42 -73.11
By element:
Atomic # 1 Polarization: 10.79 SS G_CDS: 0.91 Total: 11.71 kcal
Atomic # 6 Polarization: 28.63 SS G_CDS: 8.36 Total: 36.99 kcal
Atomic # 7 Polarization: -141.24 SS G_CDS: -6.84 Total: -148.08 kcal
Atomic # 8 Polarization: -24.85 SS G_CDS: -0.04 Total: -24.89 kcal
Atomic # 14 Polarization: 49.13 SS G_CDS: 2.03 Total: 51.16 kcal
Total: -77.53 4.42 -73.11 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001717378690.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 129.900 kcal
(2) G-P(sol) polarization free energy of solvation -77.535 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.365 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.420 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.115 kcal
(6) G-S(sol) free energy of system = (1) + (5) 56.785 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.45 seconds