Wall clock time and date at job start Wed Apr 1 2020 05:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46939 * 2 1 4 4 C 1.52999 * 109.46875 * 240.00594 * 2 1 3 5 5 C 1.50695 * 109.47199 * 120.00057 * 2 1 3 6 6 N 1.31872 * 118.95216 * 60.00078 * 5 2 1 7 7 C 1.32139 * 120.96629 * 179.97438 * 6 5 2 8 8 C 1.39950 * 118.93083 * 0.25126 * 7 6 5 9 9 C 1.47821 * 120.94541 * 179.72845 * 8 7 6 10 10 O 1.21561 * 119.99866 * 39.88562 * 9 8 7 11 11 N 1.34783 * 120.00437 * 219.88097 * 9 8 7 12 12 C 1.46923 * 120.62391 * 5.82111 * 11 9 8 13 13 C 1.53196 * 108.77256 * 126.36577 * 12 11 9 14 14 C 1.53045 * 109.31243 * 54.63749 * 13 12 11 15 15 C 1.53047 * 109.53402 * 298.63107 * 14 13 12 16 16 H 1.09005 * 109.49449 * 301.41489 * 15 14 13 17 17 C 1.52994 * 109.49872 * 181.35205 * 15 14 13 18 18 N 1.46500 * 109.47457 * 175.00022 * 17 15 14 19 19 C 1.36935 * 119.99872 * 179.97438 * 18 17 15 20 20 H 1.07995 * 120.00316 * 0.02562 * 19 18 17 21 21 C 1.38822 * 119.99344 * 179.97438 * 19 18 17 22 22 N 1.31611 * 120.00102 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99510 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46969 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46609 * 120.00062 * 23 21 19 26 26 H 1.48497 * 109.47011 * 240.00134 * 23 21 19 27 27 C 1.46922 * 120.63087 * 185.53575 * 11 9 8 28 28 C 1.39953 * 118.11365 * 359.49142 * 8 7 6 29 29 N 1.31870 * 118.95414 * 239.97860 * 5 2 1 30 30 H 1.09003 * 109.47133 * 300.00115 * 1 2 3 31 31 H 1.08998 * 109.47398 * 59.99347 * 1 2 3 32 32 H 1.08995 * 109.47175 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46555 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47109 * 299.99980 * 3 2 1 35 35 H 1.08996 * 109.47011 * 60.00289 * 3 2 1 36 36 H 1.09009 * 109.46493 * 299.99450 * 4 2 1 37 37 H 1.08993 * 109.47504 * 59.99735 * 4 2 1 38 38 H 1.09001 * 109.47271 * 180.02562 * 4 2 1 39 39 H 1.08011 * 120.53885 * 179.97438 * 7 6 5 40 40 H 1.08997 * 109.58423 * 246.14814 * 12 11 9 41 41 H 1.08999 * 109.59098 * 6.44065 * 12 11 9 42 42 H 1.09007 * 109.49590 * 174.58082 * 13 12 11 43 43 H 1.08996 * 109.50328 * 294.64895 * 13 12 11 44 44 H 1.08992 * 109.46405 * 58.65217 * 14 13 12 45 45 H 1.08996 * 109.45771 * 178.62893 * 14 13 12 46 46 H 1.09001 * 109.47063 * 294.99905 * 17 15 14 47 47 H 1.09003 * 109.47285 * 54.99976 * 17 15 14 48 48 H 0.97001 * 119.99316 * 0.02562 * 18 17 15 49 49 H 0.97001 * 119.99928 * 179.97438 * 22 21 19 50 50 H 1.08995 * 109.58942 * 353.42392 * 27 11 9 51 51 H 1.09001 * 109.58505 * 113.84908 * 27 11 9 52 52 H 1.08001 * 120.53541 * 180.24217 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 2.0323 -0.7104 1.2304 6 7 1.7012 -1.9729 1.4185 7 6 2.1199 -2.6343 2.4831 8 6 2.9217 -1.9719 3.4196 9 6 3.4098 -2.6671 4.6293 10 8 3.7835 -3.8217 4.5577 11 7 3.4407 -2.0210 5.8118 12 6 2.8757 -0.6710 5.9419 13 6 1.8683 -0.6673 7.0961 14 6 2.5491 -1.1886 8.3638 15 6 3.0191 -2.6275 8.1374 16 1 2.1649 -3.2524 7.8766 17 6 3.6694 -3.1594 9.4161 18 7 4.0113 -4.5728 9.2386 19 6 4.6084 -5.2659 10.2575 20 1 4.8269 -4.7708 11.1921 21 6 4.9318 -6.6055 10.0895 22 7 4.6650 -7.2090 8.9507 23 14 5.7469 -7.5509 11.4792 24 1 5.9384 -6.6506 12.6446 25 1 4.8841 -8.6934 11.8733 26 1 7.0657 -8.0602 11.0245 27 6 4.0344 -2.6557 6.9964 28 6 3.2524 -0.6341 3.1757 29 7 2.7894 -0.0499 2.0845 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7489 -1.2493 37 1 1.6766 -0.2073 -2.1392 38 1 3.1299 -0.7216 -1.2492 39 1 1.8442 -3.6682 2.6305 40 1 3.6742 0.0406 6.1516 41 1 2.3734 -0.3941 5.0150 42 1 1.5132 0.3492 7.2658 43 1 1.0248 -1.3102 6.8449 44 1 3.4070 -0.5594 8.6003 45 1 1.8413 -1.1641 9.1923 46 1 4.5749 -2.5903 9.6270 47 1 2.9730 -3.0557 10.2482 48 1 3.8153 -5.0174 8.3990 49 1 4.8913 -8.1449 8.8332 50 1 4.2943 -3.6887 6.7658 51 1 4.9293 -2.1091 7.2938 52 1 3.8720 -0.0866 3.8705 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731528872.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:48:05 Heat of formation + Delta-G solvation = 16.424604 kcal Electronic energy + Delta-G solvation = -30738.964455 eV Core-core repulsion = 26738.548561 eV Total energy + Delta-G solvation = -4000.415894 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 20.61 seconds Orbital eigenvalues (eV) -41.77302 -40.04175 -37.75029 -36.97761 -35.08274 -34.17153 -33.08770 -31.90370 -31.61894 -29.72512 -27.70891 -27.64004 -26.39055 -25.69919 -24.69078 -24.45547 -23.16776 -21.56092 -20.68765 -20.26212 -19.43802 -18.19118 -17.29237 -16.98142 -16.89907 -16.16090 -15.46704 -15.13970 -14.91028 -14.74142 -14.58403 -14.31230 -14.27244 -13.96455 -13.86805 -13.68243 -13.53640 -13.05612 -12.96188 -12.66331 -12.58351 -12.53618 -12.42133 -12.12048 -11.98430 -11.63670 -11.43969 -11.35941 -11.26898 -11.21095 -11.11384 -11.00502 -10.85749 -10.69977 -10.41843 -10.34965 -10.03555 -9.92702 -9.67218 -9.58934 -9.56548 -8.86733 -8.63181 -6.89458 -5.71922 -3.01845 0.22306 0.70950 2.57786 2.84481 3.35608 3.42287 3.45720 3.50649 3.53498 3.71638 4.12981 4.24275 4.49967 4.56084 4.58015 4.58596 4.63872 4.67386 4.79870 4.91396 5.00568 5.13570 5.22868 5.26327 5.28212 5.32071 5.42733 5.45720 5.51604 5.56828 5.56961 5.60441 5.61162 5.72373 5.75114 5.77942 5.88844 5.91858 6.00616 6.03846 6.04986 6.07553 6.16417 6.34298 6.48112 6.50998 6.58830 6.74306 6.84793 7.31077 7.68999 7.73296 8.05800 8.45679 9.56862 10.14380 10.48504 11.50386 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020454 B = 0.002185 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.582278 B =12811.729197 C =13719.802760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.002 4.002 3 C -0.129 4.129 4 C -0.137 4.137 5 C 0.340 3.660 6 N -0.512 5.512 7 C 0.203 3.797 8 C -0.236 4.236 9 C 0.563 3.437 10 O -0.514 6.514 11 N -0.603 5.603 12 C 0.098 3.902 13 C -0.133 4.133 14 C -0.112 4.112 15 C -0.108 4.108 16 H 0.074 0.926 17 C 0.161 3.839 18 N -0.733 5.733 19 C -0.242 4.242 20 H 0.070 0.930 21 C -0.013 4.013 22 N -0.929 5.929 23 Si 0.906 3.094 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.121 3.879 28 C 0.180 3.820 29 N -0.514 5.514 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.054 0.946 39 H 0.179 0.821 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.068 0.932 46 H 0.020 0.980 47 H 0.022 0.978 48 H 0.385 0.615 49 H 0.255 0.745 50 H 0.106 0.894 51 H 0.070 0.930 52 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.464 21.597 -17.690 29.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.004 4.004 3 C -0.186 4.186 4 C -0.195 4.195 5 C 0.074 3.926 6 N -0.225 5.225 7 C 0.037 3.963 8 C -0.244 4.244 9 C 0.349 3.651 10 O -0.389 6.389 11 N -0.336 5.336 12 C -0.025 4.025 13 C -0.171 4.171 14 C -0.150 4.150 15 C -0.127 4.127 16 H 0.093 0.907 17 C 0.033 3.967 18 N -0.378 5.378 19 C -0.373 4.373 20 H 0.088 0.912 21 C -0.210 4.210 22 N -0.577 5.577 23 Si 0.737 3.263 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C 0.000 4.000 28 C 0.013 3.987 29 N -0.227 5.227 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.196 0.804 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.038 0.962 47 H 0.040 0.960 48 H 0.219 0.781 49 H 0.065 0.935 50 H 0.124 0.876 51 H 0.088 0.912 52 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -8.505 21.391 -18.376 29.455 hybrid contribution 0.756 -1.209 1.470 2.048 sum -7.749 20.183 -16.906 27.445 Atomic orbital electron populations 1.21850 0.92275 1.03112 1.02184 1.19461 0.96454 0.95194 0.89317 1.21726 1.01821 0.93195 1.01882 1.21854 1.01100 1.01121 0.95408 1.23340 0.88081 0.87127 0.94085 1.68278 1.23601 1.09363 1.21254 1.23463 0.87270 0.99839 0.85750 1.21822 1.05280 0.97463 0.99788 1.17852 0.78878 0.85947 0.82464 1.90900 1.47187 1.15859 1.84995 1.48077 1.58947 1.16996 1.09545 1.22038 0.97035 0.83797 0.99606 1.21908 0.98212 1.01723 0.95268 1.21529 1.00444 0.96155 0.96919 1.21618 0.98862 0.96067 0.96178 0.90721 1.20628 0.96096 0.87018 0.92981 1.42423 1.73080 1.05438 1.16870 1.19244 1.31439 0.92474 0.94155 0.91156 1.24769 1.02019 0.96971 0.97202 1.69680 1.52989 1.11172 1.23881 0.86137 0.78840 0.79964 0.81351 1.20592 1.21909 1.21867 1.21720 0.94949 1.00669 0.82694 1.23618 0.92327 0.90196 0.92582 1.68327 1.11850 1.39012 1.03499 0.92675 0.91421 0.91297 0.91906 0.92242 0.91885 0.91280 0.91399 0.92664 0.80393 0.90772 0.90264 0.90723 0.91498 0.91609 0.91355 0.96204 0.96000 0.78082 0.93511 0.87566 0.91205 0.80781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 8.37 37.16 0.31 -0.63 16 2 C 0.00 -0.02 0.92 -155.66 -0.14 -0.16 16 3 C -0.13 -0.88 7.66 37.16 0.28 -0.60 16 4 C -0.14 -0.99 8.37 37.16 0.31 -0.68 16 5 C 0.34 3.55 6.25 -157.07 -0.98 2.57 16 6 N -0.51 -5.83 9.77 -10.39 -0.10 -5.93 16 7 C 0.20 2.40 10.97 -16.78 -0.18 2.21 16 8 C -0.24 -2.81 5.14 -104.69 -0.54 -3.35 16 9 C 0.56 8.36 7.37 -12.34 -0.09 8.27 16 10 O -0.51 -10.01 16.37 5.31 0.09 -9.92 16 11 N -0.60 -7.96 2.98 -174.16 -0.52 -8.48 16 12 C 0.10 0.91 4.95 -3.71 -0.02 0.89 16 13 C -0.13 -1.25 6.08 -26.61 -0.16 -1.41 16 14 C -0.11 -1.29 5.17 -26.68 -0.14 -1.42 16 15 C -0.11 -1.68 2.36 -90.72 -0.21 -1.90 16 16 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 17 C 0.16 3.15 5.66 -4.05 -0.02 3.13 16 18 N -0.73 -18.69 5.38 -59.91 -0.32 -19.02 16 19 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 20 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 21 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 22 N -0.93 -28.87 13.06 55.49 0.72 -28.15 16 23 Si 0.91 22.76 29.55 -169.99 -5.02 17.74 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 26 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 27 C 0.12 1.93 5.50 -3.94 -0.02 1.91 16 28 C 0.18 1.80 8.69 -16.77 -0.15 1.65 16 29 N -0.51 -5.34 8.98 -10.39 -0.09 -5.43 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.53 8.01 -51.93 -0.42 0.11 16 33 H 0.06 0.48 8.04 -51.93 -0.42 0.06 16 34 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.06 0.46 8.04 -51.93 -0.42 0.04 16 36 H 0.07 0.55 8.01 -51.92 -0.42 0.14 16 37 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.18 1.96 8.06 -52.48 -0.42 1.54 16 40 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 41 H 0.08 0.66 4.73 -51.93 -0.25 0.41 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 48 H 0.38 10.52 6.89 -40.82 -0.28 10.24 16 49 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 50 H 0.11 2.15 6.19 -51.93 -0.32 1.83 16 51 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 52 H 0.18 1.34 6.67 -52.49 -0.35 0.99 16 LS Contribution 411.08 15.07 6.19 6.19 Total: -1.00 -33.95 411.08 -9.80 -43.76 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -8.75 Total: 6.24 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -2.00 Total: 3.00 kcal Atomic # 7 Polarization: -66.70 SS G_CDS: -0.31 Total: -67.01 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.09 Total: -9.92 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.95 -9.80 -43.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731528872.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.183 kcal (2) G-P(sol) polarization free energy of solvation -33.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 20.61 seconds