Wall clock time and date at job start Wed Apr 1 2020 05:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46939 * 2 1 4 4 C 1.52999 * 109.46875 * 240.00594 * 2 1 3 5 5 C 1.50695 * 109.47199 * 120.00057 * 2 1 3 6 6 N 1.31872 * 118.95216 * 60.00078 * 5 2 1 7 7 C 1.32139 * 120.96629 * 179.97438 * 6 5 2 8 8 C 1.39950 * 118.93083 * 0.25126 * 7 6 5 9 9 C 1.47821 * 120.94541 * 179.72845 * 8 7 6 10 10 O 1.21561 * 119.99866 * 39.88562 * 9 8 7 11 11 N 1.34783 * 120.00437 * 219.88097 * 9 8 7 12 12 C 1.46923 * 120.62391 * 5.82111 * 11 9 8 13 13 C 1.53196 * 108.77256 * 126.36577 * 12 11 9 14 14 C 1.53045 * 109.31243 * 54.63749 * 13 12 11 15 15 C 1.53047 * 109.53402 * 298.63107 * 14 13 12 16 16 H 1.09005 * 109.49449 * 301.41489 * 15 14 13 17 17 C 1.52994 * 109.49872 * 181.35205 * 15 14 13 18 18 N 1.46500 * 109.47457 * 175.00022 * 17 15 14 19 19 C 1.36935 * 119.99872 * 179.97438 * 18 17 15 20 20 H 1.07995 * 120.00316 * 0.02562 * 19 18 17 21 21 C 1.38822 * 119.99344 * 179.97438 * 19 18 17 22 22 N 1.31611 * 120.00102 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99510 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46969 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46609 * 120.00062 * 23 21 19 26 26 H 1.48497 * 109.47011 * 240.00134 * 23 21 19 27 27 C 1.46922 * 120.63087 * 185.53575 * 11 9 8 28 28 C 1.39953 * 118.11365 * 359.49142 * 8 7 6 29 29 N 1.31870 * 118.95414 * 239.97860 * 5 2 1 30 30 H 1.09003 * 109.47133 * 300.00115 * 1 2 3 31 31 H 1.08998 * 109.47398 * 59.99347 * 1 2 3 32 32 H 1.08995 * 109.47175 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46555 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47109 * 299.99980 * 3 2 1 35 35 H 1.08996 * 109.47011 * 60.00289 * 3 2 1 36 36 H 1.09009 * 109.46493 * 299.99450 * 4 2 1 37 37 H 1.08993 * 109.47504 * 59.99735 * 4 2 1 38 38 H 1.09001 * 109.47271 * 180.02562 * 4 2 1 39 39 H 1.08011 * 120.53885 * 179.97438 * 7 6 5 40 40 H 1.08997 * 109.58423 * 246.14814 * 12 11 9 41 41 H 1.08999 * 109.59098 * 6.44065 * 12 11 9 42 42 H 1.09007 * 109.49590 * 174.58082 * 13 12 11 43 43 H 1.08996 * 109.50328 * 294.64895 * 13 12 11 44 44 H 1.08992 * 109.46405 * 58.65217 * 14 13 12 45 45 H 1.08996 * 109.45771 * 178.62893 * 14 13 12 46 46 H 1.09001 * 109.47063 * 294.99905 * 17 15 14 47 47 H 1.09003 * 109.47285 * 54.99976 * 17 15 14 48 48 H 0.97001 * 119.99316 * 0.02562 * 18 17 15 49 49 H 0.97001 * 119.99928 * 179.97438 * 22 21 19 50 50 H 1.08995 * 109.58942 * 353.42392 * 27 11 9 51 51 H 1.09001 * 109.58505 * 113.84908 * 27 11 9 52 52 H 1.08001 * 120.53541 * 180.24217 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 2.0323 -0.7104 1.2304 6 7 1.7012 -1.9729 1.4185 7 6 2.1199 -2.6343 2.4831 8 6 2.9217 -1.9719 3.4196 9 6 3.4098 -2.6671 4.6293 10 8 3.7835 -3.8217 4.5577 11 7 3.4407 -2.0210 5.8118 12 6 2.8757 -0.6710 5.9419 13 6 1.8683 -0.6673 7.0961 14 6 2.5491 -1.1886 8.3638 15 6 3.0191 -2.6275 8.1374 16 1 2.1649 -3.2524 7.8766 17 6 3.6694 -3.1594 9.4161 18 7 4.0113 -4.5728 9.2386 19 6 4.6084 -5.2659 10.2575 20 1 4.8269 -4.7708 11.1921 21 6 4.9318 -6.6055 10.0895 22 7 4.6650 -7.2090 8.9507 23 14 5.7469 -7.5509 11.4792 24 1 5.9384 -6.6506 12.6446 25 1 4.8841 -8.6934 11.8733 26 1 7.0657 -8.0602 11.0245 27 6 4.0344 -2.6557 6.9964 28 6 3.2524 -0.6341 3.1757 29 7 2.7894 -0.0499 2.0845 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7489 -1.2493 37 1 1.6766 -0.2073 -2.1392 38 1 3.1299 -0.7216 -1.2492 39 1 1.8442 -3.6682 2.6305 40 1 3.6742 0.0406 6.1516 41 1 2.3734 -0.3941 5.0150 42 1 1.5132 0.3492 7.2658 43 1 1.0248 -1.3102 6.8449 44 1 3.4070 -0.5594 8.6003 45 1 1.8413 -1.1641 9.1923 46 1 4.5749 -2.5903 9.6270 47 1 2.9730 -3.0557 10.2482 48 1 3.8153 -5.0174 8.3990 49 1 4.8913 -8.1449 8.8332 50 1 4.2943 -3.6887 6.7658 51 1 4.9293 -2.1091 7.2938 52 1 3.8720 -0.0866 3.8705 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731528872.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:48:04 Heat of formation + Delta-G solvation = -5.193457 kcal Electronic energy + Delta-G solvation = -30739.901884 eV Core-core repulsion = 26738.548561 eV Total energy + Delta-G solvation = -4001.353323 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 9.90 seconds Orbital eigenvalues (eV) -42.65950 -41.12547 -38.94835 -37.69364 -36.69013 -35.13808 -34.52502 -33.15491 -32.76690 -31.34598 -28.27149 -28.18640 -27.58307 -27.09591 -25.60696 -25.46947 -24.80477 -22.77424 -21.89502 -21.05180 -20.52383 -19.26809 -18.99156 -18.18382 -17.69037 -17.28569 -16.72089 -16.43574 -16.16584 -15.78829 -15.52018 -15.41075 -15.35197 -15.16512 -14.95422 -14.64331 -14.61541 -14.32986 -14.11129 -14.03982 -13.78361 -13.25112 -13.13520 -13.03843 -12.90411 -12.81524 -12.71866 -12.54685 -12.22387 -12.14838 -12.12284 -11.98675 -11.94255 -11.93692 -11.85095 -11.82035 -11.56896 -11.34570 -11.09184 -10.97384 -10.58688 -10.43219 -9.75635 -9.01447 -7.95265 -5.25475 -0.67016 -0.15482 1.45021 1.45665 1.46876 1.56928 1.76607 2.50690 2.54810 2.64581 2.90618 3.22043 3.32923 3.38016 3.65943 3.77403 3.81474 3.84611 3.88920 3.99057 4.00541 4.04028 4.20003 4.24880 4.35207 4.39747 4.54619 4.55443 4.74054 4.76765 4.78424 4.80511 4.84099 4.88598 4.89301 4.94827 5.00986 5.03924 5.04322 5.08999 5.14402 5.20176 5.31857 5.33723 5.36936 5.40334 5.46561 5.50750 5.51553 5.70686 6.21961 6.25626 6.84113 6.91817 7.31142 8.08103 8.29466 9.28403 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020454 B = 0.002185 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.582278 B =12811.729197 C =13719.802760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.006 4.006 3 C -0.123 4.123 4 C -0.134 4.134 5 C 0.336 3.664 6 N -0.522 5.522 7 C 0.196 3.804 8 C -0.245 4.245 9 C 0.562 3.438 10 O -0.575 6.575 11 N -0.596 5.596 12 C 0.092 3.908 13 C -0.127 4.127 14 C -0.105 4.105 15 C -0.095 4.095 16 H 0.048 0.952 17 C 0.158 3.842 18 N -0.749 5.749 19 C -0.243 4.243 20 H 0.081 0.919 21 C -0.082 4.082 22 N -0.972 5.972 23 Si 0.976 3.024 24 H -0.261 1.261 25 H -0.295 1.295 26 H -0.295 1.295 27 C 0.128 3.872 28 C 0.194 3.806 29 N -0.514 5.514 30 H 0.052 0.948 31 H 0.089 0.911 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.080 0.920 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.091 0.909 38 H 0.046 0.954 39 H 0.174 0.826 40 H 0.107 0.893 41 H 0.094 0.906 42 H 0.112 0.888 43 H 0.052 0.948 44 H 0.085 0.915 45 H 0.075 0.925 46 H 0.031 0.969 47 H 0.027 0.973 48 H 0.370 0.630 49 H 0.250 0.750 50 H 0.053 0.947 51 H 0.083 0.917 52 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.884 25.582 -17.591 32.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.008 4.008 3 C -0.181 4.181 4 C -0.192 4.192 5 C 0.070 3.930 6 N -0.235 5.235 7 C 0.030 3.970 8 C -0.252 4.252 9 C 0.349 3.651 10 O -0.455 6.455 11 N -0.327 5.327 12 C -0.029 4.029 13 C -0.165 4.165 14 C -0.143 4.143 15 C -0.115 4.115 16 H 0.067 0.933 17 C 0.031 3.969 18 N -0.392 5.392 19 C -0.375 4.375 20 H 0.099 0.901 21 C -0.274 4.274 22 N -0.623 5.623 23 Si 0.805 3.195 24 H -0.185 1.185 25 H -0.222 1.222 26 H -0.222 1.222 27 C 0.006 3.994 28 C 0.027 3.973 29 N -0.226 5.226 30 H 0.071 0.929 31 H 0.108 0.892 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.109 0.891 38 H 0.066 0.934 39 H 0.191 0.809 40 H 0.125 0.875 41 H 0.112 0.888 42 H 0.131 0.869 43 H 0.071 0.929 44 H 0.104 0.896 45 H 0.094 0.906 46 H 0.049 0.951 47 H 0.045 0.955 48 H 0.202 0.798 49 H 0.058 0.942 50 H 0.072 0.928 51 H 0.101 0.899 52 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -8.953 25.475 -18.247 32.589 hybrid contribution 0.844 -2.350 1.409 2.867 sum -8.109 23.125 -16.838 29.732 Atomic orbital electron populations 1.21828 0.91352 1.02642 1.03170 1.19672 0.97151 0.95704 0.88300 1.21694 1.01257 0.92311 1.02797 1.21844 1.00572 1.00687 0.96082 1.23997 0.87332 0.86889 0.94749 1.68350 1.24129 1.10010 1.20988 1.23497 0.87495 0.99971 0.86067 1.21534 1.06535 0.98379 0.98782 1.18282 0.77926 0.85306 0.83583 1.90871 1.50025 1.18644 1.85988 1.48120 1.58153 1.18337 1.08109 1.22422 0.98150 0.81743 1.00536 1.21908 0.97393 1.03416 0.93811 1.21510 1.01499 0.92836 0.98457 1.21473 0.97328 0.98703 0.94017 0.93319 1.20851 0.96718 0.84118 0.95190 1.42697 1.72956 1.07785 1.15720 1.19716 1.30048 0.92840 0.94847 0.90130 1.25668 1.03669 0.98280 0.99745 1.69870 1.55100 1.11097 1.26271 0.85032 0.77209 0.78419 0.78851 1.18506 1.22181 1.22204 1.21402 0.95815 0.98308 0.83893 1.24007 0.91481 0.89179 0.92668 1.68466 1.11952 1.38711 1.03513 0.92922 0.89189 0.92506 0.92704 0.90145 0.92166 0.92513 0.89062 0.93447 0.80851 0.87487 0.88819 0.86925 0.92912 0.89635 0.90633 0.95106 0.95527 0.79799 0.94166 0.92826 0.89925 0.77990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.56 8.37 71.98 0.60 -0.96 16 2 C -0.01 -0.09 0.92 -52.93 -0.05 -0.14 16 3 C -0.12 -1.37 7.66 71.98 0.55 -0.82 16 4 C -0.13 -1.73 8.37 71.98 0.60 -1.13 16 5 C 0.34 6.63 6.25 138.70 0.87 7.49 16 6 N -0.52 -11.86 9.77 -186.80 -1.82 -13.68 16 7 C 0.20 4.79 10.97 85.06 0.93 5.73 16 8 C -0.24 -5.84 5.14 -19.91 -0.10 -5.94 16 9 C 0.56 17.34 7.37 86.78 0.64 17.98 16 10 O -0.58 -24.36 16.37 -3.91 -0.06 -24.42 16 11 N -0.60 -15.56 2.98 -823.18 -2.45 -18.01 16 12 C 0.09 1.42 4.95 86.36 0.43 1.85 16 13 C -0.13 -1.95 6.08 30.67 0.19 -1.76 16 14 C -0.11 -2.11 5.17 30.63 0.16 -1.95 16 15 C -0.10 -2.99 2.36 -10.86 -0.03 -3.01 16 16 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 17 C 0.16 6.17 5.66 86.38 0.49 6.66 16 18 N -0.75 -39.43 5.38 -343.45 -1.85 -41.27 16 19 C -0.24 -13.92 9.99 84.04 0.84 -13.08 16 20 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 21 C -0.08 -4.89 5.50 84.87 0.47 -4.42 16 22 N -0.97 -62.98 13.06 21.65 0.28 -62.70 16 23 Si 0.98 47.63 29.55 68.60 2.03 49.65 16 24 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 25 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 26 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 27 C 0.13 4.19 5.50 86.22 0.47 4.67 16 28 C 0.19 3.51 8.69 85.06 0.74 4.25 16 29 N -0.51 -9.65 8.98 -186.80 -1.68 -11.33 16 30 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 0.82 8.01 -2.39 -0.02 0.80 16 33 H 0.05 0.71 8.04 -2.39 -0.02 0.69 16 34 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.06 0.71 8.04 -2.39 -0.02 0.69 16 36 H 0.06 0.87 8.01 -2.38 -0.02 0.86 16 37 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.17 4.23 8.06 -2.90 -0.02 4.21 16 40 H 0.11 1.06 8.13 -2.39 -0.02 1.04 16 41 H 0.09 1.23 4.73 -2.39 -0.01 1.22 16 42 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16 43 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.37 21.50 6.89 -92.71 -0.64 20.86 16 49 H 0.25 15.65 8.31 -92.71 -0.77 14.88 16 50 H 0.05 2.35 6.19 -2.39 -0.01 2.34 16 51 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 52 H 0.20 2.41 6.67 -2.91 -0.02 2.39 16 Total: -1.00 -78.60 411.08 2.52 -76.08 By element: Atomic # 1 Polarization: 29.97 SS G_CDS: 0.27 Total: 30.24 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: 7.80 Total: 15.43 kcal Atomic # 7 Polarization: -139.47 SS G_CDS: -7.52 Total: -146.99 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.06 Total: -24.42 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 2.03 Total: 49.65 kcal Total: -78.60 2.52 -76.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731528872.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.890 kcal (2) G-P(sol) polarization free energy of solvation -78.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.91 seconds