Wall clock time and date at job start Wed Apr 1 2020 05:48:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53005 * 109.46939 * 2 1
4 4 C 1.52999 * 109.46875 * 240.00594 * 2 1 3
5 5 C 1.50695 * 109.47199 * 120.00057 * 2 1 3
6 6 N 1.31872 * 118.95216 * 60.00078 * 5 2 1
7 7 C 1.32139 * 120.96629 * 179.97438 * 6 5 2
8 8 C 1.39950 * 118.93083 * 0.25126 * 7 6 5
9 9 C 1.47821 * 120.94541 * 179.72845 * 8 7 6
10 10 O 1.21561 * 119.99866 * 39.88562 * 9 8 7
11 11 N 1.34783 * 120.00437 * 219.88097 * 9 8 7
12 12 C 1.46923 * 120.62391 * 5.82111 * 11 9 8
13 13 C 1.53196 * 108.77256 * 126.36577 * 12 11 9
14 14 C 1.53045 * 109.31243 * 54.63749 * 13 12 11
15 15 C 1.53047 * 109.53402 * 298.63107 * 14 13 12
16 16 H 1.09005 * 109.49449 * 301.41489 * 15 14 13
17 17 C 1.52994 * 109.49872 * 181.35205 * 15 14 13
18 18 N 1.46500 * 109.47457 * 175.00022 * 17 15 14
19 19 C 1.36935 * 119.99872 * 179.97438 * 18 17 15
20 20 H 1.07995 * 120.00316 * 0.02562 * 19 18 17
21 21 C 1.38822 * 119.99344 * 179.97438 * 19 18 17
22 22 N 1.31611 * 120.00102 * 0.02562 * 21 19 18
23 23 Si 1.86807 * 119.99510 * 179.97438 * 21 19 18
24 24 H 1.48502 * 109.46969 * 0.02562 * 23 21 19
25 25 H 1.48502 * 109.46609 * 120.00062 * 23 21 19
26 26 H 1.48497 * 109.47011 * 240.00134 * 23 21 19
27 27 C 1.46922 * 120.63087 * 185.53575 * 11 9 8
28 28 C 1.39953 * 118.11365 * 359.49142 * 8 7 6
29 29 N 1.31870 * 118.95414 * 239.97860 * 5 2 1
30 30 H 1.09003 * 109.47133 * 300.00115 * 1 2 3
31 31 H 1.08998 * 109.47398 * 59.99347 * 1 2 3
32 32 H 1.08995 * 109.47175 * 179.97438 * 1 2 3
33 33 H 1.09001 * 109.46555 * 180.02562 * 3 2 1
34 34 H 1.09002 * 109.47109 * 299.99980 * 3 2 1
35 35 H 1.08996 * 109.47011 * 60.00289 * 3 2 1
36 36 H 1.09009 * 109.46493 * 299.99450 * 4 2 1
37 37 H 1.08993 * 109.47504 * 59.99735 * 4 2 1
38 38 H 1.09001 * 109.47271 * 180.02562 * 4 2 1
39 39 H 1.08011 * 120.53885 * 179.97438 * 7 6 5
40 40 H 1.08997 * 109.58423 * 246.14814 * 12 11 9
41 41 H 1.08999 * 109.59098 * 6.44065 * 12 11 9
42 42 H 1.09007 * 109.49590 * 174.58082 * 13 12 11
43 43 H 1.08996 * 109.50328 * 294.64895 * 13 12 11
44 44 H 1.08992 * 109.46405 * 58.65217 * 14 13 12
45 45 H 1.08996 * 109.45771 * 178.62893 * 14 13 12
46 46 H 1.09001 * 109.47063 * 294.99905 * 17 15 14
47 47 H 1.09003 * 109.47285 * 54.99976 * 17 15 14
48 48 H 0.97001 * 119.99316 * 0.02562 * 18 17 15
49 49 H 0.97001 * 119.99928 * 179.97438 * 22 21 19
50 50 H 1.08995 * 109.58942 * 353.42392 * 27 11 9
51 51 H 1.09001 * 109.58505 * 113.84908 * 27 11 9
52 52 H 1.08001 * 120.53541 * 180.24217 * 28 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 6 2.0399 -0.7211 -1.2493
5 6 2.0323 -0.7104 1.2304
6 7 1.7012 -1.9729 1.4185
7 6 2.1199 -2.6343 2.4831
8 6 2.9217 -1.9719 3.4196
9 6 3.4098 -2.6671 4.6293
10 8 3.7835 -3.8217 4.5577
11 7 3.4407 -2.0210 5.8118
12 6 2.8757 -0.6710 5.9419
13 6 1.8683 -0.6673 7.0961
14 6 2.5491 -1.1886 8.3638
15 6 3.0191 -2.6275 8.1374
16 1 2.1649 -3.2524 7.8766
17 6 3.6694 -3.1594 9.4161
18 7 4.0113 -4.5728 9.2386
19 6 4.6084 -5.2659 10.2575
20 1 4.8269 -4.7708 11.1921
21 6 4.9318 -6.6055 10.0895
22 7 4.6650 -7.2090 8.9507
23 14 5.7469 -7.5509 11.4792
24 1 5.9384 -6.6506 12.6446
25 1 4.8841 -8.6934 11.8733
26 1 7.0657 -8.0602 11.0245
27 6 4.0344 -2.6557 6.9964
28 6 3.2524 -0.6341 3.1757
29 7 2.7894 -0.0499 2.0845
30 1 -0.3633 0.5139 0.8900
31 1 -0.3634 0.5139 -0.8899
32 1 -0.3633 -1.0276 -0.0005
33 1 3.1300 1.4425 -0.0005
34 1 1.6766 1.9564 -0.8900
35 1 1.6767 1.9563 0.8900
36 1 1.6766 -1.7489 -1.2493
37 1 1.6766 -0.2073 -2.1392
38 1 3.1299 -0.7216 -1.2492
39 1 1.8442 -3.6682 2.6305
40 1 3.6742 0.0406 6.1516
41 1 2.3734 -0.3941 5.0150
42 1 1.5132 0.3492 7.2658
43 1 1.0248 -1.3102 6.8449
44 1 3.4070 -0.5594 8.6003
45 1 1.8413 -1.1641 9.1923
46 1 4.5749 -2.5903 9.6270
47 1 2.9730 -3.0557 10.2482
48 1 3.8153 -5.0174 8.3990
49 1 4.8913 -8.1449 8.8332
50 1 4.2943 -3.6887 6.7658
51 1 4.9293 -2.1091 7.2938
52 1 3.8720 -0.0866 3.8705
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001731528872.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:48:04
Heat of formation + Delta-G solvation = -5.193457 kcal
Electronic energy + Delta-G solvation = -30739.901884 eV
Core-core repulsion = 26738.548561 eV
Total energy + Delta-G solvation = -4001.353323 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 346.211 amu
Computer time = 9.90 seconds
Orbital eigenvalues (eV)
-42.65950 -41.12547 -38.94835 -37.69364 -36.69013 -35.13808 -34.52502 -33.15491
-32.76690 -31.34598 -28.27149 -28.18640 -27.58307 -27.09591 -25.60696 -25.46947
-24.80477 -22.77424 -21.89502 -21.05180 -20.52383 -19.26809 -18.99156 -18.18382
-17.69037 -17.28569 -16.72089 -16.43574 -16.16584 -15.78829 -15.52018 -15.41075
-15.35197 -15.16512 -14.95422 -14.64331 -14.61541 -14.32986 -14.11129 -14.03982
-13.78361 -13.25112 -13.13520 -13.03843 -12.90411 -12.81524 -12.71866 -12.54685
-12.22387 -12.14838 -12.12284 -11.98675 -11.94255 -11.93692 -11.85095 -11.82035
-11.56896 -11.34570 -11.09184 -10.97384 -10.58688 -10.43219 -9.75635 -9.01447
-7.95265 -5.25475 -0.67016 -0.15482 1.45021 1.45665 1.46876 1.56928
1.76607 2.50690 2.54810 2.64581 2.90618 3.22043 3.32923 3.38016
3.65943 3.77403 3.81474 3.84611 3.88920 3.99057 4.00541 4.04028
4.20003 4.24880 4.35207 4.39747 4.54619 4.55443 4.74054 4.76765
4.78424 4.80511 4.84099 4.88598 4.89301 4.94827 5.00986 5.03924
5.04322 5.08999 5.14402 5.20176 5.31857 5.33723 5.36936 5.40334
5.46561 5.50750 5.51553 5.70686 6.21961 6.25626 6.84113 6.91817
7.31142 8.08103 8.29466 9.28403
Molecular weight = 346.21amu
Principal moments of inertia in cm(-1)
A = 0.020454 B = 0.002185 C = 0.002040
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1368.582278 B =12811.729197 C =13719.802760
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.006 4.006
3 C -0.123 4.123
4 C -0.134 4.134
5 C 0.336 3.664
6 N -0.522 5.522
7 C 0.196 3.804
8 C -0.245 4.245
9 C 0.562 3.438
10 O -0.575 6.575
11 N -0.596 5.596
12 C 0.092 3.908
13 C -0.127 4.127
14 C -0.105 4.105
15 C -0.095 4.095
16 H 0.048 0.952
17 C 0.158 3.842
18 N -0.749 5.749
19 C -0.243 4.243
20 H 0.081 0.919
21 C -0.082 4.082
22 N -0.972 5.972
23 Si 0.976 3.024
24 H -0.261 1.261
25 H -0.295 1.295
26 H -0.295 1.295
27 C 0.128 3.872
28 C 0.194 3.806
29 N -0.514 5.514
30 H 0.052 0.948
31 H 0.089 0.911
32 H 0.056 0.944
33 H 0.054 0.946
34 H 0.080 0.920
35 H 0.059 0.941
36 H 0.056 0.944
37 H 0.091 0.909
38 H 0.046 0.954
39 H 0.174 0.826
40 H 0.107 0.893
41 H 0.094 0.906
42 H 0.112 0.888
43 H 0.052 0.948
44 H 0.085 0.915
45 H 0.075 0.925
46 H 0.031 0.969
47 H 0.027 0.973
48 H 0.370 0.630
49 H 0.250 0.750
50 H 0.053 0.947
51 H 0.083 0.917
52 H 0.204 0.796
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.884 25.582 -17.591 32.292
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C -0.008 4.008
3 C -0.181 4.181
4 C -0.192 4.192
5 C 0.070 3.930
6 N -0.235 5.235
7 C 0.030 3.970
8 C -0.252 4.252
9 C 0.349 3.651
10 O -0.455 6.455
11 N -0.327 5.327
12 C -0.029 4.029
13 C -0.165 4.165
14 C -0.143 4.143
15 C -0.115 4.115
16 H 0.067 0.933
17 C 0.031 3.969
18 N -0.392 5.392
19 C -0.375 4.375
20 H 0.099 0.901
21 C -0.274 4.274
22 N -0.623 5.623
23 Si 0.805 3.195
24 H -0.185 1.185
25 H -0.222 1.222
26 H -0.222 1.222
27 C 0.006 3.994
28 C 0.027 3.973
29 N -0.226 5.226
30 H 0.071 0.929
31 H 0.108 0.892
32 H 0.075 0.925
33 H 0.073 0.927
34 H 0.099 0.901
35 H 0.078 0.922
36 H 0.075 0.925
37 H 0.109 0.891
38 H 0.066 0.934
39 H 0.191 0.809
40 H 0.125 0.875
41 H 0.112 0.888
42 H 0.131 0.869
43 H 0.071 0.929
44 H 0.104 0.896
45 H 0.094 0.906
46 H 0.049 0.951
47 H 0.045 0.955
48 H 0.202 0.798
49 H 0.058 0.942
50 H 0.072 0.928
51 H 0.101 0.899
52 H 0.220 0.780
Dipole moment (debyes) X Y Z Total
from point charges -8.953 25.475 -18.247 32.589
hybrid contribution 0.844 -2.350 1.409 2.867
sum -8.109 23.125 -16.838 29.732
Atomic orbital electron populations
1.21828 0.91352 1.02642 1.03170 1.19672 0.97151 0.95704 0.88300
1.21694 1.01257 0.92311 1.02797 1.21844 1.00572 1.00687 0.96082
1.23997 0.87332 0.86889 0.94749 1.68350 1.24129 1.10010 1.20988
1.23497 0.87495 0.99971 0.86067 1.21534 1.06535 0.98379 0.98782
1.18282 0.77926 0.85306 0.83583 1.90871 1.50025 1.18644 1.85988
1.48120 1.58153 1.18337 1.08109 1.22422 0.98150 0.81743 1.00536
1.21908 0.97393 1.03416 0.93811 1.21510 1.01499 0.92836 0.98457
1.21473 0.97328 0.98703 0.94017 0.93319 1.20851 0.96718 0.84118
0.95190 1.42697 1.72956 1.07785 1.15720 1.19716 1.30048 0.92840
0.94847 0.90130 1.25668 1.03669 0.98280 0.99745 1.69870 1.55100
1.11097 1.26271 0.85032 0.77209 0.78419 0.78851 1.18506 1.22181
1.22204 1.21402 0.95815 0.98308 0.83893 1.24007 0.91481 0.89179
0.92668 1.68466 1.11952 1.38711 1.03513 0.92922 0.89189 0.92506
0.92704 0.90145 0.92166 0.92513 0.89062 0.93447 0.80851 0.87487
0.88819 0.86925 0.92912 0.89635 0.90633 0.95106 0.95527 0.79799
0.94166 0.92826 0.89925 0.77990
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.56 8.37 71.98 0.60 -0.96 16
2 C -0.01 -0.09 0.92 -52.93 -0.05 -0.14 16
3 C -0.12 -1.37 7.66 71.98 0.55 -0.82 16
4 C -0.13 -1.73 8.37 71.98 0.60 -1.13 16
5 C 0.34 6.63 6.25 138.70 0.87 7.49 16
6 N -0.52 -11.86 9.77 -186.80 -1.82 -13.68 16
7 C 0.20 4.79 10.97 85.06 0.93 5.73 16
8 C -0.24 -5.84 5.14 -19.91 -0.10 -5.94 16
9 C 0.56 17.34 7.37 86.78 0.64 17.98 16
10 O -0.58 -24.36 16.37 -3.91 -0.06 -24.42 16
11 N -0.60 -15.56 2.98 -823.18 -2.45 -18.01 16
12 C 0.09 1.42 4.95 86.36 0.43 1.85 16
13 C -0.13 -1.95 6.08 30.67 0.19 -1.76 16
14 C -0.11 -2.11 5.17 30.63 0.16 -1.95 16
15 C -0.10 -2.99 2.36 -10.86 -0.03 -3.01 16
16 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16
17 C 0.16 6.17 5.66 86.38 0.49 6.66 16
18 N -0.75 -39.43 5.38 -343.45 -1.85 -41.27 16
19 C -0.24 -13.92 9.99 84.04 0.84 -13.08 16
20 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16
21 C -0.08 -4.89 5.50 84.87 0.47 -4.42 16
22 N -0.97 -62.98 13.06 21.65 0.28 -62.70 16
23 Si 0.98 47.63 29.55 68.60 2.03 49.65 16
24 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16
25 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16
26 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16
27 C 0.13 4.19 5.50 86.22 0.47 4.67 16
28 C 0.19 3.51 8.69 85.06 0.74 4.25 16
29 N -0.51 -9.65 8.98 -186.80 -1.68 -11.33 16
30 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16
31 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16
32 H 0.06 0.82 8.01 -2.39 -0.02 0.80 16
33 H 0.05 0.71 8.04 -2.39 -0.02 0.69 16
34 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16
35 H 0.06 0.71 8.04 -2.39 -0.02 0.69 16
36 H 0.06 0.87 8.01 -2.38 -0.02 0.86 16
37 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16
38 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16
39 H 0.17 4.23 8.06 -2.90 -0.02 4.21 16
40 H 0.11 1.06 8.13 -2.39 -0.02 1.04 16
41 H 0.09 1.23 4.73 -2.39 -0.01 1.22 16
42 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16
43 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16
44 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16
45 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16
46 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16
47 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16
48 H 0.37 21.50 6.89 -92.71 -0.64 20.86 16
49 H 0.25 15.65 8.31 -92.71 -0.77 14.88 16
50 H 0.05 2.35 6.19 -2.39 -0.01 2.34 16
51 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16
52 H 0.20 2.41 6.67 -2.91 -0.02 2.39 16
Total: -1.00 -78.60 411.08 2.52 -76.08
By element:
Atomic # 1 Polarization: 29.97 SS G_CDS: 0.27 Total: 30.24 kcal
Atomic # 6 Polarization: 7.63 SS G_CDS: 7.80 Total: 15.43 kcal
Atomic # 7 Polarization: -139.47 SS G_CDS: -7.52 Total: -146.99 kcal
Atomic # 8 Polarization: -24.36 SS G_CDS: -0.06 Total: -24.42 kcal
Atomic # 14 Polarization: 47.63 SS G_CDS: 2.03 Total: 49.65 kcal
Total: -78.60 2.52 -76.08 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001731528872.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 70.890 kcal
(2) G-P(sol) polarization free energy of solvation -78.600 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.710 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.517 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.083 kcal
(6) G-S(sol) free energy of system = (1) + (5) -5.193 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 9.91 seconds