Wall clock time and date at job start Wed Apr 1 2020 04:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47369 * 2 1 4 4 C 1.50703 * 109.47569 * 120.00640 * 2 1 3 5 5 C 1.38607 * 119.54299 * 274.99853 * 4 2 1 6 6 C 1.38587 * 119.34853 * 180.02562 * 5 4 2 7 7 C 1.38637 * 118.48827 * 0.02562 * 6 5 4 8 8 C 1.39271 * 119.06003 * 359.97438 * 7 6 5 9 9 C 1.48170 * 119.72075 * 180.02562 * 8 7 6 10 10 O 1.21508 * 119.99939 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99808 * 180.02562 * 9 8 7 12 12 C 1.46497 * 119.99868 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.47064 * 179.97438 * 12 11 9 14 14 N 1.46898 * 109.47128 * 179.97438 * 13 12 11 15 15 C 1.46898 * 111.00219 * 169.99790 * 14 13 12 16 16 C 1.53233 * 109.34305 * 172.74287 * 15 14 13 17 17 N 1.47085 * 108.51968 * 53.82976 * 16 15 14 18 18 C 1.36943 * 120.87943 * 128.79060 * 17 16 15 19 19 H 1.07999 * 119.99657 * 206.59025 * 18 17 16 20 20 C 1.38807 * 119.99782 * 26.59509 * 18 17 16 21 21 N 1.31618 * 120.00188 * 17.00985 * 20 18 17 22 22 Si 1.86799 * 119.99686 * 197.00832 * 20 18 17 23 23 H 1.48500 * 109.47237 * 90.00245 * 22 20 18 24 24 H 1.48506 * 109.47030 * 209.99713 * 22 20 18 25 25 H 1.48496 * 109.47404 * 330.00045 * 22 20 18 26 26 C 1.47074 * 118.23733 * 308.81809 * 17 16 15 27 27 C 1.46896 * 111.00297 * 45.69555 * 14 13 12 28 28 N 1.31491 * 119.55142 * 95.28872 * 4 2 1 29 29 H 1.09000 * 109.47599 * 59.99720 * 1 2 3 30 30 H 1.09002 * 109.47449 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46992 * 299.99664 * 1 2 3 32 32 H 1.09002 * 109.46992 * 240.00336 * 2 1 3 33 33 H 1.09004 * 109.47310 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47260 * 300.00177 * 3 2 1 35 35 H 1.08997 * 109.47153 * 60.00520 * 3 2 1 36 36 H 1.07997 * 120.32935 * 0.03966 * 5 4 2 37 37 H 1.07995 * 120.75656 * 179.97438 * 6 5 4 38 38 H 1.07994 * 120.47161 * 180.02562 * 7 6 5 39 39 H 0.97002 * 119.99728 * 359.97438 * 11 9 8 40 40 H 1.09000 * 109.47402 * 59.99765 * 12 11 9 41 41 H 1.08997 * 109.46802 * 299.99575 * 12 11 9 42 42 H 1.09000 * 109.47106 * 59.99703 * 13 12 11 43 43 H 1.09000 * 109.46810 * 299.99999 * 13 12 11 44 44 H 1.09004 * 109.48987 * 52.78650 * 15 14 13 45 45 H 1.08997 * 109.49438 * 292.71233 * 15 14 13 46 46 H 1.08997 * 109.63057 * 173.53707 * 16 15 14 47 47 H 1.09002 * 109.63037 * 293.92905 * 16 15 14 48 48 H 0.97006 * 119.99914 * 179.97438 * 21 20 18 49 49 H 1.09005 * 109.63035 * 170.89170 * 26 17 16 50 50 H 1.08997 * 109.62936 * 291.46961 * 26 17 16 51 51 H 1.09005 * 109.49472 * 67.29128 * 27 14 13 52 52 H 1.09000 * 109.49394 * 307.21848 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 2.1612 -0.0100 2.4194 6 6 2.6241 -0.6673 3.5483 7 6 2.9445 -2.0122 3.4456 8 6 2.7903 -2.6526 2.2186 9 6 3.1278 -4.0899 2.0925 10 8 3.5367 -4.7048 3.0574 11 7 2.9812 -4.7150 0.9075 12 6 3.3143 -6.1362 0.7830 13 6 3.0591 -6.5958 -0.6539 14 7 3.3937 -8.0207 -0.7789 15 6 2.9423 -8.5562 -2.0702 16 6 3.4662 -9.9864 -2.2376 17 7 3.0614 -10.7729 -1.0625 18 6 2.4245 -11.9764 -1.2076 19 1 1.7676 -12.3369 -0.4299 20 6 2.6232 -12.7329 -2.3543 21 7 3.6503 -12.4823 -3.1383 22 14 1.4331 -14.1069 -2.7847 23 1 0.3384 -13.5668 -3.6304 24 1 2.1538 -15.1713 -3.5283 25 1 0.8608 -14.6749 -1.5376 26 6 3.3583 -10.2321 0.2726 27 6 2.8387 -8.7921 0.3412 28 7 2.3480 -1.9851 1.1598 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8932 -0.5138 -0.8900 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 1.9031 1.0376 2.4659 37 1 2.7336 -0.1435 4.4864 38 1 3.3077 -2.5558 4.3052 39 1 2.6544 -4.2241 0.1373 40 1 2.6930 -6.7162 1.4654 41 1 4.3649 -6.2862 1.0316 42 1 3.6801 -6.0159 -1.3366 43 1 2.0084 -6.4458 -0.9021 44 1 3.3257 -7.9316 -2.8770 45 1 1.8527 -8.5620 -2.1007 46 1 3.0411 -10.4290 -3.1385 47 1 4.5534 -9.9714 -2.3149 48 1 3.7893 -13.0112 -3.9395 49 1 2.8619 -10.8370 1.0315 50 1 4.4353 -10.2410 0.4401 51 1 1.7505 -8.7947 0.2773 52 1 3.1469 -8.3387 1.2832 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752367178.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:44 Heat of formation + Delta-G solvation = 28.391442 kcal Electronic energy + Delta-G solvation = -29735.679555 eV Core-core repulsion = 25735.782582 eV Total energy + Delta-G solvation = -3999.896973 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.10185 -39.44765 -38.21845 -36.01379 -35.46255 -34.03077 -33.00292 -31.37407 -30.81657 -30.11475 -28.65748 -27.70033 -26.18073 -24.70945 -24.32782 -23.49976 -22.47999 -21.65342 -21.06401 -20.31637 -19.08245 -18.10585 -17.30076 -16.80535 -16.37998 -15.90893 -15.79784 -15.24975 -14.98650 -14.90349 -14.64213 -14.44185 -14.29512 -14.04789 -13.88006 -13.56303 -13.49108 -13.28035 -13.18819 -12.94202 -12.82646 -12.45449 -12.42974 -11.92501 -11.67518 -11.65199 -11.40827 -11.36593 -11.31617 -11.01265 -10.72121 -10.51356 -10.44133 -10.36363 -10.26892 -10.04094 -9.86355 -9.71750 -9.59166 -9.45719 -9.09874 -8.48439 -7.84279 -6.64369 -5.75724 -3.16755 0.27614 0.77772 2.48817 2.86084 3.39472 3.46254 3.47686 3.49392 3.56316 4.11245 4.31701 4.48871 4.51680 4.54605 4.56041 4.63410 4.70477 4.80330 4.90631 5.01359 5.14080 5.15616 5.23103 5.32285 5.39512 5.41237 5.45295 5.47974 5.54743 5.58063 5.69641 5.75922 5.80122 5.84808 5.92706 5.94472 6.03858 6.14442 6.16656 6.25636 6.27578 6.37629 6.55509 6.71415 6.96480 7.19518 7.26140 7.47804 7.57193 7.65259 7.71374 7.83644 8.00694 8.45930 9.23789 9.87156 10.45773 11.33150 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020269 B = 0.001782 C = 0.001698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.091833 B =15705.371433 C =16490.872156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.048 4.048 3 C -0.148 4.148 4 C 0.136 3.864 5 C -0.150 4.150 6 C -0.079 4.079 7 C -0.117 4.117 8 C 0.086 3.914 9 C 0.569 3.431 10 O -0.531 6.531 11 N -0.707 5.707 12 C 0.113 3.887 13 C 0.044 3.956 14 N -0.527 5.527 15 C 0.037 3.963 16 C 0.178 3.822 17 N -0.596 5.596 18 C -0.250 4.250 19 H 0.066 0.934 20 C 0.000 4.000 21 N -0.904 5.904 22 Si 0.903 3.097 23 H -0.288 1.288 24 H -0.291 1.291 25 H -0.279 1.279 26 C 0.148 3.852 27 C 0.034 3.966 28 N -0.458 5.458 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.093 0.907 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.141 0.859 37 H 0.143 0.857 38 H 0.149 0.851 39 H 0.410 0.590 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.033 0.967 44 H 0.061 0.939 45 H 0.026 0.974 46 H 0.089 0.911 47 H 0.027 0.973 48 H 0.254 0.746 49 H 0.056 0.944 50 H 0.027 0.973 51 H 0.028 0.972 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.187 31.106 8.507 32.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.067 4.067 3 C -0.206 4.206 4 C -0.005 4.005 5 C -0.170 4.170 6 C -0.105 4.105 7 C -0.138 4.138 8 C -0.052 4.052 9 C 0.353 3.647 10 O -0.407 6.407 11 N -0.358 5.358 12 C -0.010 4.010 13 C -0.084 4.084 14 N -0.253 5.253 15 C -0.092 4.092 16 C 0.052 3.948 17 N -0.319 5.319 18 C -0.380 4.380 19 H 0.084 0.916 20 C -0.198 4.198 21 N -0.548 5.548 22 Si 0.733 3.267 23 H -0.215 1.215 24 H -0.218 1.218 25 H -0.205 1.205 26 C 0.022 3.978 27 C -0.095 4.095 28 N -0.170 5.170 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.111 0.889 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.159 0.841 37 H 0.160 0.840 38 H 0.167 0.833 39 H 0.245 0.755 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.052 0.948 44 H 0.080 0.920 45 H 0.044 0.956 46 H 0.107 0.893 47 H 0.045 0.955 48 H 0.064 0.936 49 H 0.074 0.926 50 H 0.045 0.955 51 H 0.047 0.953 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.400 29.963 8.276 31.270 hybrid contribution -1.509 0.095 0.115 1.516 sum -4.909 30.058 8.391 31.591 Atomic orbital electron populations 1.21813 0.93356 1.02590 1.02243 1.20087 0.96362 0.95432 0.94803 1.21935 1.01455 0.94710 1.02479 1.21251 0.94799 0.89325 0.95105 1.22224 0.99771 1.01749 0.93225 1.21644 0.95719 0.93987 0.99126 1.22144 0.98019 0.95073 0.98569 1.21148 0.99193 0.94505 0.90393 1.17834 0.78302 0.85172 0.83349 1.90807 1.45970 1.66065 1.37907 1.45810 1.66033 1.11755 1.12194 1.21654 1.02255 0.79431 0.97630 1.22248 0.99145 0.91803 0.95235 1.62035 1.59644 0.99813 1.03794 1.22921 0.97402 0.99842 0.89077 1.20862 0.97103 0.85019 0.91857 1.44130 1.68269 1.19997 0.99497 1.19216 1.19019 0.95459 1.04315 0.91610 1.25026 0.97045 0.97920 0.99847 1.70032 1.26950 1.42038 1.15821 0.86275 0.80624 0.81560 0.78232 1.21543 1.21758 1.20483 1.20984 0.97422 0.90385 0.89032 1.22806 0.96861 0.96862 0.93020 1.67348 1.09695 1.09116 1.30824 0.91624 0.92121 0.92518 0.88870 0.92242 0.91556 0.92157 0.84118 0.83958 0.83332 0.75473 0.90643 0.90144 0.90532 0.94840 0.92022 0.95556 0.89281 0.95468 0.93639 0.92572 0.95532 0.95328 0.91246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.75 9.18 37.15 0.34 -0.41 16 2 C -0.05 -0.28 3.23 -91.78 -0.30 -0.58 16 3 C -0.15 -0.59 8.62 37.16 0.32 -0.27 16 4 C 0.14 1.08 5.79 -82.60 -0.48 0.60 16 5 C -0.15 -0.94 9.18 -39.32 -0.36 -1.30 16 6 C -0.08 -0.52 10.17 -39.31 -0.40 -0.92 16 7 C -0.12 -1.08 9.63 -39.05 -0.38 -1.46 16 8 C 0.09 0.96 6.75 -83.01 -0.56 0.40 16 9 C 0.57 7.62 7.81 -12.18 -0.10 7.52 16 10 O -0.53 -8.63 16.32 5.36 0.09 -8.55 16 11 N -0.71 -8.62 5.55 -61.15 -0.34 -8.96 16 12 C 0.11 1.54 4.92 -4.04 -0.02 1.52 16 13 C 0.04 0.62 5.38 -3.82 -0.02 0.60 16 14 N -0.53 -9.44 4.78 -234.33 -1.12 -10.56 16 15 C 0.04 0.72 5.58 -3.70 -0.02 0.70 16 16 C 0.18 4.34 5.42 -3.60 -0.02 4.32 16 17 N -0.60 -15.35 3.04 -172.02 -0.52 -15.88 16 18 C -0.25 -7.00 9.63 -15.06 -0.15 -7.14 16 19 H 0.07 1.81 7.88 -52.49 -0.41 1.39 16 20 C 0.00 0.00 4.93 -17.43 -0.09 -0.09 16 21 N -0.90 -26.49 11.15 55.49 0.62 -25.88 16 22 Si 0.90 21.93 29.59 -169.99 -5.03 16.90 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 26 C 0.15 3.25 6.69 -3.61 -0.02 3.22 16 27 C 0.03 0.62 5.04 -3.70 -0.02 0.60 16 28 N -0.46 -4.67 9.45 -6.06 -0.06 -4.72 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.06 0.18 6.48 -51.93 -0.34 -0.16 16 36 H 0.14 0.51 6.30 -52.49 -0.33 0.18 16 37 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 38 H 0.15 1.32 7.64 -52.49 -0.40 0.92 16 39 H 0.41 4.34 7.80 -40.82 -0.32 4.02 16 40 H 0.08 1.10 6.18 -51.93 -0.32 0.78 16 41 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 42 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.03 0.46 8.08 -51.93 -0.42 0.04 16 44 H 0.06 1.08 8.11 -51.93 -0.42 0.66 16 45 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.09 2.39 6.12 -51.93 -0.32 2.07 16 47 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 49 H 0.06 1.18 7.95 -51.93 -0.41 0.77 16 50 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 51 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 52 H 0.07 1.13 5.73 -51.93 -0.30 0.84 16 LS Contribution 411.51 15.07 6.20 6.20 Total: -1.00 -32.69 411.51 -11.04 -43.73 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -8.62 Total: 0.38 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: -2.26 Total: 7.32 kcal Atomic # 7 Polarization: -64.58 SS G_CDS: -1.42 Total: -66.00 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: 0.09 Total: -8.55 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -32.69 -11.04 -43.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752367178.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.124 kcal (2) G-P(sol) polarization free energy of solvation -32.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds