Wall clock time and date at job start Wed Apr 1 2020 04:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47369 * 2 1 4 4 C 1.50703 * 109.47569 * 120.00640 * 2 1 3 5 5 C 1.38607 * 119.54299 * 274.99853 * 4 2 1 6 6 C 1.38587 * 119.34853 * 180.02562 * 5 4 2 7 7 C 1.38637 * 118.48827 * 0.02562 * 6 5 4 8 8 C 1.39271 * 119.06003 * 359.97438 * 7 6 5 9 9 C 1.48170 * 119.72075 * 180.02562 * 8 7 6 10 10 O 1.21508 * 119.99939 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99808 * 180.02562 * 9 8 7 12 12 C 1.46497 * 119.99868 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.47064 * 179.97438 * 12 11 9 14 14 N 1.46898 * 109.47128 * 179.97438 * 13 12 11 15 15 C 1.46898 * 111.00219 * 169.99790 * 14 13 12 16 16 C 1.53233 * 109.34305 * 172.74287 * 15 14 13 17 17 N 1.47085 * 108.51968 * 53.82976 * 16 15 14 18 18 C 1.36943 * 120.87943 * 128.79060 * 17 16 15 19 19 H 1.07999 * 119.99657 * 206.59025 * 18 17 16 20 20 C 1.38807 * 119.99782 * 26.59509 * 18 17 16 21 21 N 1.31618 * 120.00188 * 17.00985 * 20 18 17 22 22 Si 1.86799 * 119.99686 * 197.00832 * 20 18 17 23 23 H 1.48500 * 109.47237 * 90.00245 * 22 20 18 24 24 H 1.48506 * 109.47030 * 209.99713 * 22 20 18 25 25 H 1.48496 * 109.47404 * 330.00045 * 22 20 18 26 26 C 1.47074 * 118.23733 * 308.81809 * 17 16 15 27 27 C 1.46896 * 111.00297 * 45.69555 * 14 13 12 28 28 N 1.31491 * 119.55142 * 95.28872 * 4 2 1 29 29 H 1.09000 * 109.47599 * 59.99720 * 1 2 3 30 30 H 1.09002 * 109.47449 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46992 * 299.99664 * 1 2 3 32 32 H 1.09002 * 109.46992 * 240.00336 * 2 1 3 33 33 H 1.09004 * 109.47310 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47260 * 300.00177 * 3 2 1 35 35 H 1.08997 * 109.47153 * 60.00520 * 3 2 1 36 36 H 1.07997 * 120.32935 * 0.03966 * 5 4 2 37 37 H 1.07995 * 120.75656 * 179.97438 * 6 5 4 38 38 H 1.07994 * 120.47161 * 180.02562 * 7 6 5 39 39 H 0.97002 * 119.99728 * 359.97438 * 11 9 8 40 40 H 1.09000 * 109.47402 * 59.99765 * 12 11 9 41 41 H 1.08997 * 109.46802 * 299.99575 * 12 11 9 42 42 H 1.09000 * 109.47106 * 59.99703 * 13 12 11 43 43 H 1.09000 * 109.46810 * 299.99999 * 13 12 11 44 44 H 1.09004 * 109.48987 * 52.78650 * 15 14 13 45 45 H 1.08997 * 109.49438 * 292.71233 * 15 14 13 46 46 H 1.08997 * 109.63057 * 173.53707 * 16 15 14 47 47 H 1.09002 * 109.63037 * 293.92905 * 16 15 14 48 48 H 0.97006 * 119.99914 * 179.97438 * 21 20 18 49 49 H 1.09005 * 109.63035 * 170.89170 * 26 17 16 50 50 H 1.08997 * 109.62936 * 291.46961 * 26 17 16 51 51 H 1.09005 * 109.49472 * 67.29128 * 27 14 13 52 52 H 1.09000 * 109.49394 * 307.21848 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 2.1612 -0.0100 2.4194 6 6 2.6241 -0.6673 3.5483 7 6 2.9445 -2.0122 3.4456 8 6 2.7903 -2.6526 2.2186 9 6 3.1278 -4.0899 2.0925 10 8 3.5367 -4.7048 3.0574 11 7 2.9812 -4.7150 0.9075 12 6 3.3143 -6.1362 0.7830 13 6 3.0591 -6.5958 -0.6539 14 7 3.3937 -8.0207 -0.7789 15 6 2.9423 -8.5562 -2.0702 16 6 3.4662 -9.9864 -2.2376 17 7 3.0614 -10.7729 -1.0625 18 6 2.4245 -11.9764 -1.2076 19 1 1.7676 -12.3369 -0.4299 20 6 2.6232 -12.7329 -2.3543 21 7 3.6503 -12.4823 -3.1383 22 14 1.4331 -14.1069 -2.7847 23 1 0.3384 -13.5668 -3.6304 24 1 2.1538 -15.1713 -3.5283 25 1 0.8608 -14.6749 -1.5376 26 6 3.3583 -10.2321 0.2726 27 6 2.8387 -8.7921 0.3412 28 7 2.3480 -1.9851 1.1598 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8932 -0.5138 -0.8900 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 1.9031 1.0376 2.4659 37 1 2.7336 -0.1435 4.4864 38 1 3.3077 -2.5558 4.3052 39 1 2.6544 -4.2241 0.1373 40 1 2.6930 -6.7162 1.4654 41 1 4.3649 -6.2862 1.0316 42 1 3.6801 -6.0159 -1.3366 43 1 2.0084 -6.4458 -0.9021 44 1 3.3257 -7.9316 -2.8770 45 1 1.8527 -8.5620 -2.1007 46 1 3.0411 -10.4290 -3.1385 47 1 4.5534 -9.9714 -2.3149 48 1 3.7893 -13.0112 -3.9395 49 1 2.8619 -10.8370 1.0315 50 1 4.4353 -10.2410 0.4401 51 1 1.7505 -8.7947 0.2773 52 1 3.1469 -8.3387 1.2832 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752367178.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:43 Heat of formation + Delta-G solvation = 6.140942 kcal Electronic energy + Delta-G solvation = -29736.644409 eV Core-core repulsion = 25735.782582 eV Total energy + Delta-G solvation = -4000.861827 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.81460 -40.44306 -39.71118 -36.98188 -36.45390 -35.50245 -33.73071 -33.20982 -31.88667 -31.39870 -30.08642 -28.09911 -27.74485 -25.74951 -25.03898 -24.87260 -24.16763 -22.73863 -22.14487 -21.08466 -20.78467 -18.99301 -18.71575 -17.93180 -17.20696 -17.00329 -16.86024 -16.71471 -15.99782 -15.97670 -15.80842 -15.62959 -15.33086 -15.28400 -15.09281 -14.90288 -14.71048 -14.67819 -14.12899 -14.07229 -13.62640 -13.30702 -13.16703 -13.04245 -13.01186 -12.79369 -12.63190 -12.47724 -12.44028 -12.30148 -12.06074 -12.05060 -11.92048 -11.80106 -11.53507 -11.50976 -11.37501 -10.94628 -10.60060 -10.54733 -10.29996 -9.97990 -9.32522 -8.69982 -7.88508 -5.33403 -0.41006 0.20553 1.46349 1.47193 1.56661 1.62325 1.88443 2.50044 2.78209 2.85976 3.08315 3.26642 3.56175 3.65906 3.73137 3.82502 3.98636 4.00645 4.05118 4.17108 4.26616 4.29612 4.31143 4.32630 4.38910 4.45052 4.54290 4.59151 4.67575 4.75314 4.81492 4.83951 4.84881 4.90167 4.97302 4.99011 5.00466 5.02515 5.11651 5.16514 5.24292 5.26803 5.35420 5.38791 5.43548 5.60103 5.60388 5.67767 6.09887 6.16659 6.30500 6.36397 6.76074 7.03734 7.12300 7.82332 8.36904 9.18405 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020269 B = 0.001782 C = 0.001698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.091833 B =15705.371433 C =16490.872156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.047 4.047 3 C -0.145 4.145 4 C 0.124 3.876 5 C -0.138 4.138 6 C -0.072 4.072 7 C -0.127 4.127 8 C 0.058 3.942 9 C 0.566 3.434 10 O -0.569 6.569 11 N -0.698 5.698 12 C 0.123 3.877 13 C 0.054 3.946 14 N -0.538 5.538 15 C 0.053 3.947 16 C 0.184 3.816 17 N -0.614 5.614 18 C -0.265 4.265 19 H 0.067 0.933 20 C -0.052 4.052 21 N -0.935 5.935 22 Si 0.970 3.030 23 H -0.284 1.284 24 H -0.294 1.294 25 H -0.270 1.270 26 C 0.143 3.857 27 C 0.047 3.953 28 N -0.475 5.475 29 H 0.077 0.923 30 H 0.041 0.959 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.175 0.825 37 H 0.178 0.822 38 H 0.145 0.855 39 H 0.418 0.582 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.094 0.906 43 H 0.044 0.956 44 H 0.086 0.914 45 H 0.023 0.977 46 H 0.060 0.940 47 H 0.000 1.000 48 H 0.251 0.749 49 H 0.059 0.941 50 H 0.016 0.984 51 H 0.026 0.974 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.575 34.346 9.152 35.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.066 4.066 3 C -0.202 4.202 4 C -0.017 4.017 5 C -0.157 4.157 6 C -0.098 4.098 7 C -0.148 4.148 8 C -0.079 4.079 9 C 0.352 3.648 10 O -0.448 6.448 11 N -0.350 5.350 12 C 0.000 4.000 13 C -0.074 4.074 14 N -0.264 5.264 15 C -0.077 4.077 16 C 0.058 3.942 17 N -0.338 5.338 18 C -0.395 4.395 19 H 0.084 0.916 20 C -0.247 4.247 21 N -0.581 5.581 22 Si 0.798 3.202 23 H -0.211 1.211 24 H -0.220 1.220 25 H -0.195 1.195 26 C 0.018 3.982 27 C -0.082 4.082 28 N -0.187 5.187 29 H 0.096 0.904 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.192 0.808 37 H 0.195 0.805 38 H 0.162 0.838 39 H 0.255 0.745 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.112 0.888 43 H 0.063 0.937 44 H 0.105 0.895 45 H 0.042 0.958 46 H 0.078 0.922 47 H 0.018 0.982 48 H 0.060 0.940 49 H 0.078 0.922 50 H 0.034 0.966 51 H 0.044 0.956 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.800 33.235 8.925 34.746 hybrid contribution -1.051 -0.802 -0.047 1.323 sum -5.850 32.433 8.878 34.131 Atomic orbital electron populations 1.21796 0.92866 1.01723 1.03327 1.20142 0.96665 0.96331 0.93461 1.21925 1.01141 0.93358 1.03781 1.21739 0.94526 0.88788 0.96685 1.22629 0.97765 1.03135 0.92184 1.22039 0.94259 0.92754 1.00714 1.22272 0.98310 0.96468 0.97734 1.20888 1.01794 0.93489 0.91721 1.18256 0.77413 0.86239 0.82867 1.90772 1.47808 1.67200 1.39014 1.45692 1.65698 1.11151 1.12441 1.21419 1.01372 0.80227 0.97025 1.22215 1.00157 0.89186 0.95869 1.61934 1.59909 1.01791 1.02723 1.22601 0.96937 0.97190 0.90922 1.20644 0.95260 0.87724 0.90591 1.44414 1.68374 1.19924 1.01123 1.19537 1.19099 0.96320 1.04501 0.91556 1.25812 0.98569 1.00510 0.99851 1.70191 1.28570 1.43235 1.16122 0.85222 0.78371 0.78530 0.78040 1.21069 1.22046 1.19456 1.21124 0.96977 0.92681 0.87460 1.22607 0.96414 0.94793 0.94381 1.67274 1.10343 1.10384 1.30698 0.90417 0.93946 0.91566 0.90018 0.92707 0.90627 0.90545 0.80757 0.80509 0.83762 0.74455 0.91551 0.91239 0.88777 0.93730 0.89528 0.95847 0.92216 0.98227 0.94001 0.92213 0.96583 0.95620 0.88927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.18 71.98 0.66 -0.52 16 2 C -0.05 -0.45 3.23 -11.54 -0.04 -0.49 16 3 C -0.14 -0.72 8.62 71.98 0.62 -0.10 16 4 C 0.12 1.73 5.79 42.70 0.25 1.97 16 5 C -0.14 -1.28 9.18 22.44 0.21 -1.07 16 6 C -0.07 -0.74 10.17 22.45 0.23 -0.51 16 7 C -0.13 -2.23 9.63 22.61 0.22 -2.01 16 8 C 0.06 1.29 6.75 41.89 0.28 1.57 16 9 C 0.57 15.33 7.81 86.88 0.68 16.01 16 10 O -0.57 -18.96 16.32 -3.74 -0.06 -19.02 16 11 N -0.70 -16.76 5.55 -465.67 -2.58 -19.34 16 12 C 0.12 3.25 4.92 86.38 0.43 3.67 16 13 C 0.05 1.41 5.38 86.30 0.46 1.88 16 14 N -0.54 -18.76 4.78 -895.28 -4.28 -23.03 16 15 C 0.05 2.04 5.58 86.38 0.48 2.52 16 16 C 0.18 9.22 5.42 86.35 0.47 9.69 16 17 N -0.61 -32.35 3.04 -698.15 -2.12 -34.47 16 18 C -0.26 -15.02 9.63 84.03 0.81 -14.21 16 19 H 0.07 3.67 7.88 -2.91 -0.02 3.65 16 20 C -0.05 -2.98 4.93 84.86 0.42 -2.56 16 21 N -0.94 -56.38 11.15 21.65 0.24 -56.14 16 22 Si 0.97 45.69 29.59 68.60 2.03 47.71 16 23 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 24 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 25 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 26 C 0.14 6.35 6.69 86.35 0.58 6.93 16 27 C 0.05 1.71 5.04 86.38 0.44 2.14 16 28 N -0.47 -9.31 9.45 -173.07 -1.64 -10.94 16 29 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 34 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 35 H 0.08 0.13 6.48 -2.39 -0.02 0.12 16 36 H 0.18 0.40 6.30 -2.91 -0.02 0.39 16 37 H 0.18 0.54 8.06 -2.91 -0.02 0.51 16 38 H 0.14 2.57 7.64 -2.91 -0.02 2.55 16 39 H 0.42 8.55 7.80 -92.71 -0.72 7.82 16 40 H 0.07 1.88 6.18 -2.39 -0.01 1.87 16 41 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.04 1.12 8.08 -2.39 -0.02 1.10 16 44 H 0.09 2.91 8.11 -2.38 -0.02 2.89 16 45 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.06 3.32 6.12 -2.39 -0.01 3.31 16 47 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 48 H 0.25 14.58 8.31 -92.70 -0.77 13.81 16 49 H 0.06 2.54 7.95 -2.38 -0.02 2.53 16 50 H 0.02 0.74 8.14 -2.39 -0.02 0.73 16 51 H 0.03 0.95 8.14 -2.38 -0.02 0.93 16 52 H 0.09 2.94 5.73 -2.39 -0.01 2.92 16 Total: -1.00 -73.26 411.51 -1.03 -74.30 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 0.19 Total: 16.05 kcal Atomic # 6 Polarization: 17.71 SS G_CDS: 7.19 Total: 24.90 kcal Atomic # 7 Polarization: -133.56 SS G_CDS: -10.38 Total: -143.93 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.06 Total: -19.02 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Total: -73.26 -1.03 -74.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752367178.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.437 kcal (2) G-P(sol) polarization free energy of solvation -73.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds