Wall clock time and date at job start Wed Apr 1 2020 04:35:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 C 1.52997 * 109.47369 * 2 1
4 4 C 1.50703 * 109.47569 * 120.00640 * 2 1 3
5 5 C 1.38607 * 119.54299 * 274.99853 * 4 2 1
6 6 C 1.38587 * 119.34853 * 180.02562 * 5 4 2
7 7 C 1.38637 * 118.48827 * 0.02562 * 6 5 4
8 8 C 1.39271 * 119.06003 * 359.97438 * 7 6 5
9 9 C 1.48170 * 119.72075 * 180.02562 * 8 7 6
10 10 O 1.21508 * 119.99939 * 0.02562 * 9 8 7
11 11 N 1.34779 * 119.99808 * 180.02562 * 9 8 7
12 12 C 1.46497 * 119.99868 * 180.02562 * 11 9 8
13 13 C 1.53004 * 109.47064 * 179.97438 * 12 11 9
14 14 N 1.46898 * 109.47128 * 179.97438 * 13 12 11
15 15 C 1.46898 * 111.00219 * 169.99790 * 14 13 12
16 16 C 1.53233 * 109.34305 * 172.74287 * 15 14 13
17 17 N 1.47085 * 108.51968 * 53.82976 * 16 15 14
18 18 C 1.36943 * 120.87943 * 128.79060 * 17 16 15
19 19 H 1.07999 * 119.99657 * 206.59025 * 18 17 16
20 20 C 1.38807 * 119.99782 * 26.59509 * 18 17 16
21 21 N 1.31618 * 120.00188 * 17.00985 * 20 18 17
22 22 Si 1.86799 * 119.99686 * 197.00832 * 20 18 17
23 23 H 1.48500 * 109.47237 * 90.00245 * 22 20 18
24 24 H 1.48506 * 109.47030 * 209.99713 * 22 20 18
25 25 H 1.48496 * 109.47404 * 330.00045 * 22 20 18
26 26 C 1.47074 * 118.23733 * 308.81809 * 17 16 15
27 27 C 1.46896 * 111.00297 * 45.69555 * 14 13 12
28 28 N 1.31491 * 119.55142 * 95.28872 * 4 2 1
29 29 H 1.09000 * 109.47599 * 59.99720 * 1 2 3
30 30 H 1.09002 * 109.47449 * 179.97438 * 1 2 3
31 31 H 1.09002 * 109.46992 * 299.99664 * 1 2 3
32 32 H 1.09002 * 109.46992 * 240.00336 * 2 1 3
33 33 H 1.09004 * 109.47310 * 180.02562 * 3 2 1
34 34 H 1.09000 * 109.47260 * 300.00177 * 3 2 1
35 35 H 1.08997 * 109.47153 * 60.00520 * 3 2 1
36 36 H 1.07997 * 120.32935 * 0.03966 * 5 4 2
37 37 H 1.07995 * 120.75656 * 179.97438 * 6 5 4
38 38 H 1.07994 * 120.47161 * 180.02562 * 7 6 5
39 39 H 0.97002 * 119.99728 * 359.97438 * 11 9 8
40 40 H 1.09000 * 109.47402 * 59.99765 * 12 11 9
41 41 H 1.08997 * 109.46802 * 299.99575 * 12 11 9
42 42 H 1.09000 * 109.47106 * 59.99703 * 13 12 11
43 43 H 1.09000 * 109.46810 * 299.99999 * 13 12 11
44 44 H 1.09004 * 109.48987 * 52.78650 * 15 14 13
45 45 H 1.08997 * 109.49438 * 292.71233 * 15 14 13
46 46 H 1.08997 * 109.63057 * 173.53707 * 16 15 14
47 47 H 1.09002 * 109.63037 * 293.92905 * 16 15 14
48 48 H 0.97006 * 119.99914 * 179.97438 * 21 20 18
49 49 H 1.09005 * 109.63035 * 170.89170 * 26 17 16
50 50 H 1.08997 * 109.62936 * 291.46961 * 26 17 16
51 51 H 1.09005 * 109.49472 * 67.29128 * 27 14 13
52 52 H 1.09000 * 109.49394 * 307.21848 * 27 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 2.0324 -0.7105 1.2304
5 6 2.1612 -0.0100 2.4194
6 6 2.6241 -0.6673 3.5483
7 6 2.9445 -2.0122 3.4456
8 6 2.7903 -2.6526 2.2186
9 6 3.1278 -4.0899 2.0925
10 8 3.5367 -4.7048 3.0574
11 7 2.9812 -4.7150 0.9075
12 6 3.3143 -6.1362 0.7830
13 6 3.0591 -6.5958 -0.6539
14 7 3.3937 -8.0207 -0.7789
15 6 2.9423 -8.5562 -2.0702
16 6 3.4662 -9.9864 -2.2376
17 7 3.0614 -10.7729 -1.0625
18 6 2.4245 -11.9764 -1.2076
19 1 1.7676 -12.3369 -0.4299
20 6 2.6232 -12.7329 -2.3543
21 7 3.6503 -12.4823 -3.1383
22 14 1.4331 -14.1069 -2.7847
23 1 0.3384 -13.5668 -3.6304
24 1 2.1538 -15.1713 -3.5283
25 1 0.8608 -14.6749 -1.5376
26 6 3.3583 -10.2321 0.2726
27 6 2.8387 -8.7921 0.3412
28 7 2.3480 -1.9851 1.1598
29 1 -0.3634 0.5139 -0.8899
30 1 -0.3634 -1.0277 -0.0005
31 1 -0.3633 0.5138 0.8900
32 1 1.8932 -0.5138 -0.8900
33 1 3.1300 1.4424 -0.0005
34 1 1.6767 1.9563 -0.8900
35 1 1.6768 1.9563 0.8900
36 1 1.9031 1.0376 2.4659
37 1 2.7336 -0.1435 4.4864
38 1 3.3077 -2.5558 4.3052
39 1 2.6544 -4.2241 0.1373
40 1 2.6930 -6.7162 1.4654
41 1 4.3649 -6.2862 1.0316
42 1 3.6801 -6.0159 -1.3366
43 1 2.0084 -6.4458 -0.9021
44 1 3.3257 -7.9316 -2.8770
45 1 1.8527 -8.5620 -2.1007
46 1 3.0411 -10.4290 -3.1385
47 1 4.5534 -9.9714 -2.3149
48 1 3.7893 -13.0112 -3.9395
49 1 2.8619 -10.8370 1.0315
50 1 4.4353 -10.2410 0.4401
51 1 1.7505 -8.7947 0.2773
52 1 3.1469 -8.3387 1.2832
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001752367178.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:35:43
Heat of formation + Delta-G solvation = 6.140942 kcal
Electronic energy + Delta-G solvation = -29736.644409 eV
Core-core repulsion = 25735.782582 eV
Total energy + Delta-G solvation = -4000.861827 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 346.211 amu
Computer time = 1.19 seconds
Orbital eigenvalues (eV)
-41.81460 -40.44306 -39.71118 -36.98188 -36.45390 -35.50245 -33.73071 -33.20982
-31.88667 -31.39870 -30.08642 -28.09911 -27.74485 -25.74951 -25.03898 -24.87260
-24.16763 -22.73863 -22.14487 -21.08466 -20.78467 -18.99301 -18.71575 -17.93180
-17.20696 -17.00329 -16.86024 -16.71471 -15.99782 -15.97670 -15.80842 -15.62959
-15.33086 -15.28400 -15.09281 -14.90288 -14.71048 -14.67819 -14.12899 -14.07229
-13.62640 -13.30702 -13.16703 -13.04245 -13.01186 -12.79369 -12.63190 -12.47724
-12.44028 -12.30148 -12.06074 -12.05060 -11.92048 -11.80106 -11.53507 -11.50976
-11.37501 -10.94628 -10.60060 -10.54733 -10.29996 -9.97990 -9.32522 -8.69982
-7.88508 -5.33403 -0.41006 0.20553 1.46349 1.47193 1.56661 1.62325
1.88443 2.50044 2.78209 2.85976 3.08315 3.26642 3.56175 3.65906
3.73137 3.82502 3.98636 4.00645 4.05118 4.17108 4.26616 4.29612
4.31143 4.32630 4.38910 4.45052 4.54290 4.59151 4.67575 4.75314
4.81492 4.83951 4.84881 4.90167 4.97302 4.99011 5.00466 5.02515
5.11651 5.16514 5.24292 5.26803 5.35420 5.38791 5.43548 5.60103
5.60388 5.67767 6.09887 6.16659 6.30500 6.36397 6.76074 7.03734
7.12300 7.82332 8.36904 9.18405
Molecular weight = 346.21amu
Principal moments of inertia in cm(-1)
A = 0.020269 B = 0.001782 C = 0.001698
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1381.091833 B =15705.371433 C =16490.872156
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.047 4.047
3 C -0.145 4.145
4 C 0.124 3.876
5 C -0.138 4.138
6 C -0.072 4.072
7 C -0.127 4.127
8 C 0.058 3.942
9 C 0.566 3.434
10 O -0.569 6.569
11 N -0.698 5.698
12 C 0.123 3.877
13 C 0.054 3.946
14 N -0.538 5.538
15 C 0.053 3.947
16 C 0.184 3.816
17 N -0.614 5.614
18 C -0.265 4.265
19 H 0.067 0.933
20 C -0.052 4.052
21 N -0.935 5.935
22 Si 0.970 3.030
23 H -0.284 1.284
24 H -0.294 1.294
25 H -0.270 1.270
26 C 0.143 3.857
27 C 0.047 3.953
28 N -0.475 5.475
29 H 0.077 0.923
30 H 0.041 0.959
31 H 0.065 0.935
32 H 0.081 0.919
33 H 0.054 0.946
34 H 0.075 0.925
35 H 0.076 0.924
36 H 0.175 0.825
37 H 0.178 0.822
38 H 0.145 0.855
39 H 0.418 0.582
40 H 0.066 0.934
41 H 0.069 0.931
42 H 0.094 0.906
43 H 0.044 0.956
44 H 0.086 0.914
45 H 0.023 0.977
46 H 0.060 0.940
47 H 0.000 1.000
48 H 0.251 0.749
49 H 0.059 0.941
50 H 0.016 0.984
51 H 0.026 0.974
52 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.575 34.346 9.152 35.979
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.066 4.066
3 C -0.202 4.202
4 C -0.017 4.017
5 C -0.157 4.157
6 C -0.098 4.098
7 C -0.148 4.148
8 C -0.079 4.079
9 C 0.352 3.648
10 O -0.448 6.448
11 N -0.350 5.350
12 C 0.000 4.000
13 C -0.074 4.074
14 N -0.264 5.264
15 C -0.077 4.077
16 C 0.058 3.942
17 N -0.338 5.338
18 C -0.395 4.395
19 H 0.084 0.916
20 C -0.247 4.247
21 N -0.581 5.581
22 Si 0.798 3.202
23 H -0.211 1.211
24 H -0.220 1.220
25 H -0.195 1.195
26 C 0.018 3.982
27 C -0.082 4.082
28 N -0.187 5.187
29 H 0.096 0.904
30 H 0.061 0.939
31 H 0.084 0.916
32 H 0.100 0.900
33 H 0.073 0.927
34 H 0.094 0.906
35 H 0.095 0.905
36 H 0.192 0.808
37 H 0.195 0.805
38 H 0.162 0.838
39 H 0.255 0.745
40 H 0.084 0.916
41 H 0.088 0.912
42 H 0.112 0.888
43 H 0.063 0.937
44 H 0.105 0.895
45 H 0.042 0.958
46 H 0.078 0.922
47 H 0.018 0.982
48 H 0.060 0.940
49 H 0.078 0.922
50 H 0.034 0.966
51 H 0.044 0.956
52 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges -4.800 33.235 8.925 34.746
hybrid contribution -1.051 -0.802 -0.047 1.323
sum -5.850 32.433 8.878 34.131
Atomic orbital electron populations
1.21796 0.92866 1.01723 1.03327 1.20142 0.96665 0.96331 0.93461
1.21925 1.01141 0.93358 1.03781 1.21739 0.94526 0.88788 0.96685
1.22629 0.97765 1.03135 0.92184 1.22039 0.94259 0.92754 1.00714
1.22272 0.98310 0.96468 0.97734 1.20888 1.01794 0.93489 0.91721
1.18256 0.77413 0.86239 0.82867 1.90772 1.47808 1.67200 1.39014
1.45692 1.65698 1.11151 1.12441 1.21419 1.01372 0.80227 0.97025
1.22215 1.00157 0.89186 0.95869 1.61934 1.59909 1.01791 1.02723
1.22601 0.96937 0.97190 0.90922 1.20644 0.95260 0.87724 0.90591
1.44414 1.68374 1.19924 1.01123 1.19537 1.19099 0.96320 1.04501
0.91556 1.25812 0.98569 1.00510 0.99851 1.70191 1.28570 1.43235
1.16122 0.85222 0.78371 0.78530 0.78040 1.21069 1.22046 1.19456
1.21124 0.96977 0.92681 0.87460 1.22607 0.96414 0.94793 0.94381
1.67274 1.10343 1.10384 1.30698 0.90417 0.93946 0.91566 0.90018
0.92707 0.90627 0.90545 0.80757 0.80509 0.83762 0.74455 0.91551
0.91239 0.88777 0.93730 0.89528 0.95847 0.92216 0.98227 0.94001
0.92213 0.96583 0.95620 0.88927
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.18 9.18 71.98 0.66 -0.52 16
2 C -0.05 -0.45 3.23 -11.54 -0.04 -0.49 16
3 C -0.14 -0.72 8.62 71.98 0.62 -0.10 16
4 C 0.12 1.73 5.79 42.70 0.25 1.97 16
5 C -0.14 -1.28 9.18 22.44 0.21 -1.07 16
6 C -0.07 -0.74 10.17 22.45 0.23 -0.51 16
7 C -0.13 -2.23 9.63 22.61 0.22 -2.01 16
8 C 0.06 1.29 6.75 41.89 0.28 1.57 16
9 C 0.57 15.33 7.81 86.88 0.68 16.01 16
10 O -0.57 -18.96 16.32 -3.74 -0.06 -19.02 16
11 N -0.70 -16.76 5.55 -465.67 -2.58 -19.34 16
12 C 0.12 3.25 4.92 86.38 0.43 3.67 16
13 C 0.05 1.41 5.38 86.30 0.46 1.88 16
14 N -0.54 -18.76 4.78 -895.28 -4.28 -23.03 16
15 C 0.05 2.04 5.58 86.38 0.48 2.52 16
16 C 0.18 9.22 5.42 86.35 0.47 9.69 16
17 N -0.61 -32.35 3.04 -698.15 -2.12 -34.47 16
18 C -0.26 -15.02 9.63 84.03 0.81 -14.21 16
19 H 0.07 3.67 7.88 -2.91 -0.02 3.65 16
20 C -0.05 -2.98 4.93 84.86 0.42 -2.56 16
21 N -0.94 -56.38 11.15 21.65 0.24 -56.14 16
22 Si 0.97 45.69 29.59 68.60 2.03 47.71 16
23 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16
24 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16
25 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16
26 C 0.14 6.35 6.69 86.35 0.58 6.93 16
27 C 0.05 1.71 5.04 86.38 0.44 2.14 16
28 N -0.47 -9.31 9.45 -173.07 -1.64 -10.94 16
29 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16
30 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16
31 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16
32 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16
33 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16
34 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16
35 H 0.08 0.13 6.48 -2.39 -0.02 0.12 16
36 H 0.18 0.40 6.30 -2.91 -0.02 0.39 16
37 H 0.18 0.54 8.06 -2.91 -0.02 0.51 16
38 H 0.14 2.57 7.64 -2.91 -0.02 2.55 16
39 H 0.42 8.55 7.80 -92.71 -0.72 7.82 16
40 H 0.07 1.88 6.18 -2.39 -0.01 1.87 16
41 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16
42 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16
43 H 0.04 1.12 8.08 -2.39 -0.02 1.10 16
44 H 0.09 2.91 8.11 -2.38 -0.02 2.89 16
45 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16
46 H 0.06 3.32 6.12 -2.39 -0.01 3.31 16
47 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16
48 H 0.25 14.58 8.31 -92.70 -0.77 13.81 16
49 H 0.06 2.54 7.95 -2.38 -0.02 2.53 16
50 H 0.02 0.74 8.14 -2.39 -0.02 0.73 16
51 H 0.03 0.95 8.14 -2.38 -0.02 0.93 16
52 H 0.09 2.94 5.73 -2.39 -0.01 2.92 16
Total: -1.00 -73.26 411.51 -1.03 -74.30
By element:
Atomic # 1 Polarization: 15.86 SS G_CDS: 0.19 Total: 16.05 kcal
Atomic # 6 Polarization: 17.71 SS G_CDS: 7.19 Total: 24.90 kcal
Atomic # 7 Polarization: -133.56 SS G_CDS: -10.38 Total: -143.93 kcal
Atomic # 8 Polarization: -18.96 SS G_CDS: -0.06 Total: -19.02 kcal
Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal
Total: -73.26 -1.03 -74.30 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001752367178.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 80.437 kcal
(2) G-P(sol) polarization free energy of solvation -73.265 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.172 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.031 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.296 kcal
(6) G-S(sol) free energy of system = (1) + (5) 6.141 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.19 seconds