Wall clock time and date at job start Wed Apr 1 2020 04:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47099 * 2 1 4 4 C 1.50693 * 109.47072 * 120.00870 * 2 1 3 5 5 N 1.32170 * 120.53554 * 309.69992 * 4 2 1 6 6 C 1.31856 * 120.96914 * 179.97438 * 5 4 2 7 7 N 1.31889 * 122.09322 * 359.97438 * 6 5 4 8 8 C 1.32129 * 120.96525 * 359.70995 * 7 6 5 9 9 C 1.39925 * 120.54220 * 129.68697 * 4 2 1 10 10 C 1.47833 * 120.93786 * 0.02562 * 9 4 2 11 11 O 1.21551 * 120.00249 * 37.02632 * 10 9 4 12 12 N 1.34776 * 119.99831 * 217.02958 * 10 9 4 13 13 C 1.46504 * 119.99770 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.46810 * 324.99376 * 13 12 10 15 15 C 1.52999 * 109.47234 * 84.99841 * 13 12 10 16 16 C 1.53005 * 109.47017 * 179.97438 * 15 13 12 17 17 C 1.52998 * 109.47295 * 300.00109 * 16 15 13 18 18 H 1.08998 * 109.47087 * 300.00215 * 17 16 15 19 19 C 1.52993 * 109.47047 * 179.97438 * 17 16 15 20 20 N 1.46500 * 109.46986 * 174.99980 * 19 17 16 21 21 C 1.36946 * 120.00074 * 179.97438 * 20 19 17 22 22 H 1.07997 * 119.99475 * 0.02562 * 21 20 19 23 23 C 1.38811 * 120.00146 * 179.97438 * 21 20 19 24 24 N 1.31622 * 119.99995 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 119.99999 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47323 * 59.99977 * 25 23 21 27 27 H 1.48501 * 109.47348 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47349 * 300.00102 * 25 23 21 29 29 C 1.53003 * 109.47106 * 59.99631 * 17 16 15 30 30 C 1.52996 * 109.47318 * 300.00452 * 29 17 16 31 31 H 1.09005 * 109.46984 * 299.99693 * 1 2 3 32 32 H 1.09001 * 109.46973 * 59.99623 * 1 2 3 33 33 H 1.08996 * 109.47532 * 179.97438 * 1 2 3 34 34 H 1.09005 * 109.46487 * 240.00483 * 2 1 3 35 35 H 1.09004 * 109.47048 * 180.02562 * 3 2 1 36 36 H 1.09001 * 109.47516 * 300.00045 * 3 2 1 37 37 H 1.08996 * 109.47306 * 60.00748 * 3 2 1 38 38 H 1.07994 * 118.94853 * 179.97438 * 6 5 4 39 39 H 1.08007 * 120.53710 * 180.30628 * 8 7 6 40 40 H 0.96999 * 120.00055 * 359.97438 * 12 10 9 41 41 H 1.08998 * 109.46927 * 59.99709 * 15 13 12 42 42 H 1.08998 * 109.47031 * 299.99789 * 15 13 12 43 43 H 1.08993 * 109.46962 * 179.97438 * 16 15 13 44 44 H 1.09000 * 109.46637 * 59.99773 * 16 15 13 45 45 H 1.09008 * 109.47070 * 294.99672 * 19 17 16 46 46 H 1.09000 * 109.47408 * 54.99870 * 19 17 16 47 47 H 0.96998 * 120.00632 * 0.02562 * 20 19 17 48 48 H 0.96998 * 119.99822 * 180.02562 * 24 23 21 49 49 H 1.09005 * 109.47034 * 60.00362 * 29 17 16 50 50 H 1.08998 * 109.46959 * 180.02562 * 29 17 16 51 51 H 1.09006 * 109.47252 * 180.02562 * 30 29 17 52 52 H 1.09003 * 109.46900 * 299.99165 * 30 29 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7106 1.2303 5 7 1.5706 -0.3900 2.4265 6 6 2.0037 -1.0064 3.5086 7 7 2.9090 -1.9640 3.4546 8 6 3.4199 -2.3521 2.2995 9 6 2.9949 -1.7206 1.1249 10 6 3.5421 -2.1147 -0.1907 11 8 3.7394 -1.2720 -1.0441 12 7 3.8221 -3.4085 -0.4439 13 6 4.3639 -3.7991 -1.7478 14 1 3.9284 -3.1711 -2.5250 15 6 5.8837 -3.6235 -1.7420 16 6 6.4495 -4.0320 -3.1036 17 6 6.1065 -5.4973 -3.3796 18 1 6.5418 -6.1250 -2.6021 19 6 6.6718 -5.9056 -4.7414 20 7 6.4480 -7.3378 -4.9535 21 6 6.8717 -7.9329 -6.1118 22 1 7.3711 -7.3464 -6.8687 23 6 6.6601 -9.2900 -6.3126 24 7 6.0518 -10.0048 -5.3898 25 14 7.2387 -10.1019 -7.8922 26 1 8.7100 -9.9456 -8.0191 27 1 6.8958 -11.5464 -7.8608 28 1 6.5709 -9.4592 -9.0525 29 6 4.5866 -5.6730 -3.3853 30 6 4.0209 -5.2644 -2.0238 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 3.1300 1.4424 -0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6768 1.9562 0.8900 38 1 1.6044 -0.7180 4.4697 39 1 4.1574 -3.1404 2.2628 40 1 3.6650 -4.0810 0.2373 41 1 6.3191 -4.2515 -0.9647 42 1 6.1281 -2.5797 -1.5450 43 1 7.5322 -3.9065 -3.0996 44 1 6.0141 -3.4043 -3.8811 45 1 6.1713 -5.3394 -5.5271 46 1 7.7413 -5.6971 -4.7683 47 1 5.9990 -7.8645 -4.2739 48 1 5.9043 -10.9532 -5.5299 49 1 4.1512 -5.0453 -4.1629 50 1 4.3423 -6.7170 -3.5815 51 1 2.9381 -5.3900 -2.0277 52 1 4.4562 -5.8922 -1.2463 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754957792.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:30 Heat of formation + Delta-G solvation = -6.666912 kcal Electronic energy + Delta-G solvation = -30255.354653 eV Core-core repulsion = 26253.937436 eV Total energy + Delta-G solvation = -4001.417217 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 5.30 seconds Orbital eigenvalues (eV) -41.84051 -40.03594 -38.36362 -36.51948 -35.24527 -33.90768 -33.41292 -32.23644 -31.15827 -30.70326 -29.00852 -27.45510 -25.94660 -25.38951 -24.68395 -23.07518 -22.33360 -21.31413 -21.23733 -20.63506 -19.69142 -18.32913 -18.01325 -17.18513 -17.07685 -16.42849 -15.59734 -15.13624 -15.07000 -14.78706 -14.64879 -14.44551 -14.25089 -14.10309 -13.92772 -13.84065 -13.44829 -13.25171 -13.16193 -12.52422 -12.48323 -12.16308 -12.11691 -12.05090 -11.91254 -11.77834 -11.66284 -11.36163 -11.11109 -11.03180 -10.98521 -10.87284 -10.79020 -10.38292 -10.18820 -10.12680 -10.11727 -10.03780 -9.85099 -9.73533 -9.57683 -9.22170 -8.84786 -6.89328 -5.75501 -3.03234 0.03901 0.52456 2.33625 2.73463 3.24868 3.44754 3.49038 3.49669 3.50043 3.59394 3.80560 4.20934 4.38230 4.59940 4.65908 4.71154 4.76707 4.79328 4.80872 4.95372 5.03875 5.23414 5.28458 5.31066 5.36617 5.47013 5.51339 5.54437 5.57058 5.58343 5.61182 5.66407 5.67309 5.79252 5.91619 5.93408 5.97494 6.02425 6.06879 6.20489 6.25991 6.26814 6.31188 6.40851 6.41304 6.53933 6.69475 6.86229 6.97341 7.11869 7.52004 7.71220 7.79763 8.44244 9.55113 10.14159 10.48751 11.47513 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022782 B = 0.001837 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.726446 B =15238.258661 C =15565.298536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.063 4.063 3 C -0.132 4.132 4 C 0.239 3.761 5 N -0.516 5.516 6 C 0.313 3.687 7 N -0.525 5.525 8 C 0.183 3.817 9 C -0.240 4.240 10 C 0.568 3.432 11 O -0.519 6.519 12 N -0.716 5.716 13 C 0.145 3.855 14 H 0.091 0.909 15 C -0.125 4.125 16 C -0.108 4.108 17 C -0.095 4.095 18 H 0.070 0.930 19 C 0.157 3.843 20 N -0.732 5.732 21 C -0.237 4.237 22 H 0.069 0.931 23 C -0.016 4.016 24 N -0.935 5.935 25 Si 0.907 3.093 26 H -0.287 1.287 27 H -0.291 1.291 28 H -0.286 1.286 29 C -0.106 4.106 30 C -0.125 4.125 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.111 0.889 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.201 0.799 39 H 0.174 0.826 40 H 0.399 0.601 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.018 0.982 46 H 0.017 0.983 47 H 0.383 0.617 48 H 0.255 0.745 49 H 0.062 0.938 50 H 0.080 0.920 51 H 0.065 0.935 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.962 20.374 18.313 29.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.081 4.081 3 C -0.190 4.190 4 C 0.092 3.908 5 N -0.230 5.230 6 C 0.026 3.974 7 N -0.238 5.238 8 C 0.016 3.984 9 C -0.247 4.247 10 C 0.353 3.647 11 O -0.396 6.396 12 N -0.366 5.366 13 C 0.042 3.958 14 H 0.109 0.891 15 C -0.164 4.164 16 C -0.146 4.146 17 C -0.114 4.114 18 H 0.088 0.912 19 C 0.029 3.971 20 N -0.376 5.376 21 C -0.369 4.369 22 H 0.087 0.913 23 C -0.211 4.211 24 N -0.584 5.584 25 Si 0.738 3.262 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 C -0.144 4.144 30 C -0.163 4.163 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.129 0.871 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.218 0.782 39 H 0.191 0.809 40 H 0.234 0.766 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.036 0.964 46 H 0.035 0.965 47 H 0.217 0.783 48 H 0.065 0.935 49 H 0.080 0.920 50 H 0.099 0.901 51 H 0.084 0.916 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.121 21.212 18.425 29.864 hybrid contribution 0.533 -1.405 -0.879 1.741 sum -9.588 19.807 17.546 28.144 Atomic orbital electron populations 1.21796 0.93228 1.01976 1.02844 1.20528 0.96741 0.97327 0.93554 1.21673 1.01440 0.93525 1.02360 1.21903 0.87084 0.87845 0.93963 1.68323 1.27585 1.28396 0.98652 1.25241 0.87962 0.86583 0.97583 1.68461 1.11519 1.15338 1.28518 1.23503 0.93933 0.94467 0.86520 1.21696 1.03901 1.02581 0.96543 1.17768 0.77864 0.83029 0.86078 1.90788 1.52187 1.49994 1.46651 1.46126 1.65108 1.07689 1.17642 1.21189 0.94069 0.96697 0.83860 0.89084 1.21891 0.94382 1.01478 0.98613 1.21481 1.00679 0.96516 0.95973 1.21352 0.95522 0.95343 0.99138 0.91164 1.20685 0.96684 0.86902 0.92833 1.42378 1.71005 1.03339 1.20912 1.19204 1.30625 0.91788 0.95256 0.91315 1.24727 1.01610 0.96500 0.98296 1.69644 1.47785 1.06880 1.34116 0.86267 0.78353 0.78412 0.83160 1.21330 1.21730 1.21307 1.21482 0.95244 1.02878 0.94767 1.21848 1.01055 0.93790 0.99620 0.91415 0.91672 0.93024 0.87086 0.92331 0.91527 0.92195 0.78223 0.80934 0.76634 0.91821 0.91794 0.91640 0.91762 0.96380 0.96475 0.78283 0.93536 0.91959 0.90131 0.91613 0.91391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.02 37.16 0.34 -0.75 16 2 C -0.06 -0.57 2.72 -91.78 -0.25 -0.82 16 3 C -0.13 -1.12 9.18 37.15 0.34 -0.78 16 4 C 0.24 2.29 5.55 -81.82 -0.45 1.83 16 5 N -0.52 -4.66 9.89 -10.48 -0.10 -4.76 16 6 C 0.31 2.39 12.27 -92.02 -1.13 1.26 16 7 N -0.52 -4.41 10.42 -14.24 -0.15 -4.56 16 8 C 0.18 1.40 10.64 -16.78 -0.18 1.22 16 9 C -0.24 -2.18 5.81 -104.69 -0.61 -2.79 16 10 C 0.57 5.80 6.99 -12.34 -0.09 5.71 16 11 O -0.52 -6.82 14.19 5.32 0.08 -6.75 16 12 N -0.72 -6.13 5.02 -54.75 -0.27 -6.40 16 13 C 0.15 1.51 2.45 -67.93 -0.17 1.34 16 14 H 0.09 1.10 7.58 -51.93 -0.39 0.70 16 15 C -0.13 -1.36 5.50 -26.73 -0.15 -1.51 16 16 C -0.11 -1.36 5.20 -26.73 -0.14 -1.50 16 17 C -0.09 -1.44 2.23 -90.62 -0.20 -1.64 16 18 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 19 C 0.16 3.10 5.65 -4.05 -0.02 3.07 16 20 N -0.73 -18.27 5.33 -59.91 -0.32 -18.59 16 21 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 22 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 23 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 24 N -0.94 -28.08 13.06 55.49 0.72 -27.36 16 25 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 28 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 29 C -0.11 -1.51 5.08 -26.73 -0.14 -1.64 16 30 C -0.13 -1.35 5.39 -26.73 -0.14 -1.49 16 31 H 0.07 0.52 7.92 -51.93 -0.41 0.11 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.11 1.18 5.32 -51.93 -0.28 0.90 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.20 0.84 8.06 -52.49 -0.42 0.41 16 39 H 0.17 0.85 7.78 -52.48 -0.41 0.44 16 40 H 0.40 2.45 7.94 -40.82 -0.32 2.13 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.02 0.37 8.14 -51.92 -0.42 -0.05 16 46 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.38 9.93 6.85 -40.82 -0.28 9.65 16 48 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 49 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 50 H 0.08 1.36 7.18 -51.93 -0.37 0.99 16 51 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 52 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 414.81 15.07 6.25 6.25 Total: -1.00 -32.73 414.81 -10.83 -43.56 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -8.78 Total: 7.02 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -3.23 Total: -5.82 kcal Atomic # 7 Polarization: -61.55 SS G_CDS: -0.12 Total: -61.67 kcal Atomic # 8 Polarization: -6.82 SS G_CDS: 0.08 Total: -6.75 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -32.73 -10.83 -43.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754957792.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.891 kcal (2) G-P(sol) polarization free energy of solvation -32.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.30 seconds