Wall clock time and date at job start Wed Apr 1 2020 04:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47099 * 2 1 4 4 C 1.50693 * 109.47072 * 120.00870 * 2 1 3 5 5 N 1.32170 * 120.53554 * 309.69992 * 4 2 1 6 6 C 1.31856 * 120.96914 * 179.97438 * 5 4 2 7 7 N 1.31889 * 122.09322 * 359.97438 * 6 5 4 8 8 C 1.32129 * 120.96525 * 359.70995 * 7 6 5 9 9 C 1.39925 * 120.54220 * 129.68697 * 4 2 1 10 10 C 1.47833 * 120.93786 * 0.02562 * 9 4 2 11 11 O 1.21551 * 120.00249 * 37.02632 * 10 9 4 12 12 N 1.34776 * 119.99831 * 217.02958 * 10 9 4 13 13 C 1.46504 * 119.99770 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.46810 * 324.99376 * 13 12 10 15 15 C 1.52999 * 109.47234 * 84.99841 * 13 12 10 16 16 C 1.53005 * 109.47017 * 179.97438 * 15 13 12 17 17 C 1.52998 * 109.47295 * 300.00109 * 16 15 13 18 18 H 1.08998 * 109.47087 * 300.00215 * 17 16 15 19 19 C 1.52993 * 109.47047 * 179.97438 * 17 16 15 20 20 N 1.46500 * 109.46986 * 174.99980 * 19 17 16 21 21 C 1.36946 * 120.00074 * 179.97438 * 20 19 17 22 22 H 1.07997 * 119.99475 * 0.02562 * 21 20 19 23 23 C 1.38811 * 120.00146 * 179.97438 * 21 20 19 24 24 N 1.31622 * 119.99995 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 119.99999 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47323 * 59.99977 * 25 23 21 27 27 H 1.48501 * 109.47348 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47349 * 300.00102 * 25 23 21 29 29 C 1.53003 * 109.47106 * 59.99631 * 17 16 15 30 30 C 1.52996 * 109.47318 * 300.00452 * 29 17 16 31 31 H 1.09005 * 109.46984 * 299.99693 * 1 2 3 32 32 H 1.09001 * 109.46973 * 59.99623 * 1 2 3 33 33 H 1.08996 * 109.47532 * 179.97438 * 1 2 3 34 34 H 1.09005 * 109.46487 * 240.00483 * 2 1 3 35 35 H 1.09004 * 109.47048 * 180.02562 * 3 2 1 36 36 H 1.09001 * 109.47516 * 300.00045 * 3 2 1 37 37 H 1.08996 * 109.47306 * 60.00748 * 3 2 1 38 38 H 1.07994 * 118.94853 * 179.97438 * 6 5 4 39 39 H 1.08007 * 120.53710 * 180.30628 * 8 7 6 40 40 H 0.96999 * 120.00055 * 359.97438 * 12 10 9 41 41 H 1.08998 * 109.46927 * 59.99709 * 15 13 12 42 42 H 1.08998 * 109.47031 * 299.99789 * 15 13 12 43 43 H 1.08993 * 109.46962 * 179.97438 * 16 15 13 44 44 H 1.09000 * 109.46637 * 59.99773 * 16 15 13 45 45 H 1.09008 * 109.47070 * 294.99672 * 19 17 16 46 46 H 1.09000 * 109.47408 * 54.99870 * 19 17 16 47 47 H 0.96998 * 120.00632 * 0.02562 * 20 19 17 48 48 H 0.96998 * 119.99822 * 180.02562 * 24 23 21 49 49 H 1.09005 * 109.47034 * 60.00362 * 29 17 16 50 50 H 1.08998 * 109.46959 * 180.02562 * 29 17 16 51 51 H 1.09006 * 109.47252 * 180.02562 * 30 29 17 52 52 H 1.09003 * 109.46900 * 299.99165 * 30 29 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7106 1.2303 5 7 1.5706 -0.3900 2.4265 6 6 2.0037 -1.0064 3.5086 7 7 2.9090 -1.9640 3.4546 8 6 3.4199 -2.3521 2.2995 9 6 2.9949 -1.7206 1.1249 10 6 3.5421 -2.1147 -0.1907 11 8 3.7394 -1.2720 -1.0441 12 7 3.8221 -3.4085 -0.4439 13 6 4.3639 -3.7991 -1.7478 14 1 3.9284 -3.1711 -2.5250 15 6 5.8837 -3.6235 -1.7420 16 6 6.4495 -4.0320 -3.1036 17 6 6.1065 -5.4973 -3.3796 18 1 6.5418 -6.1250 -2.6021 19 6 6.6718 -5.9056 -4.7414 20 7 6.4480 -7.3378 -4.9535 21 6 6.8717 -7.9329 -6.1118 22 1 7.3711 -7.3464 -6.8687 23 6 6.6601 -9.2900 -6.3126 24 7 6.0518 -10.0048 -5.3898 25 14 7.2387 -10.1019 -7.8922 26 1 8.7100 -9.9456 -8.0191 27 1 6.8958 -11.5464 -7.8608 28 1 6.5709 -9.4592 -9.0525 29 6 4.5866 -5.6730 -3.3853 30 6 4.0209 -5.2644 -2.0238 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 3.1300 1.4424 -0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6768 1.9562 0.8900 38 1 1.6044 -0.7180 4.4697 39 1 4.1574 -3.1404 2.2628 40 1 3.6650 -4.0810 0.2373 41 1 6.3191 -4.2515 -0.9647 42 1 6.1281 -2.5797 -1.5450 43 1 7.5322 -3.9065 -3.0996 44 1 6.0141 -3.4043 -3.8811 45 1 6.1713 -5.3394 -5.5271 46 1 7.7413 -5.6971 -4.7683 47 1 5.9990 -7.8645 -4.2739 48 1 5.9043 -10.9532 -5.5299 49 1 4.1512 -5.0453 -4.1629 50 1 4.3423 -6.7170 -3.5815 51 1 2.9381 -5.3900 -2.0277 52 1 4.4562 -5.8922 -1.2463 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754957792.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:28:27 Heat of formation + Delta-G solvation = -26.170009 kcal Electronic energy + Delta-G solvation = -30256.200370 eV Core-core repulsion = 26253.937436 eV Total energy + Delta-G solvation = -4002.262935 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -42.49162 -40.87921 -39.41303 -37.24169 -36.61058 -35.20006 -34.19854 -33.28418 -32.55541 -31.71885 -30.40660 -28.09737 -27.08573 -26.15135 -25.83583 -24.53746 -23.50466 -22.35248 -21.91784 -21.59601 -20.85529 -19.15486 -18.96532 -18.76647 -17.79717 -17.24804 -16.67073 -16.39882 -16.05351 -15.75373 -15.57605 -15.47022 -15.29364 -15.18345 -15.06441 -14.76438 -14.63420 -14.51906 -14.08650 -13.84845 -13.41125 -13.23762 -13.10237 -13.08969 -12.88411 -12.79633 -12.69505 -12.53584 -12.32511 -12.23207 -12.16094 -12.01037 -11.93613 -11.83241 -11.63526 -11.44452 -11.31233 -11.11677 -10.88241 -10.81976 -10.73145 -10.36196 -10.05845 -8.96496 -7.93990 -5.21676 -0.59074 -0.10196 1.47419 1.50165 1.56287 1.57849 1.96870 2.56990 2.62374 2.88439 3.07596 3.21269 3.39093 3.51999 3.71120 3.73771 3.79543 3.91522 4.05974 4.07064 4.14549 4.16575 4.23615 4.39867 4.43955 4.47694 4.54213 4.58976 4.60136 4.63409 4.75641 4.82247 4.87838 4.90877 4.95412 5.05384 5.07022 5.10481 5.14811 5.18355 5.23361 5.24657 5.26707 5.33358 5.36901 5.45485 5.48511 5.55708 5.63169 5.78758 6.29086 6.40916 6.91451 7.06551 7.35458 8.12888 8.36851 9.29241 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022782 B = 0.001837 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.726446 B =15238.258661 C =15565.298536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.064 4.064 3 C -0.127 4.127 4 C 0.228 3.772 5 N -0.528 5.528 6 C 0.313 3.687 7 N -0.536 5.536 8 C 0.190 3.810 9 C -0.251 4.251 10 C 0.572 3.428 11 O -0.552 6.552 12 N -0.702 5.702 13 C 0.154 3.846 14 H 0.075 0.925 15 C -0.117 4.117 16 C -0.101 4.101 17 C -0.083 4.083 18 H 0.067 0.933 19 C 0.153 3.847 20 N -0.742 5.742 21 C -0.247 4.247 22 H 0.072 0.928 23 C -0.075 4.075 24 N -0.968 5.968 25 Si 0.972 3.028 26 H -0.279 1.279 27 H -0.294 1.294 28 H -0.279 1.279 29 C -0.102 4.102 30 C -0.113 4.113 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.047 0.953 34 H 0.095 0.905 35 H 0.042 0.958 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.232 0.768 39 H 0.201 0.799 40 H 0.414 0.586 41 H 0.077 0.923 42 H 0.061 0.939 43 H 0.069 0.931 44 H 0.061 0.939 45 H 0.015 0.985 46 H 0.016 0.984 47 H 0.376 0.624 48 H 0.251 0.749 49 H 0.056 0.944 50 H 0.050 0.950 51 H 0.076 0.924 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.055 20.994 19.591 30.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.084 4.084 3 C -0.184 4.184 4 C 0.081 3.919 5 N -0.241 5.241 6 C 0.027 3.973 7 N -0.250 5.250 8 C 0.023 3.977 9 C -0.259 4.259 10 C 0.357 3.643 11 O -0.431 6.431 12 N -0.353 5.353 13 C 0.050 3.950 14 H 0.093 0.907 15 C -0.155 4.155 16 C -0.140 4.140 17 C -0.102 4.102 18 H 0.086 0.914 19 C 0.027 3.973 20 N -0.385 5.385 21 C -0.379 4.379 22 H 0.090 0.910 23 C -0.268 4.268 24 N -0.618 5.618 25 Si 0.801 3.199 26 H -0.205 1.205 27 H -0.220 1.220 28 H -0.205 1.205 29 C -0.140 4.140 30 C -0.151 4.151 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.066 0.934 34 H 0.113 0.887 35 H 0.062 0.938 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.248 0.752 39 H 0.217 0.783 40 H 0.251 0.749 41 H 0.095 0.905 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.080 0.920 45 H 0.033 0.967 46 H 0.034 0.966 47 H 0.208 0.792 48 H 0.060 0.940 49 H 0.075 0.925 50 H 0.069 0.931 51 H 0.094 0.906 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.210 21.855 19.720 31.157 hybrid contribution 0.566 -1.537 -1.255 2.064 sum -9.644 20.318 18.465 29.100 Atomic orbital electron populations 1.21745 0.92230 1.01897 1.03331 1.20500 0.97547 0.97330 0.92977 1.21623 1.00380 0.93458 1.02985 1.22020 0.87413 0.88076 0.94346 1.68372 1.28084 1.28941 0.98746 1.25904 0.87256 0.85805 0.98336 1.68564 1.11983 1.15797 1.28629 1.23928 0.93635 0.94358 0.85740 1.21606 1.04560 1.03334 0.96404 1.17898 0.77289 0.82963 0.86127 1.90778 1.53613 1.50976 1.47772 1.45909 1.64418 1.07669 1.17282 1.20946 0.93783 0.95947 0.84372 0.90674 1.21804 0.94516 1.01506 0.97697 1.21404 1.01119 0.94317 0.97134 1.21225 0.95834 0.96956 0.96152 0.91438 1.20867 0.96726 0.84213 0.95517 1.42565 1.70732 1.05280 1.19969 1.19600 1.29864 0.92234 0.96159 0.91038 1.25538 1.02461 0.97217 1.01558 1.69796 1.49312 1.06785 1.35950 0.85232 0.78100 0.76994 0.79560 1.20512 1.22029 1.20527 1.21374 0.94758 1.00935 0.96955 1.21712 1.01595 0.94138 0.97692 0.91331 0.90724 0.93354 0.88746 0.93842 0.90577 0.91843 0.75235 0.78265 0.74879 0.90479 0.91998 0.91185 0.91979 0.96709 0.96649 0.79168 0.93998 0.92488 0.93128 0.90560 0.90011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 9.02 71.98 0.65 -1.33 16 2 C -0.06 -1.16 2.72 -11.54 -0.03 -1.19 16 3 C -0.13 -2.11 9.18 71.98 0.66 -1.45 16 4 C 0.23 4.18 5.55 42.91 0.24 4.42 16 5 N -0.53 -8.82 9.89 -187.07 -1.85 -10.67 16 6 C 0.31 4.15 12.27 180.84 2.22 6.37 16 7 N -0.54 -7.81 10.42 -198.97 -2.07 -9.88 16 8 C 0.19 2.50 10.64 85.07 0.91 3.41 16 9 C -0.25 -4.26 5.81 -19.91 -0.12 -4.38 16 10 C 0.57 11.05 6.99 86.78 0.61 11.65 16 11 O -0.55 -14.39 14.19 -3.87 -0.05 -14.44 16 12 N -0.70 -10.67 5.02 -445.42 -2.23 -12.91 16 13 C 0.15 2.95 2.45 44.99 0.11 3.06 16 14 H 0.08 1.75 7.58 -2.39 -0.02 1.73 16 15 C -0.12 -2.33 5.50 30.60 0.17 -2.16 16 16 C -0.10 -2.43 5.20 30.60 0.16 -2.27 16 17 C -0.08 -2.48 2.23 -10.80 -0.02 -2.50 16 18 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 19 C 0.15 6.09 5.65 86.38 0.49 6.58 16 20 N -0.74 -37.62 5.33 -343.45 -1.83 -39.45 16 21 C -0.25 -13.90 9.99 84.03 0.84 -13.06 16 22 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 23 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 24 N -0.97 -58.88 13.06 21.65 0.28 -58.59 16 25 Si 0.97 46.27 29.55 68.60 2.03 48.30 16 26 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 27 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 28 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 29 C -0.10 -2.89 5.08 30.59 0.16 -2.74 16 30 C -0.11 -2.27 5.39 30.59 0.16 -2.11 16 31 H 0.07 0.99 7.92 -2.38 -0.02 0.97 16 32 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.09 2.04 5.32 -2.38 -0.01 2.02 16 35 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 36 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.23 1.32 8.06 -2.91 -0.02 1.30 16 39 H 0.20 1.34 7.78 -2.91 -0.02 1.31 16 40 H 0.41 3.94 7.94 -92.71 -0.74 3.20 16 41 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.01 0.61 8.14 -2.38 -0.02 0.59 16 46 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 47 H 0.38 19.93 6.85 -92.71 -0.63 19.29 16 48 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 49 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 50 H 0.05 1.75 7.18 -2.39 -0.02 1.73 16 51 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 52 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -70.81 414.81 1.48 -69.34 By element: Atomic # 1 Polarization: 30.33 SS G_CDS: -0.45 Total: 29.89 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: 7.66 Total: -1.57 kcal Atomic # 7 Polarization: -123.79 SS G_CDS: -7.71 Total: -131.50 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.05 Total: -14.44 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -70.81 1.48 -69.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754957792.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.166 kcal (2) G-P(sol) polarization free energy of solvation -70.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds