Wall clock time and date at job start Wed Apr 1 2020 04:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47030 * 2 1 4 4 C 1.52995 * 109.47618 * 120.00226 * 2 1 3 5 5 C 1.53001 * 109.47200 * 64.99578 * 4 2 1 6 6 N 1.46500 * 109.47442 * 180.02562 * 5 4 2 7 7 C 1.46492 * 120.00049 * 270.00464 * 6 5 4 8 8 C 1.50703 * 109.47231 * 262.74228 * 7 6 5 9 9 H 1.08005 * 119.99541 * 359.97438 * 8 7 6 10 10 C 1.37874 * 120.00255 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00321 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 120.00103 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.46847 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.46869 * 119.99967 * 12 10 8 15 15 H 1.48500 * 109.47083 * 240.00348 * 12 10 8 16 16 C 1.34771 * 119.99849 * 89.99978 * 6 5 4 17 17 O 1.21558 * 120.00147 * 3.00263 * 16 6 5 18 18 C 1.47855 * 120.00154 * 183.00251 * 16 6 5 19 19 C 1.40071 * 120.09867 * 173.18935 * 18 16 6 20 20 C 1.38285 * 117.99092 * 179.75121 * 19 18 16 21 21 C 1.39597 * 118.03237 * 0.24555 * 20 19 18 22 22 N 1.38508 * 120.05074 * 180.02562 * 21 20 19 23 23 C 1.48528 * 111.00049 * 62.59893 * 22 21 20 24 24 C 1.54940 * 103.22660 * 159.72687 * 23 22 21 25 25 C 1.54601 * 102.91879 * 322.58439 * 24 23 22 26 26 C 1.47894 * 111.00209 * 180.02562 * 22 21 20 27 27 N 1.32851 * 119.90584 * 0.02562 * 21 20 19 28 28 N 1.28360 * 122.15918 * 0.02562 * 27 21 20 29 29 H 1.09005 * 109.46948 * 299.99861 * 1 2 3 30 30 H 1.09002 * 109.47147 * 59.99542 * 1 2 3 31 31 H 1.08999 * 109.47071 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47243 * 240.00566 * 2 1 3 33 33 H 1.09003 * 109.46992 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47023 * 300.00263 * 3 2 1 35 35 H 1.09000 * 109.47180 * 60.00737 * 3 2 1 36 36 H 1.09005 * 109.46929 * 305.00054 * 4 2 1 37 37 H 1.08995 * 109.47537 * 185.00136 * 4 2 1 38 38 H 1.09005 * 109.46791 * 60.00392 * 5 4 2 39 39 H 1.09004 * 109.47074 * 300.00668 * 5 4 2 40 40 H 1.09005 * 109.47277 * 22.73986 * 7 6 5 41 41 H 1.08994 * 109.47457 * 142.73990 * 7 6 5 42 42 H 0.96996 * 120.00366 * 179.97438 * 11 10 8 43 43 H 1.07992 * 121.00120 * 0.02562 * 19 18 16 44 44 H 1.08009 * 120.98333 * 180.22508 * 20 19 18 45 45 H 1.09007 * 110.67268 * 278.15821 * 23 22 21 46 46 H 1.08998 * 110.67118 * 41.29245 * 23 22 21 47 47 H 1.09004 * 110.72169 * 204.23041 * 24 23 22 48 48 H 1.08997 * 110.72825 * 80.94791 * 24 23 22 49 49 H 1.08995 * 110.30852 * 263.03993 * 25 24 23 50 50 H 1.09002 * 110.30346 * 140.87283 * 25 24 23 51 51 H 1.09000 * 109.91663 * 333.50799 * 26 22 21 52 52 H 1.09003 * 109.91742 * 94.80268 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6353 -2.1955 1.1879 6 7 2.1232 -2.8860 2.3843 7 6 3.4514 -3.5040 2.3829 8 6 3.3205 -4.9755 2.0848 9 1 2.3453 -5.4071 1.9140 10 6 4.4456 -5.7705 2.0302 11 7 5.6331 -5.2448 2.2377 12 14 4.2833 -7.5946 1.6615 13 1 2.8508 -7.9348 1.4677 14 1 5.0402 -7.9191 0.4258 15 1 4.8297 -8.3798 2.7974 16 6 1.3501 -2.9527 3.4862 17 8 0.2271 -2.4877 3.4698 18 6 1.8679 -3.5913 4.7151 19 6 1.1254 -3.5367 5.9015 20 6 1.6484 -4.1532 7.0234 21 6 2.8864 -4.7875 6.9064 22 7 3.4488 -5.4185 8.0036 23 6 2.5949 -6.5418 8.4673 24 6 3.5745 -7.4156 9.2904 25 6 4.8901 -7.3123 8.4849 26 6 4.7546 -6.0204 7.6572 27 7 3.5244 -4.7850 5.7411 28 7 3.0411 -4.2126 4.6988 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.6054 -0.2618 2.1369 37 1 3.1263 -0.6443 1.2950 38 1 2.0699 -2.6550 0.3001 39 1 0.5489 -2.2724 1.1420 40 1 4.0707 -3.0325 1.6198 41 1 3.9150 -3.3711 3.3603 42 1 6.4246 -5.8042 2.1997 43 1 0.1712 -3.0323 5.9378 44 1 1.1149 -4.1438 7.9626 45 1 1.7847 -6.1746 9.0974 46 1 2.2005 -7.1010 7.6189 47 1 3.2281 -8.4483 9.3325 48 1 3.7036 -7.0098 10.2938 49 1 4.9992 -8.1741 7.8266 50 1 5.7425 -7.2408 9.1605 51 1 4.7843 -6.2562 6.5934 52 1 5.5601 -5.3308 7.9100 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264581045.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:37 Heat of formation + Delta-G solvation = 42.697851 kcal Electronic energy + Delta-G solvation = -31564.115200 eV Core-core repulsion = 27564.838600 eV Total energy + Delta-G solvation = -3999.276600 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.95126 -39.29428 -38.22229 -36.53152 -34.82602 -33.24507 -32.65441 -32.37284 -30.07687 -29.03536 -28.67302 -27.01381 -26.86312 -24.71242 -24.19652 -23.01764 -22.69427 -21.33824 -20.77333 -19.80406 -19.28224 -17.39093 -17.31344 -16.63901 -16.19412 -15.93883 -15.33695 -15.00915 -14.84980 -14.54861 -14.35156 -14.07828 -13.83174 -13.60714 -13.55222 -13.29936 -12.95805 -12.91923 -12.59763 -12.28518 -12.25694 -12.13827 -12.05176 -11.82139 -11.61083 -11.44257 -11.25556 -10.99649 -10.94776 -10.87951 -10.72799 -10.63688 -10.47150 -10.38300 -10.21428 -10.07543 -9.83852 -9.81772 -9.54846 -9.20540 -8.87413 -8.37663 -8.10163 -7.65323 -5.96983 -3.95984 0.99622 1.27116 3.22579 3.30472 3.38066 3.41760 3.61835 3.80375 4.23424 4.39713 4.47810 4.56071 4.74306 4.86640 4.94333 4.99758 5.09298 5.14122 5.16896 5.19299 5.27164 5.36473 5.40209 5.40997 5.56840 5.63853 5.70025 5.73186 5.74207 5.83701 5.85884 5.90116 5.90714 5.97623 6.01990 6.05803 6.10743 6.12703 6.25076 6.27931 6.34125 6.39967 6.40251 6.62748 6.68548 6.71680 6.86570 7.07714 7.54452 7.72722 7.94266 8.29011 8.31420 8.82173 9.04963 9.27243 9.63752 11.11257 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010579 B = 0.003628 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2646.094568 B = 7715.212932 C = 9509.720199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.145 4.145 4 C -0.128 4.128 5 C 0.116 3.884 6 N -0.572 5.572 7 C 0.227 3.773 8 C -0.504 4.504 9 H 0.051 0.949 10 C 0.076 3.924 11 N -0.879 5.879 12 Si 0.883 3.117 13 H -0.277 1.277 14 H -0.284 1.284 15 H -0.284 1.284 16 C 0.572 3.428 17 O -0.571 6.571 18 C -0.010 4.010 19 C -0.052 4.052 20 C -0.152 4.152 21 C 0.245 3.755 22 N -0.457 5.457 23 C 0.042 3.958 24 C -0.122 4.122 25 C -0.132 4.132 26 C 0.030 3.970 27 N -0.278 5.278 28 N -0.104 5.104 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.050 0.950 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.030 0.970 41 H 0.078 0.922 42 H 0.260 0.740 43 H 0.154 0.846 44 H 0.146 0.854 45 H 0.089 0.911 46 H 0.056 0.944 47 H 0.076 0.924 48 H 0.077 0.923 49 H 0.071 0.929 50 H 0.074 0.926 51 H 0.090 0.910 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.343 2.846 8.774 10.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.167 4.167 5 C -0.007 4.007 6 N -0.299 5.299 7 C 0.108 3.892 8 C -0.544 4.544 9 H 0.069 0.931 10 C -0.127 4.127 11 N -0.518 5.518 12 Si 0.712 3.288 13 H -0.202 1.202 14 H -0.211 1.211 15 H -0.210 1.210 16 C 0.358 3.642 17 O -0.452 6.452 18 C -0.156 4.156 19 C -0.082 4.082 20 C -0.183 4.183 21 C 0.008 3.992 22 N -0.177 5.177 23 C -0.084 4.084 24 C -0.160 4.160 25 C -0.171 4.171 26 C -0.096 4.096 27 N -0.125 5.125 28 N 0.050 4.950 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.047 0.953 41 H 0.095 0.905 42 H 0.070 0.930 43 H 0.171 0.829 44 H 0.164 0.836 45 H 0.107 0.893 46 H 0.075 0.925 47 H 0.094 0.906 48 H 0.095 0.905 49 H 0.089 0.911 50 H 0.092 0.908 51 H 0.109 0.891 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.302 2.961 8.322 9.825 hybrid contribution -1.173 -1.217 0.108 1.694 sum -5.475 1.744 8.429 10.202 Atomic orbital electron populations 1.21880 0.95357 1.02080 1.01136 1.21049 0.95826 0.95924 0.98480 1.21823 1.00955 0.96173 1.01261 1.22001 1.01263 0.95710 0.97680 1.21476 1.00082 0.91157 0.88025 1.48269 1.19579 1.51261 1.10831 1.20107 0.76554 0.92498 1.00089 1.21234 0.92861 0.93145 1.47155 0.93087 1.24718 0.95171 0.97686 0.95145 1.69912 0.97645 1.35405 1.48805 0.86682 0.77947 0.86371 0.77816 1.20153 1.21070 1.21045 1.17472 0.84610 0.79295 0.82795 1.90679 1.19273 1.50991 1.84271 1.22856 0.95090 1.02087 0.95588 1.22181 1.00000 0.94753 0.91230 1.21702 0.96060 1.00469 1.00073 1.21808 0.91736 0.94976 0.90721 1.61710 1.04670 1.25280 1.25998 1.23333 0.96113 0.90046 0.98913 1.22499 0.94799 0.99532 0.99186 1.22457 0.98050 0.97802 0.98750 1.22982 0.89834 0.95101 1.01727 1.73714 1.29090 1.14912 0.94823 1.74425 1.06655 0.98871 1.15097 0.92778 0.93291 0.92232 0.91110 0.92733 0.93051 0.92927 0.91993 0.91642 0.90296 0.90570 0.95253 0.90470 0.93020 0.82872 0.83623 0.89256 0.92521 0.90571 0.90452 0.91057 0.90761 0.89143 0.89706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 8.95 37.16 0.33 -1.49 16 2 C -0.09 -1.22 2.92 -90.62 -0.26 -1.48 16 3 C -0.14 -1.65 9.19 37.16 0.34 -1.31 16 4 C -0.13 -2.03 5.01 -26.73 -0.13 -2.17 16 5 C 0.12 2.14 5.15 -4.04 -0.02 2.12 16 6 N -0.57 -12.49 2.48 -176.17 -0.44 -12.93 16 7 C 0.23 5.62 4.77 -5.20 -0.02 5.59 16 8 C -0.50 -13.56 7.96 -34.44 -0.27 -13.83 16 9 H 0.05 1.43 7.81 -52.48 -0.41 1.02 16 10 C 0.08 2.07 5.46 -17.82 -0.10 1.97 16 11 N -0.88 -24.78 13.29 55.43 0.74 -24.04 16 12 Si 0.88 21.48 29.54 -169.99 -5.02 16.46 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 16 C 0.57 12.55 7.58 -12.33 -0.09 12.45 16 17 O -0.57 -12.71 15.96 5.31 0.08 -12.63 16 18 C -0.01 -0.20 6.70 -82.84 -0.55 -0.76 16 19 C -0.05 -0.88 9.71 -38.88 -0.38 -1.25 16 20 C -0.15 -2.28 9.57 -39.06 -0.37 -2.65 16 21 C 0.24 4.20 6.27 -154.94 -0.97 3.23 16 22 N -0.46 -6.59 5.29 -169.11 -0.89 -7.48 16 23 C 0.04 0.47 6.06 -1.90 -0.01 0.46 16 24 C -0.12 -1.15 7.06 -24.87 -0.18 -1.32 16 25 C -0.13 -1.46 6.93 -25.35 -0.18 -1.63 16 26 C 0.03 0.44 6.36 -2.74 -0.02 0.42 16 27 N -0.28 -5.88 9.32 31.21 0.29 -5.59 16 28 N -0.10 -2.39 6.19 33.32 0.21 -2.18 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.78 6.56 -51.93 -0.34 0.44 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.08 1.44 8.07 -51.93 -0.42 1.02 16 39 H 0.08 1.40 5.80 -51.93 -0.30 1.10 16 40 H 0.03 0.76 8.02 -51.93 -0.42 0.34 16 41 H 0.08 2.05 5.26 -52.28 -0.27 1.77 16 42 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 43 H 0.15 2.25 7.73 -52.49 -0.41 1.84 16 44 H 0.15 1.63 8.06 -52.48 -0.42 1.21 16 45 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 46 H 0.06 0.71 7.99 -51.93 -0.42 0.30 16 47 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 49 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 51 H 0.09 1.62 6.50 -51.93 -0.34 1.28 16 52 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 LS Contribution 413.14 15.07 6.23 6.23 Total: -1.00 -30.78 413.14 -10.50 -41.28 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -8.80 Total: 2.54 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -2.89 Total: -1.64 kcal Atomic # 7 Polarization: -52.13 SS G_CDS: -0.10 Total: -52.23 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.08 Total: -12.63 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -30.78 -10.50 -41.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264581045.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.975 kcal (2) G-P(sol) polarization free energy of solvation -30.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds