Wall clock time and date at job start Wed Apr 1 2020 04:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47030 * 2 1 4 4 C 1.52995 * 109.47618 * 120.00226 * 2 1 3 5 5 C 1.53001 * 109.47200 * 64.99578 * 4 2 1 6 6 N 1.46500 * 109.47442 * 180.02562 * 5 4 2 7 7 C 1.46492 * 120.00049 * 270.00464 * 6 5 4 8 8 C 1.50703 * 109.47231 * 262.74228 * 7 6 5 9 9 H 1.08005 * 119.99541 * 359.97438 * 8 7 6 10 10 C 1.37874 * 120.00255 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00321 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 120.00103 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.46847 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.46869 * 119.99967 * 12 10 8 15 15 H 1.48500 * 109.47083 * 240.00348 * 12 10 8 16 16 C 1.34771 * 119.99849 * 89.99978 * 6 5 4 17 17 O 1.21558 * 120.00147 * 3.00263 * 16 6 5 18 18 C 1.47855 * 120.00154 * 183.00251 * 16 6 5 19 19 C 1.40071 * 120.09867 * 173.18935 * 18 16 6 20 20 C 1.38285 * 117.99092 * 179.75121 * 19 18 16 21 21 C 1.39597 * 118.03237 * 0.24555 * 20 19 18 22 22 N 1.38508 * 120.05074 * 180.02562 * 21 20 19 23 23 C 1.48528 * 111.00049 * 62.59893 * 22 21 20 24 24 C 1.54940 * 103.22660 * 159.72687 * 23 22 21 25 25 C 1.54601 * 102.91879 * 322.58439 * 24 23 22 26 26 C 1.47894 * 111.00209 * 180.02562 * 22 21 20 27 27 N 1.32851 * 119.90584 * 0.02562 * 21 20 19 28 28 N 1.28360 * 122.15918 * 0.02562 * 27 21 20 29 29 H 1.09005 * 109.46948 * 299.99861 * 1 2 3 30 30 H 1.09002 * 109.47147 * 59.99542 * 1 2 3 31 31 H 1.08999 * 109.47071 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47243 * 240.00566 * 2 1 3 33 33 H 1.09003 * 109.46992 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47023 * 300.00263 * 3 2 1 35 35 H 1.09000 * 109.47180 * 60.00737 * 3 2 1 36 36 H 1.09005 * 109.46929 * 305.00054 * 4 2 1 37 37 H 1.08995 * 109.47537 * 185.00136 * 4 2 1 38 38 H 1.09005 * 109.46791 * 60.00392 * 5 4 2 39 39 H 1.09004 * 109.47074 * 300.00668 * 5 4 2 40 40 H 1.09005 * 109.47277 * 22.73986 * 7 6 5 41 41 H 1.08994 * 109.47457 * 142.73990 * 7 6 5 42 42 H 0.96996 * 120.00366 * 179.97438 * 11 10 8 43 43 H 1.07992 * 121.00120 * 0.02562 * 19 18 16 44 44 H 1.08009 * 120.98333 * 180.22508 * 20 19 18 45 45 H 1.09007 * 110.67268 * 278.15821 * 23 22 21 46 46 H 1.08998 * 110.67118 * 41.29245 * 23 22 21 47 47 H 1.09004 * 110.72169 * 204.23041 * 24 23 22 48 48 H 1.08997 * 110.72825 * 80.94791 * 24 23 22 49 49 H 1.08995 * 110.30852 * 263.03993 * 25 24 23 50 50 H 1.09002 * 110.30346 * 140.87283 * 25 24 23 51 51 H 1.09000 * 109.91663 * 333.50799 * 26 22 21 52 52 H 1.09003 * 109.91742 * 94.80268 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6353 -2.1955 1.1879 6 7 2.1232 -2.8860 2.3843 7 6 3.4514 -3.5040 2.3829 8 6 3.3205 -4.9755 2.0848 9 1 2.3453 -5.4071 1.9140 10 6 4.4456 -5.7705 2.0302 11 7 5.6331 -5.2448 2.2377 12 14 4.2833 -7.5946 1.6615 13 1 2.8508 -7.9348 1.4677 14 1 5.0402 -7.9191 0.4258 15 1 4.8297 -8.3798 2.7974 16 6 1.3501 -2.9527 3.4862 17 8 0.2271 -2.4877 3.4698 18 6 1.8679 -3.5913 4.7151 19 6 1.1254 -3.5367 5.9015 20 6 1.6484 -4.1532 7.0234 21 6 2.8864 -4.7875 6.9064 22 7 3.4488 -5.4185 8.0036 23 6 2.5949 -6.5418 8.4673 24 6 3.5745 -7.4156 9.2904 25 6 4.8901 -7.3123 8.4849 26 6 4.7546 -6.0204 7.6572 27 7 3.5244 -4.7850 5.7411 28 7 3.0411 -4.2126 4.6988 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.6054 -0.2618 2.1369 37 1 3.1263 -0.6443 1.2950 38 1 2.0699 -2.6550 0.3001 39 1 0.5489 -2.2724 1.1420 40 1 4.0707 -3.0325 1.6198 41 1 3.9150 -3.3711 3.3603 42 1 6.4246 -5.8042 2.1997 43 1 0.1712 -3.0323 5.9378 44 1 1.1149 -4.1438 7.9626 45 1 1.7847 -6.1746 9.0974 46 1 2.2005 -7.1010 7.6189 47 1 3.2281 -8.4483 9.3325 48 1 3.7036 -7.0098 10.2938 49 1 4.9992 -8.1741 7.8266 50 1 5.7425 -7.2408 9.1605 51 1 4.7843 -6.2562 6.5934 52 1 5.5601 -5.3308 7.9100 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264581045.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:35 Heat of formation + Delta-G solvation = 25.769085 kcal Electronic energy + Delta-G solvation = -31564.849286 eV Core-core repulsion = 27564.838600 eV Total energy + Delta-G solvation = -4000.010687 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.36911 -40.79130 -39.51035 -37.86325 -36.46454 -34.47153 -34.39082 -34.03925 -31.38579 -30.12065 -30.02962 -28.74616 -27.99117 -26.16627 -25.52066 -24.88293 -24.13544 -22.43582 -21.79171 -21.01163 -20.78718 -18.92806 -18.59193 -18.43623 -17.94828 -17.11571 -16.81144 -16.48123 -16.37425 -16.10840 -15.76806 -15.38600 -15.08963 -14.97839 -14.70686 -14.52925 -14.29260 -14.25779 -14.11714 -13.71608 -13.69317 -13.45409 -13.20797 -13.12754 -12.84851 -12.81403 -12.73614 -12.37710 -12.26870 -12.21694 -12.14555 -11.94914 -11.78184 -11.57191 -11.52348 -11.48794 -11.41623 -11.35430 -11.21397 -10.89082 -10.48805 -10.26155 -9.50855 -9.43367 -8.07081 -6.12684 -0.44017 -0.08179 1.34107 1.36159 1.44981 1.66645 2.12821 2.41246 2.45163 2.74657 3.11743 3.27779 3.43295 3.56470 3.70073 3.77883 3.92299 3.94004 3.95850 4.01841 4.07823 4.10856 4.28151 4.30929 4.48382 4.50087 4.55297 4.67323 4.70776 4.74846 4.77959 4.83374 4.86978 4.91997 4.93603 4.96393 4.98403 5.04073 5.09930 5.12980 5.14016 5.17726 5.25288 5.31323 5.48099 5.49053 5.52364 5.59750 5.78549 5.86350 5.88271 6.22768 6.47324 6.89969 7.14788 7.51129 7.79161 9.00807 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010579 B = 0.003628 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2646.094568 B = 7715.212932 C = 9509.720199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 C -0.141 4.141 4 C -0.117 4.117 5 C 0.113 3.887 6 N -0.579 5.579 7 C 0.247 3.753 8 C -0.507 4.507 9 H 0.033 0.967 10 C 0.037 3.963 11 N -0.907 5.907 12 Si 0.936 3.064 13 H -0.279 1.279 14 H -0.274 1.274 15 H -0.284 1.284 16 C 0.568 3.432 17 O -0.579 6.579 18 C -0.035 4.035 19 C -0.049 4.049 20 C -0.127 4.127 21 C 0.243 3.757 22 N -0.451 5.451 23 C 0.036 3.964 24 C -0.111 4.111 25 C -0.128 4.128 26 C 0.027 3.973 27 N -0.317 5.317 28 N -0.145 5.145 29 H 0.049 0.951 30 H 0.070 0.930 31 H 0.047 0.953 32 H 0.075 0.925 33 H 0.052 0.948 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.054 0.946 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.011 0.989 41 H 0.064 0.936 42 H 0.261 0.739 43 H 0.178 0.822 44 H 0.196 0.804 45 H 0.121 0.879 46 H 0.041 0.959 47 H 0.096 0.904 48 H 0.097 0.903 49 H 0.066 0.934 50 H 0.093 0.907 51 H 0.050 0.950 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.900 2.547 10.885 13.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 C -0.199 4.199 4 C -0.155 4.155 5 C -0.009 4.009 6 N -0.306 5.306 7 C 0.126 3.874 8 C -0.546 4.546 9 H 0.052 0.948 10 C -0.163 4.163 11 N -0.547 5.547 12 Si 0.763 3.237 13 H -0.204 1.204 14 H -0.200 1.200 15 H -0.210 1.210 16 C 0.355 3.645 17 O -0.460 6.460 18 C -0.183 4.183 19 C -0.078 4.078 20 C -0.157 4.157 21 C 0.005 3.995 22 N -0.170 5.170 23 C -0.089 4.089 24 C -0.149 4.149 25 C -0.167 4.167 26 C -0.100 4.100 27 N -0.165 5.165 28 N 0.010 4.990 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.029 0.971 41 H 0.081 0.919 42 H 0.070 0.930 43 H 0.196 0.804 44 H 0.213 0.787 45 H 0.139 0.861 46 H 0.060 0.940 47 H 0.114 0.886 48 H 0.115 0.885 49 H 0.084 0.916 50 H 0.111 0.889 51 H 0.068 0.932 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.860 2.655 10.421 12.246 hybrid contribution -0.725 -1.121 -0.384 1.389 sum -6.584 1.534 10.037 12.101 Atomic orbital electron populations 1.21850 0.94614 1.01628 1.02042 1.21051 0.96410 0.96729 0.96793 1.21793 1.00867 0.94931 1.02271 1.21898 1.00493 0.94127 0.99024 1.21643 0.99983 0.92490 0.86800 1.48274 1.18743 1.51578 1.12051 1.19651 0.77681 0.91518 0.98551 1.21237 0.91976 0.94200 1.47192 0.94825 1.25287 0.94938 1.00992 0.95120 1.70000 0.98103 1.36568 1.50015 0.85865 0.77653 0.82344 0.77871 1.20398 1.19963 1.20977 1.17728 0.84497 0.79125 0.83183 1.90647 1.19307 1.51515 1.84580 1.22948 0.95734 1.03046 0.96621 1.22443 1.00422 0.94677 0.90236 1.22171 0.94717 0.97644 1.01193 1.22221 0.92303 0.94708 0.90228 1.61836 1.05030 1.26187 1.23985 1.23582 0.97023 0.89250 0.99032 1.22535 0.92709 1.00449 0.99226 1.22454 1.00147 0.95363 0.98707 1.22946 0.90099 0.96948 1.00053 1.73610 1.30593 1.16192 0.96081 1.74258 1.07887 1.00172 1.16698 0.93174 0.91056 0.93357 0.90672 0.92912 0.91052 0.92892 0.92987 0.92739 0.90623 0.90422 0.97088 0.91923 0.92997 0.80434 0.78655 0.86093 0.94038 0.88558 0.88493 0.91567 0.88867 0.93193 0.90252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 8.95 71.98 0.64 -2.77 16 2 C -0.09 -2.31 2.92 -10.79 -0.03 -2.34 16 3 C -0.14 -3.04 9.19 71.98 0.66 -2.38 16 4 C -0.12 -3.82 5.01 30.59 0.15 -3.67 16 5 C 0.11 4.34 5.15 86.38 0.45 4.79 16 6 N -0.58 -26.49 2.48 -829.56 -2.06 -28.54 16 7 C 0.25 12.91 4.77 85.64 0.41 13.32 16 8 C -0.51 -28.48 7.96 25.60 0.20 -28.27 16 9 H 0.03 1.96 7.81 -2.91 -0.02 1.94 16 10 C 0.04 2.09 5.46 84.65 0.46 2.55 16 11 N -0.91 -53.14 13.29 21.45 0.28 -52.85 16 12 Si 0.94 45.25 29.54 68.60 2.03 47.27 16 13 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 14 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 15 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 16 C 0.57 25.64 7.58 86.79 0.66 26.30 16 17 O -0.58 -25.99 15.96 -3.90 -0.06 -26.05 16 18 C -0.04 -1.51 6.70 42.00 0.28 -1.23 16 19 C -0.05 -1.58 9.71 22.73 0.22 -1.36 16 20 C -0.13 -3.46 9.57 22.61 0.22 -3.25 16 21 C 0.24 8.17 6.27 133.21 0.84 9.01 16 22 N -0.45 -12.26 5.29 -688.93 -3.64 -15.90 16 23 C 0.04 0.70 6.06 86.65 0.53 1.23 16 24 C -0.11 -1.68 7.06 31.80 0.22 -1.46 16 25 C -0.13 -2.60 6.93 31.49 0.22 -2.38 16 26 C 0.03 0.78 6.36 86.46 0.55 1.33 16 27 N -0.32 -13.92 9.32 -55.17 -0.51 -14.43 16 28 N -0.15 -6.93 6.19 -48.50 -0.30 -7.23 16 29 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 30 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.05 1.24 6.56 -2.39 -0.02 1.23 16 32 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 37 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.08 2.90 8.07 -2.38 -0.02 2.88 16 39 H 0.08 2.94 5.80 -2.39 -0.01 2.93 16 40 H 0.01 0.61 8.02 -2.38 -0.02 0.59 16 41 H 0.06 3.55 5.26 -2.84 -0.01 3.54 16 42 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 43 H 0.18 4.79 7.73 -2.91 -0.02 4.76 16 44 H 0.20 3.33 8.06 -2.91 -0.02 3.31 16 45 H 0.12 1.63 8.14 -2.38 -0.02 1.61 16 46 H 0.04 0.96 7.99 -2.39 -0.02 0.94 16 47 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 48 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 49 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 50 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 51 H 0.05 1.89 6.50 -2.39 -0.02 1.87 16 52 H 0.08 2.32 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -70.93 413.14 3.30 -67.63 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: 0.89 Total: 20.70 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: 6.68 Total: 9.41 kcal Atomic # 7 Polarization: -112.73 SS G_CDS: -6.23 Total: -118.96 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -0.06 Total: -26.05 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -70.93 3.30 -67.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264581045.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.396 kcal (2) G-P(sol) polarization free energy of solvation -70.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds