Wall clock time and date at job start Wed Apr 1 2020 04:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.46893 * 2 1 4 4 C 1.52996 * 109.46828 * 239.99824 * 2 1 3 5 5 C 1.53001 * 109.47004 * 119.99794 * 2 1 3 6 6 N 1.46501 * 109.46846 * 64.92226 * 5 2 1 7 7 C 1.46502 * 119.99899 * 273.34371 * 6 5 2 8 8 C 1.50703 * 109.47130 * 262.64534 * 7 6 5 9 9 H 1.08003 * 119.99845 * 0.02562 * 8 7 6 10 10 C 1.37874 * 119.99739 * 179.97438 * 8 7 6 11 11 N 1.31516 * 120.00504 * 0.02562 * 10 8 7 12 12 Si 1.86806 * 119.99743 * 180.02562 * 10 8 7 13 13 H 1.48493 * 109.47277 * 59.99639 * 12 10 8 14 14 H 1.48500 * 109.46993 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.46766 * 299.99717 * 12 10 8 16 16 C 1.34782 * 120.00114 * 93.34822 * 6 5 2 17 17 O 1.21474 * 119.99922 * 4.00025 * 16 6 5 18 18 C 1.48462 * 119.99897 * 184.00886 * 16 6 5 19 19 C 1.39512 * 120.50193 * 173.34522 * 18 16 6 20 20 C 1.38773 * 118.42364 * 179.74729 * 19 18 16 21 21 N 1.32143 * 119.24455 * 0.24490 * 20 19 18 22 22 C 1.32566 * 120.96041 * 0.02562 * 21 20 19 23 23 N 1.38431 * 119.13723 * 180.02562 * 22 21 20 24 24 C 1.48538 * 110.99842 * 242.60320 * 23 22 21 25 25 C 1.54930 * 103.22657 * 159.72337 * 24 23 22 26 26 C 1.54600 * 102.92063 * 322.58494 * 25 24 23 27 27 C 1.47895 * 111.00000 * 359.97438 * 23 22 21 28 28 N 1.32289 * 121.72253 * 359.97438 * 22 21 20 29 29 H 1.09003 * 109.47409 * 299.99973 * 1 2 3 30 30 H 1.09002 * 109.47457 * 59.99769 * 1 2 3 31 31 H 1.08997 * 109.47175 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.47163 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47286 * 299.99796 * 3 2 1 34 34 H 1.09000 * 109.47711 * 60.00166 * 3 2 1 35 35 H 1.09002 * 109.47583 * 305.07881 * 4 2 1 36 36 H 1.09001 * 109.47092 * 65.08018 * 4 2 1 37 37 H 1.08999 * 109.47319 * 185.07929 * 4 2 1 38 38 H 1.08999 * 109.47515 * 304.92537 * 5 2 1 39 39 H 1.08994 * 109.46860 * 184.91733 * 5 2 1 40 40 H 1.08995 * 109.47149 * 22.64729 * 7 6 5 41 41 H 1.09005 * 109.46780 * 142.65071 * 7 6 5 42 42 H 0.96994 * 120.00098 * 179.97438 * 11 10 8 43 43 H 1.07998 * 120.78940 * 0.02562 * 19 18 16 44 44 H 1.08004 * 120.37829 * 180.22914 * 20 19 18 45 45 H 1.08998 * 110.66280 * 278.15611 * 24 23 22 46 46 H 1.09000 * 110.66825 * 41.28591 * 24 23 22 47 47 H 1.09004 * 110.72693 * 204.22892 * 25 24 23 48 48 H 1.08999 * 110.87954 * 81.01340 * 25 24 23 49 49 H 1.09001 * 110.30939 * 263.03865 * 26 25 24 50 50 H 1.09000 * 110.30645 * 140.87593 * 26 25 24 51 51 H 1.08999 * 109.92112 * 333.51394 * 27 23 22 52 52 H 1.09003 * 109.91582 * 94.80217 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2493 6 7 1.6508 -2.1324 1.1915 7 6 0.3415 -2.5524 1.6970 8 6 0.4898 -3.0752 3.1027 9 1 1.4621 -3.0924 3.5726 10 6 -0.6159 -3.5305 3.7891 11 7 -1.7999 -3.5090 3.2170 12 14 -0.4321 -4.1778 5.5317 13 1 0.1149 -3.1066 6.4026 14 1 -1.7592 -4.6036 6.0441 15 1 0.4943 -5.3384 5.5334 16 6 2.4973 -3.0443 0.6733 17 8 3.6103 -2.7086 0.3212 18 6 2.0692 -4.4589 0.5327 19 6 2.8811 -5.3822 -0.1267 20 6 2.4411 -6.6944 -0.2286 21 7 1.2735 -7.0262 0.2937 22 6 0.5213 -6.1252 0.9100 23 7 -0.6952 -6.5142 1.4439 24 6 -1.8185 -5.8000 0.7849 25 6 -3.0417 -6.6981 1.0974 26 6 -2.4562 -8.1256 0.9999 27 6 -0.9407 -7.9538 1.2097 28 7 0.9033 -4.8642 1.0290 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6042 -1.7193 -1.2959 36 1 1.7528 -0.1576 -2.1369 37 1 3.1261 -0.8008 -1.2050 38 1 1.6064 -0.2609 2.1371 39 1 3.1264 -0.6455 1.2944 40 1 -0.3387 -1.7007 1.6960 41 1 -0.0598 -3.3387 1.0574 42 1 -2.5776 -3.8297 3.6998 43 1 3.8314 -5.0838 -0.5441 44 1 3.0460 -7.4359 -0.7292 45 1 -1.9495 -4.8077 1.2167 46 1 -1.6544 -5.7340 -0.2906 47 1 -3.8271 -6.5519 0.3559 48 1 -3.4198 -6.5040 2.1011 49 1 -2.6560 -8.5501 0.0160 50 1 -2.8768 -8.7610 1.7794 51 1 -0.4030 -8.2824 0.3204 52 1 -0.6183 -8.5312 2.0762 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265765999.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:42 Heat of formation + Delta-G solvation = 51.234376 kcal Electronic energy + Delta-G solvation = -33354.087512 eV Core-core repulsion = 29355.181084 eV Total energy + Delta-G solvation = -3998.906429 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.94362 -39.38026 -38.04915 -36.69377 -34.53364 -33.01598 -32.59672 -32.15494 -29.33767 -28.57004 -27.64323 -26.97581 -26.84108 -26.22406 -24.22385 -23.42649 -22.66993 -21.12236 -20.61846 -19.38639 -18.32056 -17.32159 -17.05181 -16.46262 -15.77053 -15.54151 -15.26740 -15.10106 -14.90575 -14.48294 -14.32202 -14.09782 -13.63214 -13.52653 -13.37975 -13.20570 -12.67139 -12.55197 -12.27583 -12.13253 -12.04102 -11.89554 -11.83897 -11.49638 -11.23778 -11.12836 -11.06962 -10.92180 -10.81028 -10.72510 -10.64803 -10.44566 -10.36062 -10.27873 -10.12554 -10.06460 -9.92448 -9.64478 -9.52606 -9.39003 -8.42907 -8.13815 -7.81063 -7.52864 -5.93309 -3.89139 1.09595 1.49434 3.36581 3.39268 3.41874 3.48402 3.64822 3.85127 4.32007 4.47544 4.55087 4.90762 5.01242 5.08527 5.16648 5.16990 5.19558 5.31026 5.34796 5.45758 5.46444 5.60769 5.62410 5.78726 5.83655 5.85624 5.90405 5.97812 6.03226 6.09714 6.10361 6.13839 6.17307 6.20174 6.28252 6.29161 6.36386 6.47609 6.48765 6.53316 6.54772 6.69707 6.76673 6.79126 6.93258 7.12809 7.17267 7.59693 7.65281 7.81905 8.00043 8.31616 8.37685 8.60924 8.89143 9.08570 9.70754 11.15222 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009762 B = 0.005143 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2867.464430 B = 5443.487808 C = 6605.429747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.083 4.083 3 C -0.136 4.136 4 C -0.132 4.132 5 C 0.125 3.875 6 N -0.564 5.564 7 C 0.223 3.777 8 C -0.501 4.501 9 H 0.045 0.955 10 C 0.084 3.916 11 N -0.883 5.883 12 Si 0.884 3.116 13 H -0.284 1.284 14 H -0.289 1.289 15 H -0.282 1.282 16 C 0.565 3.435 17 O -0.563 6.563 18 C 0.156 3.844 19 C -0.216 4.216 20 C 0.153 3.847 21 N -0.552 5.552 22 C 0.472 3.528 23 N -0.424 5.424 24 C 0.048 3.952 25 C -0.120 4.120 26 C -0.132 4.132 27 C 0.036 3.964 28 N -0.419 5.419 29 H 0.055 0.945 30 H 0.044 0.956 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.048 0.952 36 H 0.044 0.956 37 H 0.060 0.940 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.033 0.967 41 H 0.082 0.918 42 H 0.259 0.741 43 H 0.149 0.851 44 H 0.165 0.835 45 H 0.140 0.860 46 H 0.035 0.965 47 H 0.070 0.930 48 H 0.080 0.920 49 H 0.064 0.936 50 H 0.069 0.931 51 H 0.078 0.922 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.554 -2.115 -8.877 9.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.084 4.084 3 C -0.193 4.193 4 C -0.190 4.190 5 C 0.001 3.999 6 N -0.292 5.292 7 C 0.104 3.896 8 C -0.540 4.540 9 H 0.063 0.937 10 C -0.118 4.118 11 N -0.522 5.522 12 Si 0.714 3.286 13 H -0.210 1.210 14 H -0.214 1.214 15 H -0.208 1.208 16 C 0.351 3.649 17 O -0.443 6.443 18 C 0.005 3.995 19 C -0.241 4.241 20 C -0.015 4.015 21 N -0.273 5.273 22 C 0.117 3.883 23 N -0.143 5.143 24 C -0.077 4.077 25 C -0.159 4.159 26 C -0.170 4.170 27 C -0.092 4.092 28 N -0.138 5.138 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.079 0.921 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.051 0.949 41 H 0.099 0.901 42 H 0.068 0.932 43 H 0.167 0.833 44 H 0.182 0.818 45 H 0.157 0.843 46 H 0.053 0.947 47 H 0.089 0.911 48 H 0.098 0.902 49 H 0.083 0.917 50 H 0.088 0.912 51 H 0.097 0.903 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.032 -2.109 -8.022 8.295 hybrid contribution 0.942 -0.563 0.303 1.138 sum 0.910 -2.671 -7.720 8.219 Atomic orbital electron populations 1.22005 0.94209 1.02974 1.00787 1.20930 0.96310 0.95064 0.96115 1.21785 1.00778 0.95332 1.01453 1.21803 1.01462 0.99696 0.95993 1.21487 1.00322 0.81207 0.96867 1.48236 1.19324 1.05836 1.55767 1.20300 0.77077 0.96619 0.95607 1.21128 0.93677 1.41260 0.97940 0.93677 1.24530 0.95137 0.95097 0.97018 1.69742 0.98438 1.47185 1.36881 0.86798 0.76973 0.79207 0.85664 1.21033 1.21435 1.20806 1.17735 0.84554 0.83861 0.78729 1.90665 1.20498 1.80084 1.53036 1.21644 0.89990 0.95474 0.92430 1.22637 1.02825 0.94718 1.03885 1.22882 0.91130 0.94284 0.93189 1.68118 1.07978 1.38889 1.12334 1.21494 0.93259 0.85871 0.87673 1.61203 0.98872 1.05499 1.48773 1.23491 0.86698 1.01891 0.95621 1.22475 0.97037 0.93563 1.02788 1.22439 0.95040 0.98004 1.01501 1.22924 0.95793 0.87780 1.02656 1.69270 1.14455 1.14730 1.15334 0.92613 0.93737 0.91231 0.92795 0.92887 0.92654 0.93265 0.93731 0.92080 0.90350 0.90713 0.94882 0.90082 0.93151 0.83334 0.81800 0.84268 0.94706 0.91135 0.90161 0.91712 0.91178 0.90335 0.90523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 7.38 37.16 0.27 -1.94 16 2 C -0.08 -1.27 0.85 -154.51 -0.13 -1.40 16 3 C -0.14 -1.71 8.47 37.15 0.31 -1.40 16 4 C -0.13 -2.07 7.24 37.16 0.27 -1.80 16 5 C 0.12 2.24 4.59 -4.04 -0.02 2.23 16 6 N -0.56 -11.69 1.99 -175.94 -0.35 -12.04 16 7 C 0.22 5.12 3.60 -5.19 -0.02 5.10 16 8 C -0.50 -12.95 8.07 -34.44 -0.28 -13.22 16 9 H 0.04 1.25 7.81 -52.48 -0.41 0.84 16 10 C 0.08 2.18 5.46 -17.82 -0.10 2.08 16 11 N -0.88 -22.45 11.79 55.43 0.65 -21.80 16 12 Si 0.88 21.50 29.54 -169.99 -5.02 16.48 16 13 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 15 H -0.28 -7.16 7.11 56.52 0.40 -6.75 16 16 C 0.57 11.94 6.02 -12.04 -0.07 11.87 16 17 O -0.56 -12.13 14.70 5.39 0.08 -12.05 16 18 C 0.16 3.19 6.65 -82.65 -0.55 2.64 16 19 C -0.22 -3.66 9.71 -38.91 -0.38 -4.03 16 20 C 0.15 2.33 11.30 -17.22 -0.19 2.13 16 21 N -0.55 -9.82 8.12 -13.94 -0.11 -9.93 16 22 C 0.47 9.55 6.98 -322.94 -2.25 7.29 16 23 N -0.42 -8.23 5.36 -171.48 -0.92 -9.15 16 24 C 0.05 0.87 6.31 -1.90 -0.01 0.86 16 25 C -0.12 -1.76 7.06 -24.87 -0.18 -1.94 16 26 C -0.13 -1.72 6.93 -25.39 -0.18 -1.89 16 27 C 0.04 0.57 6.33 -2.77 -0.02 0.55 16 28 N -0.42 -9.08 5.02 -10.49 -0.05 -9.13 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 1.24 5.76 -51.93 -0.30 0.94 16 32 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.05 0.86 6.82 -51.93 -0.35 0.50 16 36 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.06 1.00 7.43 -51.93 -0.39 0.62 16 38 H 0.08 1.42 8.10 -51.93 -0.42 1.00 16 39 H 0.07 1.36 7.27 -51.93 -0.38 0.99 16 40 H 0.03 0.79 5.95 -51.93 -0.31 0.48 16 41 H 0.08 1.96 5.20 -52.12 -0.27 1.69 16 42 H 0.26 6.47 8.31 -40.82 -0.34 6.13 16 43 H 0.15 2.24 7.74 -52.49 -0.41 1.84 16 44 H 0.16 1.76 8.06 -52.48 -0.42 1.34 16 45 H 0.14 2.97 6.58 -51.93 -0.34 2.63 16 46 H 0.03 0.60 7.99 -51.93 -0.42 0.19 16 47 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 49 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 50 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 51 H 0.08 1.22 6.46 -51.93 -0.34 0.89 16 52 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 399.84 15.07 6.03 6.03 Total: -1.00 -28.21 399.84 -11.75 -39.96 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -8.53 Total: 4.52 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: -3.52 Total: 7.12 kcal Atomic # 7 Polarization: -61.27 SS G_CDS: -0.78 Total: -62.05 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.08 Total: -12.05 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -28.21 -11.75 -39.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265765999.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.190 kcal (2) G-P(sol) polarization free energy of solvation -28.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds