Wall clock time and date at job start Wed Apr 1 2020 04:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.46887 * 2 1 4 4 C 1.53005 * 109.46788 * 119.99185 * 2 1 3 5 5 C 1.52995 * 109.47252 * 174.99845 * 4 2 1 6 6 N 1.46494 * 109.47499 * 180.02562 * 5 4 2 7 7 C 1.46496 * 120.00586 * 262.99023 * 6 5 4 8 8 C 1.50701 * 109.47338 * 270.00375 * 7 6 5 9 9 H 1.08002 * 119.99820 * 359.97438 * 8 7 6 10 10 C 1.37875 * 119.99841 * 179.97438 * 8 7 6 11 11 N 1.31517 * 119.99675 * 179.97438 * 10 8 7 12 12 Si 1.86799 * 120.00440 * 359.97438 * 10 8 7 13 13 H 1.48500 * 109.47319 * 89.99879 * 12 10 8 14 14 H 1.48501 * 109.46971 * 210.00438 * 12 10 8 15 15 H 1.48507 * 109.46796 * 329.99821 * 12 10 8 16 16 C 1.34775 * 119.99768 * 82.98825 * 6 5 4 17 17 O 1.21480 * 120.00473 * 183.71235 * 16 6 5 18 18 C 1.48471 * 120.00149 * 3.71770 * 16 6 5 19 19 C 1.39506 * 120.50734 * 173.63864 * 18 16 6 20 20 C 1.38769 * 118.42275 * 179.74341 * 19 18 16 21 21 N 1.32130 * 119.25063 * 0.25939 * 20 19 18 22 22 C 1.32566 * 120.95574 * 359.97438 * 21 20 19 23 23 N 1.38440 * 119.13841 * 180.02562 * 22 21 20 24 24 C 1.48528 * 111.00112 * 242.60894 * 23 22 21 25 25 C 1.54939 * 103.22515 * 159.72351 * 24 23 22 26 26 C 1.54597 * 102.92214 * 322.58138 * 25 24 23 27 27 C 1.47904 * 110.99688 * 0.02562 * 23 22 21 28 28 N 1.32287 * 121.72635 * 0.02562 * 22 21 20 29 29 H 1.08998 * 109.47364 * 300.00861 * 1 2 3 30 30 H 1.09003 * 109.46818 * 60.00430 * 1 2 3 31 31 H 1.08996 * 109.46924 * 180.02562 * 1 2 3 32 32 H 1.08989 * 109.47476 * 239.99399 * 2 1 3 33 33 H 1.09001 * 109.47574 * 59.99876 * 3 2 1 34 34 H 1.09000 * 109.46743 * 179.97438 * 3 2 1 35 35 H 1.09003 * 109.47040 * 299.99434 * 3 2 1 36 36 H 1.09004 * 109.46717 * 55.00003 * 4 2 1 37 37 H 1.09002 * 109.47400 * 295.00582 * 4 2 1 38 38 H 1.09008 * 109.46880 * 59.99958 * 5 4 2 39 39 H 1.09002 * 109.47519 * 300.00664 * 5 4 2 40 40 H 1.09007 * 109.46750 * 29.99797 * 7 6 5 41 41 H 1.08994 * 109.47515 * 149.99634 * 7 6 5 42 42 H 0.96999 * 120.00156 * 179.97438 * 11 10 8 43 43 H 1.08005 * 120.78554 * 0.02562 * 19 18 16 44 44 H 1.08006 * 120.37105 * 180.22655 * 20 19 18 45 45 H 1.09004 * 110.66591 * 278.15394 * 24 23 22 46 46 H 1.08998 * 110.67282 * 41.28243 * 24 23 22 47 47 H 1.09003 * 110.72216 * 204.22426 * 25 24 23 48 48 H 1.08995 * 110.88077 * 81.01328 * 25 24 23 49 49 H 1.09001 * 110.30723 * 263.04923 * 26 25 24 50 50 H 1.08999 * 110.30763 * 140.87453 * 26 25 24 51 51 H 1.08999 * 109.91590 * 333.50006 * 27 23 22 52 52 H 1.08996 * 109.91881 * 94.79879 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5648 -0.8310 1.1882 6 7 4.0530 -1.5220 2.3842 7 6 4.5461 -0.7491 3.5268 8 6 6.0254 -0.5083 3.3697 9 1 6.5463 -0.8929 2.5053 10 6 6.7138 0.2031 4.3294 11 7 8.0049 0.4128 4.1925 12 14 5.8128 0.8689 5.8241 13 1 5.8403 -0.1433 6.9103 14 1 6.4777 2.1126 6.2894 15 1 4.4041 1.1670 5.4607 16 6 4.0485 -2.8688 2.4332 17 8 4.3897 -3.4408 3.4492 18 6 3.6267 -3.6536 1.2456 19 6 3.7428 -5.0438 1.2376 20 6 3.3304 -5.7345 0.1069 21 7 2.8490 -5.0598 -0.9221 22 6 2.7552 -3.7379 -0.8870 23 7 2.2445 -3.0690 -1.9862 24 6 3.2616 -2.1624 -2.5775 25 6 2.7370 -1.9320 -4.0171 26 6 2.1605 -3.3143 -4.4004 27 6 1.8763 -4.0174 -3.0598 28 7 3.1368 -3.0413 0.1708 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8898 33 1 1.6767 1.9564 0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8901 36 1 1.6053 -1.7197 1.2954 37 1 1.7516 -0.1581 2.1371 38 1 3.9994 0.1676 1.1422 39 1 3.8532 -1.3940 0.3006 40 1 4.0250 0.2074 3.5705 41 1 4.3641 -1.3044 4.4469 42 1 8.4892 0.9135 4.8674 43 1 4.1398 -5.5703 2.0930 44 1 3.4028 -6.8115 0.0682 45 1 3.3042 -1.2218 -2.0284 46 1 4.2401 -2.6424 -2.5968 47 1 3.5527 -1.6555 -4.6852 48 1 1.9561 -1.1716 -4.0289 49 1 2.8903 -3.8815 -4.9780 50 1 1.2376 -3.1951 -4.9679 51 1 2.4797 -4.9215 -2.9796 52 1 0.8176 -4.2667 -2.9881 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265808353.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:47 Heat of formation + Delta-G solvation = 44.864954 kcal Electronic energy + Delta-G solvation = -32556.634799 eV Core-core repulsion = 28557.452172 eV Total energy + Delta-G solvation = -3999.182628 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.51129 -39.36156 -38.40090 -36.73570 -34.66169 -33.90712 -33.14997 -32.43733 -29.86930 -29.31974 -29.19921 -27.73894 -26.93501 -25.30868 -24.07917 -23.11029 -22.65906 -21.44847 -21.06198 -19.69225 -19.29948 -17.86736 -17.36641 -16.91785 -16.30355 -16.14968 -15.71160 -15.35709 -15.29060 -14.74887 -14.40555 -14.24152 -14.09867 -13.94443 -13.57363 -13.50023 -13.21948 -12.91420 -12.71652 -12.51853 -12.42437 -12.29748 -12.04054 -11.74209 -11.68285 -11.60192 -11.49943 -11.26462 -11.09648 -10.97703 -10.76961 -10.73723 -10.59210 -10.43915 -10.32540 -10.16742 -10.10655 -9.94115 -9.72980 -9.49186 -8.89660 -8.60133 -8.48459 -7.70287 -6.10141 -4.09401 0.64321 0.93034 2.97609 3.18915 3.29082 3.34990 3.37132 3.58546 3.88222 3.98877 4.28262 4.38740 4.51221 4.57052 4.65338 4.76919 4.97840 5.04884 5.14343 5.17486 5.20471 5.23018 5.23593 5.25296 5.49560 5.55158 5.56633 5.61999 5.69311 5.74660 5.76904 5.77691 5.89891 5.94447 5.99044 6.05758 6.07192 6.13232 6.17111 6.29589 6.31686 6.46732 6.48225 6.58778 6.68986 6.71716 6.85585 6.93806 7.05711 7.33050 7.57878 7.96632 8.17025 8.42890 8.76719 8.93194 9.49615 11.03059 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011620 B = 0.003861 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.143042 B = 7249.745710 C = 8380.103800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.089 4.089 3 C -0.151 4.151 4 C -0.113 4.113 5 C 0.102 3.898 6 N -0.562 5.562 7 C 0.213 3.787 8 C -0.529 4.529 9 H 0.075 0.925 10 C 0.074 3.926 11 N -0.896 5.896 12 Si 0.875 3.125 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.265 1.265 16 C 0.556 3.444 17 O -0.528 6.528 18 C 0.168 3.832 19 C -0.202 4.202 20 C 0.168 3.832 21 N -0.546 5.546 22 C 0.472 3.528 23 N -0.440 5.440 24 C 0.048 3.952 25 C -0.124 4.124 26 C -0.132 4.132 27 C 0.039 3.961 28 N -0.482 5.482 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.079 0.921 33 H 0.051 0.949 34 H 0.059 0.941 35 H 0.047 0.953 36 H 0.059 0.941 37 H 0.051 0.949 38 H 0.074 0.926 39 H 0.107 0.893 40 H 0.034 0.966 41 H 0.038 0.962 42 H 0.265 0.735 43 H 0.159 0.841 44 H 0.173 0.827 45 H 0.101 0.899 46 H 0.053 0.947 47 H 0.078 0.922 48 H 0.080 0.920 49 H 0.070 0.930 50 H 0.075 0.925 51 H 0.084 0.916 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.378 -6.610 -17.229 23.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.108 4.108 3 C -0.208 4.208 4 C -0.151 4.151 5 C -0.021 4.021 6 N -0.290 5.290 7 C 0.093 3.907 8 C -0.568 4.568 9 H 0.093 0.907 10 C -0.128 4.128 11 N -0.535 5.535 12 Si 0.701 3.299 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.190 1.190 16 C 0.339 3.661 17 O -0.405 6.405 18 C 0.019 3.981 19 C -0.226 4.226 20 C 0.001 3.999 21 N -0.265 5.265 22 C 0.116 3.884 23 N -0.161 5.161 24 C -0.078 4.078 25 C -0.162 4.162 26 C -0.170 4.170 27 C -0.088 4.088 28 N -0.203 5.203 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.124 0.876 40 H 0.052 0.948 41 H 0.056 0.944 42 H 0.075 0.925 43 H 0.176 0.824 44 H 0.190 0.810 45 H 0.119 0.881 46 H 0.072 0.928 47 H 0.096 0.904 48 H 0.099 0.901 49 H 0.088 0.912 50 H 0.093 0.907 51 H 0.102 0.898 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.845 -5.955 -17.188 23.479 hybrid contribution 0.544 -0.480 1.422 1.596 sum -14.301 -6.435 -15.766 22.237 Atomic orbital electron populations 1.21761 0.95955 1.01148 1.00812 1.21015 0.95001 0.95703 0.99040 1.21933 1.01575 0.96254 1.01071 1.21852 0.96175 1.00048 0.97058 1.22150 0.93242 0.98080 0.88657 1.47874 1.58509 1.04472 1.18127 1.19790 0.95657 0.90673 0.84586 1.21283 0.91247 1.35107 1.09130 0.90721 1.24828 0.94710 0.95538 0.97731 1.69893 1.07435 1.40751 1.35379 0.86871 0.80347 0.78873 0.83776 1.19850 1.21013 1.18958 1.17706 0.79770 0.82853 0.85746 1.90763 1.48851 1.69969 1.30880 1.21984 0.91612 0.92195 0.92326 1.22814 1.03013 0.95005 1.01784 1.23079 0.89130 1.00619 0.87083 1.68147 1.18964 1.09249 1.30189 1.21349 0.89243 0.85570 0.92249 1.61354 1.33845 1.16474 1.04382 1.23334 0.92255 0.97258 0.94903 1.22524 1.01115 0.97606 0.94922 1.22455 1.01621 0.96131 0.96810 1.22940 1.02650 0.95290 0.87955 1.68729 1.13396 1.38327 0.99801 0.93398 0.93293 0.93126 0.90227 0.93006 0.92155 0.93344 0.92275 0.93018 0.90752 0.87592 0.94777 0.94371 0.92521 0.82356 0.80981 0.88074 0.92832 0.90351 0.90126 0.91169 0.90662 0.89824 0.89888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.19 37.16 0.34 -1.23 16 2 C -0.09 -1.10 2.92 -90.61 -0.26 -1.36 16 3 C -0.15 -1.80 8.95 37.16 0.33 -1.47 16 4 C -0.11 -1.71 4.38 -26.73 -0.12 -1.83 16 5 C 0.10 1.78 4.74 -4.05 -0.02 1.76 16 6 N -0.56 -12.04 2.47 -175.94 -0.44 -12.47 16 7 C 0.21 5.26 4.23 -5.19 -0.02 5.24 16 8 C -0.53 -15.17 9.94 -34.44 -0.34 -15.52 16 9 H 0.07 2.35 8.06 -52.49 -0.42 1.93 16 10 C 0.07 2.16 5.47 -17.82 -0.10 2.07 16 11 N -0.90 -27.49 13.96 55.43 0.77 -26.72 16 12 Si 0.87 21.53 27.47 -169.99 -4.67 16.86 16 13 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 15 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 16 C 0.56 11.81 7.61 -12.04 -0.09 11.72 16 17 O -0.53 -12.83 15.99 5.38 0.09 -12.75 16 18 C 0.17 2.88 6.54 -82.65 -0.54 2.34 16 19 C -0.20 -2.85 9.71 -38.91 -0.38 -3.23 16 20 C 0.17 1.93 11.30 -17.23 -0.19 1.73 16 21 N -0.55 -6.93 8.12 -13.94 -0.11 -7.05 16 22 C 0.47 6.42 6.98 -322.93 -2.25 4.17 16 23 N -0.44 -5.00 5.35 -171.44 -0.92 -5.92 16 24 C 0.05 0.49 6.16 -1.90 -0.01 0.47 16 25 C -0.12 -0.91 7.06 -24.87 -0.18 -1.08 16 26 C -0.13 -0.92 6.93 -25.36 -0.18 -1.10 16 27 C 0.04 0.36 6.34 -2.74 -0.02 0.34 16 28 N -0.48 -7.39 4.43 -10.49 -0.05 -7.43 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.97 6.33 -51.94 -0.33 0.64 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.76 6.56 -51.93 -0.34 0.42 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.96 6.87 -51.93 -0.36 0.60 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.07 1.34 6.44 -51.92 -0.33 1.01 16 39 H 0.11 1.79 5.18 -52.23 -0.27 1.52 16 40 H 0.03 0.81 7.13 -51.92 -0.37 0.44 16 41 H 0.04 1.00 6.80 -51.93 -0.35 0.64 16 42 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 43 H 0.16 2.12 7.74 -52.48 -0.41 1.72 16 44 H 0.17 1.27 8.06 -52.48 -0.42 0.85 16 45 H 0.10 1.07 6.51 -51.93 -0.34 0.73 16 46 H 0.05 0.59 7.99 -51.93 -0.42 0.17 16 47 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 48 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 49 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 50 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 51 H 0.08 0.85 6.46 -51.93 -0.34 0.51 16 52 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 404.99 15.07 6.10 6.10 Total: -1.00 -33.11 404.99 -11.76 -44.87 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -8.51 Total: 1.47 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: -4.03 Total: 3.03 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: -0.74 Total: -59.59 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.09 Total: -12.75 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.11 -11.76 -44.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265808353.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.736 kcal (2) G-P(sol) polarization free energy of solvation -33.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds