Wall clock time and date at job start Wed Apr 1 2020 05:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50704 * 119.99964 * 2 1 4 4 C 1.50699 * 119.99903 * 180.02562 * 2 1 3 5 5 N 1.46498 * 109.47067 * 94.99920 * 4 2 1 6 6 C 1.36742 * 127.13466 * 269.50715 * 5 4 2 7 7 C 1.50701 * 126.34708 * 0.06494 * 6 5 4 8 8 H 1.08992 * 110.75015 * 359.29226 * 7 6 5 9 9 C 1.55309 * 110.84829 * 122.76801 * 7 6 5 10 10 C 1.55208 * 100.82257 * 152.17554 * 9 7 6 11 11 O 1.43643 * 105.26393 * 323.81500 * 10 9 7 12 12 C 1.43234 * 109.97026 * 24.28816 * 11 10 9 13 13 N 1.30296 * 107.30423 * 180.02562 * 6 5 4 14 14 N 1.28528 * 110.05547 * 359.73371 * 13 6 5 15 15 C 1.31224 * 109.85826 * 0.44687 * 14 13 6 16 16 N 1.38564 * 126.47234 * 179.82108 * 15 14 13 17 17 C 1.46905 * 111.00306 * 255.48201 * 16 15 14 18 18 C 1.50699 * 109.47262 * 199.75945 * 17 16 15 19 19 H 1.08008 * 119.99737 * 0.02562 * 18 17 16 20 20 C 1.37872 * 120.00225 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99758 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00229 * 179.72799 * 20 18 17 23 23 H 1.48499 * 109.47335 * 180.27878 * 22 20 18 24 24 H 1.48504 * 109.46723 * 300.27237 * 22 20 18 25 25 H 1.48498 * 109.47292 * 60.27307 * 22 20 18 26 26 C 1.46907 * 111.00193 * 19.43476 * 16 15 14 27 27 C 1.53001 * 109.47090 * 66.04350 * 26 16 15 28 28 C 1.52998 * 117.49982 * 243.75114 * 27 26 16 29 29 C 1.52997 * 117.50198 * 175.08850 * 27 26 16 30 30 H 1.07998 * 119.99943 * 179.97438 * 1 2 3 31 31 H 1.07999 * 119.99853 * 359.97438 * 1 2 3 32 32 H 1.08994 * 109.47301 * 270.00303 * 3 2 1 33 33 H 1.08998 * 109.46814 * 30.00555 * 3 2 1 34 34 H 1.09000 * 109.46542 * 150.00278 * 3 2 1 35 35 H 1.09001 * 109.47131 * 334.99560 * 4 2 1 36 36 H 1.09005 * 109.46792 * 214.99590 * 4 2 1 37 37 H 1.09001 * 111.12408 * 270.24152 * 9 7 6 38 38 H 1.08998 * 111.12184 * 34.40455 * 9 7 6 39 39 H 1.09007 * 110.36706 * 204.79519 * 10 9 7 40 40 H 1.08999 * 110.12807 * 82.71597 * 10 9 7 41 41 H 1.08999 * 109.82762 * 238.77488 * 12 11 10 42 42 H 1.08994 * 109.90926 * 117.84665 * 12 11 10 43 43 H 1.08995 * 109.47180 * 79.76325 * 17 16 15 44 44 H 1.08996 * 109.46593 * 319.75816 * 17 16 15 45 45 H 0.96997 * 120.00329 * 359.73028 * 21 20 18 46 46 H 1.08994 * 109.47257 * 186.04477 * 26 16 15 47 47 H 1.08998 * 109.46873 * 306.04523 * 26 16 15 48 48 H 1.09007 * 115.54690 * 29.41710 * 27 26 16 49 49 H 1.09000 * 117.49827 * 359.97438 * 28 27 26 50 50 H 1.08998 * 117.49975 * 145.01755 * 28 27 26 51 51 H 1.08992 * 117.50252 * 214.97980 * 29 27 26 52 52 H 1.09003 * 117.49449 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 7 2.4119 -1.6672 -1.3767 6 6 1.6719 -2.4220 -2.2442 7 6 0.3285 -3.0448 -1.9643 8 1 0.0062 -2.8263 -0.9463 9 6 -0.7294 -2.5634 -2.9945 10 6 -1.6994 -3.7750 -3.0040 11 8 -0.8608 -4.9319 -2.8566 12 6 0.3664 -4.5679 -2.2137 13 7 2.3433 -2.5021 -3.3580 14 7 3.4460 -1.8497 -3.2559 15 6 3.5424 -1.3219 -2.0584 16 7 4.5913 -0.5540 -1.5787 17 6 5.4340 -1.3297 -0.6587 18 6 6.2393 -0.3884 0.1994 19 1 6.1352 0.6794 0.0742 20 6 7.1082 -0.8901 1.1450 21 7 7.2338 -2.1903 1.2984 22 14 8.1121 0.2765 2.2035 23 1 8.9675 -0.5076 3.1301 24 1 8.9695 1.1208 1.3332 25 1 7.1975 1.1439 2.9885 26 6 5.3875 -0.0017 -2.6829 27 6 4.5389 0.9952 -3.4747 28 6 4.2286 0.6563 -4.9340 29 6 5.2257 1.7692 -4.6016 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5400 0.9353 0.0004 32 1 2.2452 1.6198 -1.0276 33 1 1.4745 2.0647 0.5139 34 1 3.0160 1.1747 0.5138 35 1 1.4386 -2.0856 0.4335 36 1 2.9743 -1.1990 0.5889 37 1 -1.2296 -1.6582 -2.6500 38 1 -0.2812 -2.4129 -3.9766 39 1 -2.2422 -3.8190 -3.9482 40 1 -2.3964 -3.7040 -2.1690 41 1 1.2093 -4.8161 -2.8586 42 1 0.4590 -5.0958 -1.2647 43 1 6.1085 -1.9653 -1.2324 44 1 4.8023 -1.9502 -0.0233 45 1 6.7123 -2.7961 0.7490 46 1 6.2638 0.5063 -2.2804 47 1 5.7064 -0.8102 -3.3407 48 1 3.7689 1.5146 -2.9039 49 1 4.6295 -0.2767 -5.3302 50 1 3.2548 0.9531 -5.3236 51 1 4.9075 2.7975 -4.7726 52 1 6.2824 1.5684 -4.7786 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358803439.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:46 Heat of formation + Delta-G solvation = 82.274095 kcal Electronic energy + Delta-G solvation = -32562.111727 eV Core-core repulsion = 28564.551282 eV Total energy + Delta-G solvation = -3997.560445 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 2.65 seconds Orbital eigenvalues (eV) -42.66825 -39.40950 -37.91736 -36.80042 -35.74370 -33.47208 -33.11196 -32.61055 -29.94835 -28.30955 -27.44086 -27.34890 -26.80996 -25.26389 -23.29174 -22.58146 -22.45482 -22.00339 -20.90292 -20.45075 -19.52155 -18.73119 -17.23707 -17.13945 -16.65409 -16.17217 -15.85164 -15.63688 -15.03482 -14.87749 -14.74317 -14.20227 -14.07001 -13.93086 -13.82178 -13.55396 -13.33245 -12.98649 -12.62513 -12.35744 -12.32523 -12.23516 -11.86709 -11.73799 -11.69709 -11.60310 -11.46993 -11.22171 -11.16434 -11.13002 -11.05894 -10.91465 -10.67105 -10.20958 -10.17097 -9.95127 -9.80151 -9.69019 -9.58382 -9.31854 -9.26575 -8.66369 -8.56535 -7.63446 -6.56404 -4.29323 1.79345 2.12437 2.80383 3.21209 3.34357 3.35507 3.54449 3.66613 4.11004 4.22915 4.31874 4.40744 4.45926 4.56884 4.62499 4.66307 4.82044 4.93409 5.01126 5.07784 5.15987 5.18929 5.28860 5.34932 5.43621 5.48506 5.50943 5.56289 5.61358 5.66486 5.75809 5.77864 5.79221 5.85614 5.89069 5.91182 6.04531 6.10626 6.16811 6.23165 6.30428 6.38827 6.42083 6.45233 6.62534 6.65659 6.72987 6.75732 6.79091 6.98411 7.46114 7.62491 8.04093 8.33669 8.62292 9.17615 9.41638 10.81710 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010158 B = 0.003901 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2755.787008 B = 7175.859444 C = 8001.687452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.126 4.126 3 C -0.115 4.115 4 C 0.141 3.859 5 N -0.466 5.466 6 C 0.159 3.841 7 C -0.027 4.027 8 H 0.095 0.905 9 C -0.141 4.141 10 C 0.053 3.947 11 O -0.380 6.380 12 C 0.064 3.936 13 N -0.278 5.278 14 N -0.327 5.327 15 C 0.388 3.612 16 N -0.446 5.446 17 C 0.192 3.808 18 C -0.593 4.593 19 H 0.063 0.937 20 C 0.021 3.979 21 N -0.906 5.906 22 Si 1.072 2.928 23 H -0.282 1.282 24 H -0.286 1.286 25 H -0.286 1.286 26 C 0.109 3.891 27 C -0.139 4.139 28 C -0.163 4.163 29 C -0.183 4.183 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.115 0.885 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.060 0.940 41 H 0.084 0.916 42 H 0.071 0.929 43 H -0.001 1.001 44 H 0.018 0.982 45 H 0.267 0.733 46 H 0.097 0.903 47 H 0.049 0.951 48 H 0.098 0.902 49 H 0.097 0.903 50 H 0.081 0.919 51 H 0.087 0.913 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.541 3.763 -4.478 16.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.127 4.127 3 C -0.171 4.171 4 C 0.018 3.982 5 N -0.160 5.160 6 C -0.108 4.108 7 C -0.048 4.048 8 H 0.113 0.887 9 C -0.180 4.180 10 C -0.024 4.024 11 O -0.299 6.299 12 C -0.013 4.013 13 N -0.118 5.118 14 N -0.172 5.172 15 C 0.032 3.968 16 N -0.170 5.170 17 C 0.068 3.932 18 C -0.632 4.632 19 H 0.081 0.919 20 C -0.184 4.184 21 N -0.541 5.541 22 Si 0.900 3.100 23 H -0.208 1.208 24 H -0.212 1.212 25 H -0.213 1.213 26 C -0.019 4.019 27 C -0.158 4.158 28 C -0.200 4.200 29 C -0.221 4.221 30 H 0.113 0.887 31 H 0.121 0.879 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.133 0.867 37 H 0.103 0.897 38 H 0.111 0.889 39 H 0.106 0.894 40 H 0.079 0.921 41 H 0.102 0.898 42 H 0.089 0.911 43 H 0.017 0.983 44 H 0.035 0.965 45 H 0.077 0.923 46 H 0.115 0.885 47 H 0.067 0.933 48 H 0.116 0.884 49 H 0.116 0.884 50 H 0.099 0.901 51 H 0.106 0.894 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.224 3.629 -4.447 15.338 hybrid contribution -1.170 0.040 -0.032 1.171 sum -15.394 3.669 -4.479 16.446 Atomic orbital electron populations 1.23743 0.94996 1.01918 1.01437 1.21931 0.95258 0.95901 0.99574 1.20823 1.00826 0.92973 1.02497 1.20934 1.02312 0.94715 0.80204 1.46091 1.15554 1.41002 1.13357 1.23851 0.97473 1.01048 0.88452 1.20928 0.88018 0.95142 1.00692 0.88733 1.23359 0.95435 0.98743 1.00418 1.23409 0.93137 0.84133 1.01688 1.88414 1.28744 1.31984 1.80764 1.23162 0.88059 0.91999 0.98109 1.73832 1.01596 1.17188 1.19157 1.74656 1.13317 1.13160 1.16054 1.22958 0.89701 0.95418 0.88699 1.58925 1.09555 1.31462 1.17093 1.19989 0.90470 0.92964 0.89746 1.21847 1.25889 0.94287 1.21143 0.91862 1.25866 0.96739 0.98593 0.97225 1.70818 1.40629 1.02427 1.40261 0.83483 0.76111 0.74436 0.76017 1.20754 1.21208 1.21264 1.21558 0.94683 0.95810 0.89807 1.22203 1.02014 1.01175 0.90408 1.22894 0.99254 0.99376 0.98517 1.22935 0.98481 0.96556 1.04101 0.88697 0.87896 0.91523 0.92253 0.90063 0.89172 0.86687 0.89658 0.88925 0.89412 0.92143 0.89795 0.91055 0.98345 0.96456 0.92324 0.88531 0.93265 0.88375 0.88450 0.90087 0.89414 0.88963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.89 13.89 29.01 0.40 -1.49 16 2 C -0.13 -1.61 5.64 -101.07 -0.57 -2.18 16 3 C -0.11 -1.54 10.03 36.01 0.36 -1.18 16 4 C 0.14 2.04 6.00 -5.20 -0.03 2.01 16 5 N -0.47 -7.82 2.79 -115.37 -0.32 -8.15 16 6 C 0.16 2.54 6.62 -154.01 -1.02 1.52 16 7 C -0.03 -0.32 3.38 -89.82 -0.30 -0.62 16 8 H 0.09 0.95 6.21 -51.93 -0.32 0.63 16 9 C -0.14 -1.45 6.63 -24.34 -0.16 -1.61 16 10 C 0.05 0.49 7.78 38.33 0.30 0.79 16 11 O -0.38 -4.78 11.36 -35.23 -0.40 -5.18 16 12 C 0.06 0.80 7.40 37.88 0.28 1.08 16 13 N -0.28 -5.22 11.84 32.99 0.39 -4.83 16 14 N -0.33 -6.62 10.38 30.31 0.31 -6.31 16 15 C 0.39 7.57 6.18 -318.89 -1.97 5.60 16 16 N -0.45 -9.06 4.46 -175.88 -0.78 -9.84 16 17 C 0.19 4.59 3.78 -4.97 -0.02 4.57 16 18 C -0.59 -15.15 8.57 -34.44 -0.30 -15.44 16 19 H 0.06 1.61 7.78 -52.48 -0.41 1.20 16 20 C 0.02 0.55 5.46 -17.82 -0.10 0.45 16 21 N -0.91 -25.90 13.65 55.43 0.76 -25.15 16 22 Si 1.07 23.53 29.90 -169.99 -5.08 18.45 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 24 H -0.29 -6.02 7.11 56.52 0.40 -5.62 16 25 H -0.29 -5.97 7.11 56.52 0.40 -5.57 16 26 C 0.11 2.08 4.78 -3.82 -0.02 2.06 16 27 C -0.14 -2.30 5.08 -90.62 -0.46 -2.76 16 28 C -0.16 -2.50 9.58 -26.69 -0.26 -2.76 16 29 C -0.18 -2.55 10.25 -26.69 -0.27 -2.82 16 30 H 0.09 0.84 7.18 -52.49 -0.38 0.46 16 31 H 0.10 0.94 8.04 -52.49 -0.42 0.52 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.06 0.67 8.06 -51.93 -0.42 0.25 16 34 H 0.08 1.26 8.08 -51.93 -0.42 0.85 16 35 H 0.09 1.07 7.08 -51.93 -0.37 0.70 16 36 H 0.12 1.96 6.71 -51.93 -0.35 1.61 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.09 1.12 7.94 -51.93 -0.41 0.71 16 39 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 1.21 7.63 -51.93 -0.40 0.81 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.00 -0.03 7.87 -51.93 -0.41 -0.44 16 44 H 0.02 0.44 6.57 -51.93 -0.34 0.10 16 45 H 0.27 7.68 7.22 -40.82 -0.29 7.38 16 46 H 0.10 1.93 7.41 -51.93 -0.39 1.55 16 47 H 0.05 1.00 7.42 -51.93 -0.39 0.61 16 48 H 0.10 1.68 8.14 -51.93 -0.42 1.25 16 49 H 0.10 1.60 8.03 -51.93 -0.42 1.19 16 50 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 51 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 52 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 419.27 15.07 6.32 6.32 Total: -1.00 -29.72 419.27 -11.67 -41.39 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -8.73 Total: 6.08 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: -4.13 Total: -12.78 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: 0.36 Total: -54.28 kcal Atomic # 8 Polarization: -4.78 SS G_CDS: -0.40 Total: -5.18 kcal Atomic # 14 Polarization: 23.53 SS G_CDS: -5.08 Total: 18.45 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -29.72 -11.67 -41.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358803439.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.665 kcal (2) G-P(sol) polarization free energy of solvation -29.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.66 seconds