Wall clock time and date at job start Wed Apr 1 2020 05:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50698 * 119.99925 * 2 1 4 4 C 1.50698 * 120.00265 * 179.97438 * 2 1 3 5 5 N 1.46505 * 109.46967 * 95.19585 * 4 2 1 6 6 C 1.36743 * 127.13409 * 270.02423 * 5 4 2 7 7 C 1.50694 * 126.35105 * 0.02562 * 6 5 4 8 8 H 1.09002 * 110.43258 * 358.90172 * 7 6 5 9 9 C 1.54816 * 110.48503 * 236.21815 * 7 6 5 10 10 C 1.54995 * 102.09094 * 220.43684 * 9 7 6 11 11 O 1.44387 * 103.48791 * 37.02792 * 10 9 7 12 12 C 1.43736 * 106.97188 * 319.93456 * 11 10 9 13 13 N 1.30301 * 107.30281 * 179.97438 * 6 5 4 14 14 N 1.28530 * 110.05077 * 0.02562 * 13 6 5 15 15 C 1.31217 * 109.86436 * 359.74317 * 14 13 6 16 16 N 1.38573 * 126.47733 * 180.26174 * 15 14 13 17 17 C 1.46906 * 111.00149 * 253.98134 * 16 15 14 18 18 C 1.50697 * 109.47362 * 195.62973 * 17 16 15 19 19 H 1.07997 * 119.99824 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99711 * 180.02562 * 18 17 16 21 21 N 1.31517 * 120.00310 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99717 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47096 * 89.99893 * 22 20 18 24 24 H 1.48500 * 109.46659 * 209.99777 * 22 20 18 25 25 H 1.48500 * 109.46894 * 329.99512 * 22 20 18 26 26 C 1.46905 * 111.00089 * 17.93237 * 16 15 14 27 27 C 1.52997 * 109.47058 * 70.00044 * 26 16 15 28 28 C 1.53001 * 117.50133 * 243.62341 * 27 26 16 29 29 C 1.53001 * 117.50016 * 174.99943 * 27 26 16 30 30 H 1.08007 * 119.99726 * 185.16295 * 1 2 3 31 31 H 1.07996 * 120.00472 * 5.16444 * 1 2 3 32 32 H 1.08995 * 109.47129 * 270.00212 * 3 2 1 33 33 H 1.09005 * 109.46614 * 30.00238 * 3 2 1 34 34 H 1.09002 * 109.47131 * 149.99607 * 3 2 1 35 35 H 1.09006 * 109.47142 * 335.19949 * 4 2 1 36 36 H 1.08999 * 109.47373 * 215.19651 * 4 2 1 37 37 H 1.08997 * 110.91050 * 338.64242 * 9 7 6 38 38 H 1.09006 * 110.90414 * 102.24449 * 9 7 6 39 39 H 1.08992 * 110.62416 * 278.52233 * 10 9 7 40 40 H 1.09008 * 110.61456 * 155.52169 * 10 9 7 41 41 H 1.09005 * 109.88372 * 267.08825 * 12 11 10 42 42 H 1.09001 * 110.00316 * 146.01282 * 12 11 10 43 43 H 1.09006 * 109.46585 * 315.63145 * 17 16 15 44 44 H 1.08999 * 109.47012 * 75.62716 * 17 16 15 45 45 H 0.96998 * 119.99816 * 179.97438 * 21 20 18 46 46 H 1.09002 * 109.47338 * 190.00533 * 26 16 15 47 47 H 1.09003 * 109.47004 * 310.00584 * 26 16 15 48 48 H 1.08999 * 115.54996 * 29.33708 * 27 26 16 49 49 H 1.08999 * 117.49421 * 0.02562 * 28 27 26 50 50 H 1.09000 * 117.49655 * 145.02209 * 28 27 26 51 51 H 1.08993 * 117.50242 * 214.97920 * 29 27 26 52 52 H 1.08998 * 117.49642 * 0.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3050 0.0006 5 7 2.4160 -1.6660 -1.3749 6 6 1.6743 -2.4119 -2.2485 7 6 0.3247 -3.0249 -1.9772 8 1 0.0073 -2.8101 -0.9568 9 6 0.3637 -4.5526 -2.2253 10 6 -0.9966 -4.8028 -2.9248 11 8 -1.1692 -3.6334 -3.7538 12 6 -0.7168 -2.5050 -2.9869 13 7 2.3503 -2.4934 -3.3594 14 7 3.4603 -1.8552 -3.2477 15 6 3.5503 -1.3233 -2.0516 16 7 4.6001 -0.5599 -1.5663 17 6 5.4098 -1.3260 -0.6094 18 6 6.2854 -0.3836 0.1755 19 1 6.2449 0.6782 -0.0176 20 6 7.1391 -0.8771 1.1392 21 7 7.1888 -2.1702 1.3739 22 14 8.2241 0.2913 2.1126 23 1 7.5034 0.7356 3.3325 24 1 9.4759 -0.4055 2.5033 25 1 8.5555 1.4722 1.2755 26 6 5.4293 -0.0462 -2.6647 27 6 4.6479 1.0167 -3.4396 28 6 4.3154 0.7219 -4.9036 29 6 5.3836 1.7607 -4.5559 30 1 -0.5400 -0.9316 0.0842 31 1 -0.5401 0.9314 -0.0842 32 1 2.2451 1.6198 -1.0276 33 1 1.4743 2.0647 0.5139 34 1 3.0159 1.1748 0.5139 35 1 1.4373 -2.0860 0.4320 36 1 2.9725 -1.1996 0.5929 37 1 1.1930 -4.8192 -2.8805 38 1 0.4230 -5.0982 -1.2835 39 1 -1.7986 -4.8744 -2.1902 40 1 -0.9535 -5.7040 -3.5365 41 1 -1.5567 -2.0572 -2.4556 42 1 -0.2587 -1.7665 -3.6448 43 1 4.7524 -1.8647 0.0732 44 1 6.0343 -2.0375 -1.1496 45 1 7.7896 -2.5173 2.0517 46 1 6.3386 0.3960 -2.2575 47 1 5.6920 -0.8647 -3.3351 48 1 3.9147 1.5772 -2.8596 49 1 4.6529 -0.2295 -5.3146 50 1 3.3631 1.0883 -5.2870 51 1 5.1341 2.8103 -4.7106 52 1 6.4241 1.4925 -4.7386 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358803440.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:00 Heat of formation + Delta-G solvation = 86.379642 kcal Electronic energy + Delta-G solvation = -32527.713046 eV Core-core repulsion = 28530.330631 eV Total energy + Delta-G solvation = -3997.382416 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 4.29 seconds Orbital eigenvalues (eV) -42.54932 -39.33111 -37.79050 -36.71790 -35.60506 -33.36359 -32.90855 -32.46197 -29.84031 -28.38665 -27.44125 -27.36508 -26.70321 -25.49374 -23.33557 -22.42565 -22.36191 -21.91327 -20.69993 -20.32011 -19.38504 -18.64339 -17.12219 -16.82993 -16.29656 -16.07711 -15.76338 -15.54599 -15.16491 -14.91147 -14.63281 -14.32257 -14.22560 -13.98421 -13.73129 -13.37217 -13.02555 -12.91996 -12.60658 -12.26089 -12.16494 -11.98892 -11.73102 -11.70538 -11.65030 -11.47124 -11.42382 -11.15947 -11.07474 -11.05827 -10.97582 -10.85310 -10.60548 -10.29892 -10.12303 -9.88808 -9.80167 -9.64271 -9.56722 -9.46283 -9.21696 -8.82051 -8.59892 -7.49554 -6.23487 -4.27638 1.85946 2.25755 2.91461 3.20166 3.27733 3.30217 3.35735 3.81146 4.17883 4.26840 4.31876 4.51781 4.54366 4.64696 4.69466 4.77403 4.93356 5.00674 5.06585 5.12491 5.18025 5.24272 5.37377 5.43927 5.49576 5.55435 5.57779 5.61146 5.64413 5.75112 5.82110 5.86172 5.86746 5.95487 5.97081 5.98530 6.12121 6.18800 6.24869 6.31911 6.41102 6.48789 6.50654 6.53374 6.74659 6.76708 6.80785 6.89583 7.01934 7.16147 7.58632 7.72100 7.87708 8.25356 8.79305 9.30937 9.38225 10.86897 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010335 B = 0.003881 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2708.664023 B = 7212.876055 C = 8019.470243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.126 4.126 3 C -0.115 4.115 4 C 0.141 3.859 5 N -0.468 5.468 6 C 0.156 3.844 7 C -0.026 4.026 8 H 0.093 0.907 9 C -0.144 4.144 10 C 0.049 3.951 11 O -0.371 6.371 12 C 0.066 3.934 13 N -0.276 5.276 14 N -0.331 5.331 15 C 0.392 3.608 16 N -0.453 5.453 17 C 0.201 3.799 18 C -0.515 4.515 19 H 0.069 0.931 20 C 0.061 3.939 21 N -0.894 5.894 22 Si 0.901 3.099 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.271 1.271 26 C 0.106 3.894 27 C -0.138 4.138 28 C -0.166 4.166 29 C -0.184 4.184 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.116 0.884 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.060 0.940 40 H 0.095 0.905 41 H 0.062 0.938 42 H 0.090 0.910 43 H 0.029 0.971 44 H 0.008 0.992 45 H 0.264 0.736 46 H 0.097 0.903 47 H 0.051 0.949 48 H 0.099 0.901 49 H 0.097 0.903 50 H 0.080 0.920 51 H 0.087 0.913 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.648 1.331 -3.168 15.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.127 4.127 3 C -0.172 4.172 4 C 0.018 3.982 5 N -0.162 5.162 6 C -0.111 4.111 7 C -0.047 4.047 8 H 0.111 0.889 9 C -0.183 4.183 10 C -0.028 4.028 11 O -0.290 6.290 12 C -0.012 4.012 13 N -0.115 5.115 14 N -0.176 5.176 15 C 0.036 3.964 16 N -0.177 5.177 17 C 0.078 3.922 18 C -0.553 4.553 19 H 0.088 0.912 20 C -0.141 4.141 21 N -0.532 5.532 22 Si 0.728 3.272 23 H -0.205 1.205 24 H -0.212 1.212 25 H -0.196 1.196 26 C -0.021 4.021 27 C -0.156 4.156 28 C -0.203 4.203 29 C -0.222 4.222 30 H 0.113 0.887 31 H 0.121 0.879 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.107 0.893 36 H 0.134 0.866 37 H 0.111 0.889 38 H 0.101 0.899 39 H 0.078 0.922 40 H 0.113 0.887 41 H 0.080 0.920 42 H 0.108 0.892 43 H 0.047 0.953 44 H 0.026 0.974 45 H 0.074 0.926 46 H 0.116 0.884 47 H 0.069 0.931 48 H 0.117 0.883 49 H 0.116 0.884 50 H 0.099 0.901 51 H 0.105 0.895 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.395 1.230 -4.401 15.103 hybrid contribution 0.676 0.349 2.036 2.173 sum -13.719 1.579 -2.365 14.011 Atomic orbital electron populations 1.23731 0.95019 1.01973 1.01543 1.21950 0.95264 0.95986 0.99464 1.20825 1.00797 0.93004 1.02537 1.20892 1.02342 0.94586 0.80378 1.46057 1.15496 1.41388 1.13227 1.23964 0.97599 1.01312 0.88259 1.20784 0.88018 0.95332 1.00586 0.88868 1.23241 0.99590 0.93298 1.02153 1.23543 0.95311 0.89886 0.94056 1.88900 1.85237 1.15763 1.39055 1.23105 0.94748 0.89901 0.93483 1.73860 1.01167 1.17250 1.19258 1.74642 1.13220 1.13570 1.16147 1.22955 0.89519 0.95133 0.88805 1.59005 1.09626 1.33193 1.15876 1.19907 0.91045 0.92558 0.88680 1.21027 1.21338 0.93947 1.19021 0.91239 1.24966 0.96979 0.95193 0.96995 1.69954 1.38163 1.11932 1.33164 0.86447 0.79800 0.80749 0.80187 1.20540 1.21187 1.19583 1.21570 0.94813 0.95541 0.90188 1.22231 1.02240 1.00752 0.90422 1.22900 0.98798 1.00023 0.98622 1.22914 0.97783 0.97055 1.04405 0.88707 0.87948 0.91524 0.92320 0.89990 0.89277 0.86594 0.88949 0.89897 0.92197 0.88712 0.91984 0.89175 0.95284 0.97435 0.92588 0.88448 0.93053 0.88306 0.88437 0.90126 0.89500 0.89015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.93 13.89 29.01 0.40 -1.53 16 2 C -0.13 -1.62 5.63 -101.07 -0.57 -2.18 16 3 C -0.12 -1.54 10.03 36.00 0.36 -1.18 16 4 C 0.14 2.05 5.95 -5.19 -0.03 2.01 16 5 N -0.47 -7.96 2.79 -115.36 -0.32 -8.28 16 6 C 0.16 2.55 6.36 -154.01 -0.98 1.57 16 7 C -0.03 -0.31 3.45 -90.25 -0.31 -0.63 16 8 H 0.09 0.93 6.32 -51.93 -0.33 0.60 16 9 C -0.14 -1.59 6.70 -24.72 -0.17 -1.76 16 10 C 0.05 0.48 7.72 38.21 0.29 0.77 16 11 O -0.37 -4.82 11.52 -35.23 -0.41 -5.22 16 12 C 0.07 0.78 7.36 37.73 0.28 1.06 16 13 N -0.28 -5.35 11.98 32.99 0.40 -4.95 16 14 N -0.33 -6.85 10.61 30.31 0.32 -6.53 16 15 C 0.39 7.75 6.32 -318.89 -2.02 5.73 16 16 N -0.45 -9.21 4.46 -175.87 -0.78 -10.00 16 17 C 0.20 4.84 4.47 -4.97 -0.02 4.81 16 18 C -0.51 -13.01 8.40 -34.44 -0.29 -13.30 16 19 H 0.07 1.73 7.60 -52.49 -0.40 1.33 16 20 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 21 N -0.89 -24.77 13.29 55.43 0.74 -24.03 16 22 Si 0.90 20.14 29.54 -169.99 -5.02 15.12 16 23 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 26 C 0.11 2.04 4.82 -3.82 -0.02 2.02 16 27 C -0.14 -2.30 5.26 -90.62 -0.48 -2.77 16 28 C -0.17 -2.60 9.83 -26.73 -0.26 -2.86 16 29 C -0.18 -2.61 10.25 -26.73 -0.27 -2.88 16 30 H 0.09 0.84 7.28 -52.48 -0.38 0.46 16 31 H 0.10 0.96 8.05 -52.49 -0.42 0.54 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.06 0.66 8.06 -51.93 -0.42 0.25 16 34 H 0.08 1.26 8.09 -51.93 -0.42 0.84 16 35 H 0.09 1.06 7.07 -51.93 -0.37 0.69 16 36 H 0.12 1.97 6.40 -51.93 -0.33 1.64 16 37 H 0.09 1.25 7.71 -51.93 -0.40 0.85 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.09 0.81 8.14 -51.92 -0.42 0.39 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.09 1.25 7.69 -51.93 -0.40 0.85 16 43 H 0.03 0.74 6.38 -51.93 -0.33 0.40 16 44 H 0.01 0.21 8.06 -51.93 -0.42 -0.21 16 45 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 46 H 0.10 1.95 7.05 -51.93 -0.37 1.59 16 47 H 0.05 1.05 7.27 -51.93 -0.38 0.67 16 48 H 0.10 1.69 8.14 -51.93 -0.42 1.27 16 49 H 0.10 1.64 8.03 -51.93 -0.42 1.22 16 50 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 51 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 52 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 LS Contribution 420.04 15.07 6.33 6.33 Total: -1.00 -29.51 420.04 -11.64 -41.16 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -8.72 Total: 6.02 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -4.18 Total: -9.61 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: 0.35 Total: -53.80 kcal Atomic # 8 Polarization: -4.82 SS G_CDS: -0.41 Total: -5.22 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -29.51 -11.64 -41.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358803440.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.535 kcal (2) G-P(sol) polarization free energy of solvation -29.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.29 seconds