Wall clock time and date at job start Wed Apr 1 2020 05:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50698 * 119.99925 * 2 1 4 4 C 1.50698 * 120.00265 * 179.97438 * 2 1 3 5 5 N 1.46505 * 109.46967 * 95.19585 * 4 2 1 6 6 C 1.36743 * 127.13409 * 270.02423 * 5 4 2 7 7 C 1.50694 * 126.35105 * 0.02562 * 6 5 4 8 8 H 1.09002 * 110.43258 * 358.90172 * 7 6 5 9 9 C 1.54816 * 110.48503 * 236.21815 * 7 6 5 10 10 C 1.54995 * 102.09094 * 220.43684 * 9 7 6 11 11 O 1.44387 * 103.48791 * 37.02792 * 10 9 7 12 12 C 1.43736 * 106.97188 * 319.93456 * 11 10 9 13 13 N 1.30301 * 107.30281 * 179.97438 * 6 5 4 14 14 N 1.28530 * 110.05077 * 0.02562 * 13 6 5 15 15 C 1.31217 * 109.86436 * 359.74317 * 14 13 6 16 16 N 1.38573 * 126.47733 * 180.26174 * 15 14 13 17 17 C 1.46906 * 111.00149 * 253.98134 * 16 15 14 18 18 C 1.50697 * 109.47362 * 195.62973 * 17 16 15 19 19 H 1.07997 * 119.99824 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99711 * 180.02562 * 18 17 16 21 21 N 1.31517 * 120.00310 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99717 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47096 * 89.99893 * 22 20 18 24 24 H 1.48500 * 109.46659 * 209.99777 * 22 20 18 25 25 H 1.48500 * 109.46894 * 329.99512 * 22 20 18 26 26 C 1.46905 * 111.00089 * 17.93237 * 16 15 14 27 27 C 1.52997 * 109.47058 * 70.00044 * 26 16 15 28 28 C 1.53001 * 117.50133 * 243.62341 * 27 26 16 29 29 C 1.53001 * 117.50016 * 174.99943 * 27 26 16 30 30 H 1.08007 * 119.99726 * 185.16295 * 1 2 3 31 31 H 1.07996 * 120.00472 * 5.16444 * 1 2 3 32 32 H 1.08995 * 109.47129 * 270.00212 * 3 2 1 33 33 H 1.09005 * 109.46614 * 30.00238 * 3 2 1 34 34 H 1.09002 * 109.47131 * 149.99607 * 3 2 1 35 35 H 1.09006 * 109.47142 * 335.19949 * 4 2 1 36 36 H 1.08999 * 109.47373 * 215.19651 * 4 2 1 37 37 H 1.08997 * 110.91050 * 338.64242 * 9 7 6 38 38 H 1.09006 * 110.90414 * 102.24449 * 9 7 6 39 39 H 1.08992 * 110.62416 * 278.52233 * 10 9 7 40 40 H 1.09008 * 110.61456 * 155.52169 * 10 9 7 41 41 H 1.09005 * 109.88372 * 267.08825 * 12 11 10 42 42 H 1.09001 * 110.00316 * 146.01282 * 12 11 10 43 43 H 1.09006 * 109.46585 * 315.63145 * 17 16 15 44 44 H 1.08999 * 109.47012 * 75.62716 * 17 16 15 45 45 H 0.96998 * 119.99816 * 179.97438 * 21 20 18 46 46 H 1.09002 * 109.47338 * 190.00533 * 26 16 15 47 47 H 1.09003 * 109.47004 * 310.00584 * 26 16 15 48 48 H 1.08999 * 115.54996 * 29.33708 * 27 26 16 49 49 H 1.08999 * 117.49421 * 0.02562 * 28 27 26 50 50 H 1.09000 * 117.49655 * 145.02209 * 28 27 26 51 51 H 1.08993 * 117.50242 * 214.97920 * 29 27 26 52 52 H 1.08998 * 117.49642 * 0.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3050 0.0006 5 7 2.4160 -1.6660 -1.3749 6 6 1.6743 -2.4119 -2.2485 7 6 0.3247 -3.0249 -1.9772 8 1 0.0073 -2.8101 -0.9568 9 6 0.3637 -4.5526 -2.2253 10 6 -0.9966 -4.8028 -2.9248 11 8 -1.1692 -3.6334 -3.7538 12 6 -0.7168 -2.5050 -2.9869 13 7 2.3503 -2.4934 -3.3594 14 7 3.4603 -1.8552 -3.2477 15 6 3.5503 -1.3233 -2.0516 16 7 4.6001 -0.5599 -1.5663 17 6 5.4098 -1.3260 -0.6094 18 6 6.2854 -0.3836 0.1755 19 1 6.2449 0.6782 -0.0176 20 6 7.1391 -0.8771 1.1392 21 7 7.1888 -2.1702 1.3739 22 14 8.2241 0.2913 2.1126 23 1 7.5034 0.7356 3.3325 24 1 9.4759 -0.4055 2.5033 25 1 8.5555 1.4722 1.2755 26 6 5.4293 -0.0462 -2.6647 27 6 4.6479 1.0167 -3.4396 28 6 4.3154 0.7219 -4.9036 29 6 5.3836 1.7607 -4.5559 30 1 -0.5400 -0.9316 0.0842 31 1 -0.5401 0.9314 -0.0842 32 1 2.2451 1.6198 -1.0276 33 1 1.4743 2.0647 0.5139 34 1 3.0159 1.1748 0.5139 35 1 1.4373 -2.0860 0.4320 36 1 2.9725 -1.1996 0.5929 37 1 1.1930 -4.8192 -2.8805 38 1 0.4230 -5.0982 -1.2835 39 1 -1.7986 -4.8744 -2.1902 40 1 -0.9535 -5.7040 -3.5365 41 1 -1.5567 -2.0572 -2.4556 42 1 -0.2587 -1.7665 -3.6448 43 1 4.7524 -1.8647 0.0732 44 1 6.0343 -2.0375 -1.1496 45 1 7.7896 -2.5173 2.0517 46 1 6.3386 0.3960 -2.2575 47 1 5.6920 -0.8647 -3.3351 48 1 3.9147 1.5772 -2.8596 49 1 4.6529 -0.2295 -5.3146 50 1 3.3631 1.0883 -5.2870 51 1 5.1341 2.8103 -4.7106 52 1 6.4241 1.4925 -4.7386 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358803440.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:53 Heat of formation + Delta-G solvation = 71.868444 kcal Electronic energy + Delta-G solvation = -32528.342299 eV Core-core repulsion = 28530.330631 eV Total energy + Delta-G solvation = -3998.011668 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 8.38 seconds Orbital eigenvalues (eV) -43.97395 -40.27381 -39.27153 -37.85378 -37.07574 -34.79238 -34.49539 -33.72586 -30.89919 -29.91956 -28.98068 -28.47890 -27.79040 -27.18383 -24.42449 -24.22417 -23.32103 -23.12905 -22.18006 -21.58222 -20.71244 -19.73232 -18.71333 -18.26624 -17.47006 -17.26383 -17.15565 -16.82764 -16.54753 -16.14295 -15.85477 -15.76059 -15.36890 -15.28006 -15.01674 -14.75419 -14.39007 -14.06723 -13.87900 -13.82933 -13.62290 -13.16518 -12.99118 -12.92629 -12.82297 -12.67350 -12.61666 -12.48328 -12.41511 -12.34199 -12.29776 -12.22179 -12.14659 -11.90034 -11.68059 -11.36509 -11.17070 -10.96972 -10.87389 -10.70417 -10.64488 -10.31709 -10.15912 -9.11946 -8.27015 -6.38250 0.75652 0.93110 1.42280 1.43439 1.54471 1.68457 1.86986 2.37389 2.83645 2.93825 3.03206 3.08982 3.26101 3.52611 3.58638 3.72119 3.80626 3.85450 3.96279 4.05734 4.09311 4.15196 4.21913 4.28723 4.33713 4.40654 4.44052 4.57484 4.67459 4.71785 4.74377 4.79415 4.80573 4.81987 4.86448 4.88253 4.91004 4.96773 4.98456 5.02564 5.05820 5.07757 5.14845 5.17664 5.29482 5.35365 5.55945 5.57645 5.74236 5.84033 5.91530 5.93909 5.95720 6.53047 6.74599 7.31994 7.84190 8.84372 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010335 B = 0.003881 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2708.664023 B = 7212.876055 C = 8019.470243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.159 4.159 3 C -0.107 4.107 4 C 0.139 3.861 5 N -0.465 5.465 6 C 0.178 3.822 7 C -0.028 4.028 8 H 0.128 0.872 9 C -0.144 4.144 10 C 0.051 3.949 11 O -0.397 6.397 12 C 0.070 3.930 13 N -0.314 5.314 14 N -0.353 5.353 15 C 0.369 3.631 16 N -0.443 5.443 17 C 0.223 3.777 18 C -0.519 4.519 19 H 0.072 0.928 20 C 0.012 3.988 21 N -0.931 5.931 22 Si 0.968 3.032 23 H -0.270 1.270 24 H -0.286 1.286 25 H -0.262 1.262 26 C 0.112 3.888 27 C -0.150 4.150 28 C -0.164 4.164 29 C -0.157 4.157 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.047 0.953 33 H 0.081 0.919 34 H 0.051 0.949 35 H 0.122 0.878 36 H 0.082 0.918 37 H 0.059 0.941 38 H 0.107 0.893 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.062 0.938 43 H 0.012 0.988 44 H -0.036 1.036 45 H 0.266 0.734 46 H 0.084 0.916 47 H 0.030 0.970 48 H 0.095 0.905 49 H 0.080 0.920 50 H 0.089 0.911 51 H 0.113 0.887 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.531 2.488 -2.083 17.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.160 4.160 3 C -0.163 4.163 4 C 0.018 3.982 5 N -0.158 5.158 6 C -0.090 4.090 7 C -0.049 4.049 8 H 0.145 0.855 9 C -0.183 4.183 10 C -0.025 4.025 11 O -0.316 6.316 12 C -0.008 4.008 13 N -0.153 5.153 14 N -0.197 5.197 15 C 0.012 3.988 16 N -0.167 5.167 17 C 0.098 3.902 18 C -0.557 4.557 19 H 0.090 0.910 20 C -0.187 4.187 21 N -0.571 5.571 22 Si 0.793 3.207 23 H -0.195 1.195 24 H -0.212 1.212 25 H -0.187 1.187 26 C -0.015 4.015 27 C -0.168 4.168 28 C -0.201 4.201 29 C -0.194 4.194 30 H 0.139 0.861 31 H 0.138 0.862 32 H 0.066 0.934 33 H 0.099 0.901 34 H 0.070 0.930 35 H 0.140 0.860 36 H 0.100 0.900 37 H 0.078 0.922 38 H 0.126 0.874 39 H 0.111 0.889 40 H 0.121 0.879 41 H 0.115 0.885 42 H 0.081 0.919 43 H 0.030 0.970 44 H -0.018 1.018 45 H 0.075 0.925 46 H 0.102 0.898 47 H 0.049 0.951 48 H 0.113 0.887 49 H 0.098 0.902 50 H 0.107 0.893 51 H 0.131 0.869 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -17.301 2.398 -3.328 17.781 hybrid contribution 1.440 -0.113 1.656 2.197 sum -15.861 2.285 -1.673 16.112 Atomic orbital electron populations 1.24071 0.93807 1.04046 0.96581 1.21754 0.96124 0.94435 1.03704 1.20700 0.99995 0.94427 1.01221 1.21039 1.01694 0.96963 0.78525 1.46323 1.14638 1.40706 1.14148 1.24845 0.98275 0.98905 0.86960 1.21145 0.85453 0.95725 1.02558 0.85460 1.23245 0.99461 0.92685 1.02875 1.23735 0.95196 0.89118 0.94433 1.88876 1.85270 1.16904 1.40557 1.23094 0.95476 0.89329 0.92896 1.73800 1.01547 1.18698 1.21286 1.74542 1.14226 1.13945 1.16991 1.22892 0.90250 0.96348 0.89359 1.58945 1.09302 1.32618 1.15836 1.19464 0.90354 0.91771 0.88568 1.21243 1.21409 0.94080 1.18987 0.91015 1.25822 0.98256 0.96640 0.97952 1.70084 1.39150 1.13877 1.33987 0.85387 0.77731 0.78722 0.78871 1.19543 1.21182 1.18651 1.21478 0.94847 0.95555 0.89663 1.22033 1.03132 1.00934 0.90750 1.22808 0.99885 1.00027 0.97382 1.23029 0.97601 0.97918 1.00875 0.86100 0.86180 0.93371 0.90064 0.93021 0.86040 0.89959 0.92230 0.87447 0.88917 0.87925 0.88479 0.91925 0.97031 1.01835 0.92506 0.89779 0.95125 0.88657 0.90158 0.89269 0.86892 0.88457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 13.89 67.78 0.94 -1.51 16 2 C -0.16 -3.83 5.63 -16.49 -0.09 -3.93 16 3 C -0.11 -2.85 10.03 71.24 0.71 -2.14 16 4 C 0.14 3.99 5.95 85.63 0.51 4.50 16 5 N -0.46 -16.11 2.79 -518.90 -1.45 -17.56 16 6 C 0.18 5.80 6.36 137.63 0.88 6.67 16 7 C -0.03 -0.60 3.45 -10.55 -0.04 -0.64 16 8 H 0.13 1.89 6.32 -2.39 -0.02 1.88 16 9 C -0.14 -2.88 6.70 31.90 0.21 -2.67 16 10 C 0.05 0.84 7.72 72.66 0.56 1.40 16 11 O -0.40 -9.43 11.52 -148.98 -1.72 -11.15 16 12 C 0.07 1.48 7.36 72.35 0.53 2.02 16 13 N -0.31 -12.65 11.98 -49.54 -0.59 -13.25 16 14 N -0.35 -15.48 10.61 -58.01 -0.62 -16.09 16 15 C 0.37 15.43 6.32 260.12 1.64 17.07 16 16 N -0.44 -19.33 4.46 -710.34 -3.17 -22.50 16 17 C 0.22 11.53 4.47 85.56 0.38 11.91 16 18 C -0.52 -27.44 8.40 25.60 0.21 -27.22 16 19 H 0.07 3.69 7.60 -2.91 -0.02 3.67 16 20 C 0.01 0.67 5.46 84.65 0.46 1.13 16 21 N -0.93 -53.51 13.29 21.45 0.28 -53.22 16 22 Si 0.97 41.83 29.54 68.60 2.03 43.86 16 23 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 24 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 25 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 26 C 0.11 4.61 4.82 86.30 0.42 5.03 16 27 C -0.15 -5.15 5.26 -10.79 -0.06 -5.21 16 28 C -0.16 -5.20 9.83 30.60 0.30 -4.90 16 29 C -0.16 -4.32 10.25 30.60 0.31 -4.01 16 30 H 0.12 1.40 7.28 -2.91 -0.02 1.38 16 31 H 0.12 1.66 8.05 -2.91 -0.02 1.63 16 32 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.08 1.72 8.06 -2.38 -0.02 1.70 16 34 H 0.05 1.66 8.09 -2.39 -0.02 1.64 16 35 H 0.12 2.59 7.07 -2.38 -0.02 2.57 16 36 H 0.08 2.94 6.40 -2.39 -0.02 2.92 16 37 H 0.06 1.60 7.71 -2.39 -0.02 1.58 16 38 H 0.11 1.61 8.14 -2.38 -0.02 1.59 16 39 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 41 H 0.10 1.40 8.14 -2.38 -0.02 1.39 16 42 H 0.06 1.68 7.69 -2.39 -0.02 1.66 16 43 H 0.01 0.64 6.38 -2.38 -0.02 0.62 16 44 H -0.04 -2.14 8.06 -2.39 -0.02 -2.16 16 45 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 46 H 0.08 3.60 7.05 -2.39 -0.02 3.59 16 47 H 0.03 1.36 7.27 -2.39 -0.02 1.34 16 48 H 0.10 3.36 8.14 -2.39 -0.02 3.34 16 49 H 0.08 2.83 8.03 -2.39 -0.02 2.81 16 50 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 51 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 52 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -69.79 420.04 3.56 -66.23 By element: Atomic # 1 Polarization: 25.28 SS G_CDS: 0.90 Total: 26.17 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: 7.90 Total: -2.49 kcal Atomic # 7 Polarization: -117.09 SS G_CDS: -5.54 Total: -122.62 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: -1.72 Total: -11.15 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -69.79 3.56 -66.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358803440.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.098 kcal (2) G-P(sol) polarization free energy of solvation -69.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.38 seconds