Wall clock time and date at job start Wed Apr 1 2020 03:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47117 * 2 1 4 4 C 1.52998 * 109.47050 * 239.99971 * 2 1 3 5 5 C 1.50705 * 109.47170 * 60.00000 * 4 2 1 6 6 H 1.08000 * 120.00122 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99827 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00285 * 359.97438 * 7 5 4 9 9 Si 1.86811 * 119.99889 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46909 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.46918 * 119.99829 * 9 7 5 12 12 H 1.48497 * 109.46726 * 239.99889 * 9 7 5 13 13 C 1.53000 * 109.47125 * 120.00113 * 2 1 3 14 14 N 1.46504 * 109.46851 * 299.99632 * 13 2 1 15 15 C 1.34775 * 119.99949 * 179.97438 * 14 13 2 16 16 O 1.21290 * 119.99712 * 0.02562 * 15 14 13 17 17 C 1.50699 * 120.00257 * 180.02562 * 15 14 13 18 18 C 1.53122 * 109.52222 * 180.02562 * 17 15 14 19 19 C 1.53041 * 109.27597 * 182.43788 * 18 17 15 20 20 N 1.46853 * 109.51848 * 59.18342 * 19 18 17 21 21 C 1.39004 * 110.99429 * 174.15854 * 20 19 18 22 22 C 1.39336 * 120.08880 * 179.97438 * 21 20 19 23 23 N 1.31924 * 119.88550 * 179.79114 * 22 21 20 24 24 C 1.32269 * 120.08880 * 0.48767 * 23 22 21 25 25 C 1.38163 * 120.19211 * 359.48573 * 24 23 22 26 26 N 1.32248 * 120.10724 * 0.28068 * 25 24 23 27 27 C 1.46844 * 111.19774 * 298.25284 * 20 19 18 28 28 C 1.53034 * 109.52400 * 61.74674 * 27 20 19 29 29 H 1.09002 * 109.47222 * 300.00130 * 1 2 3 30 30 H 1.08999 * 109.47523 * 60.00141 * 1 2 3 31 31 H 1.09000 * 109.47253 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.46936 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.46808 * 300.00296 * 3 2 1 34 34 H 1.09002 * 109.47181 * 59.99844 * 3 2 1 35 35 H 1.09003 * 109.47267 * 179.97438 * 4 2 1 36 36 H 1.09000 * 109.47185 * 300.00156 * 4 2 1 37 37 H 0.97003 * 120.00181 * 180.02562 * 8 7 5 38 38 H 1.08998 * 109.46859 * 180.02562 * 13 2 1 39 39 H 1.08995 * 109.47454 * 60.00152 * 13 2 1 40 40 H 0.96996 * 119.99968 * 0.02562 * 14 13 2 41 41 H 1.08999 * 109.57100 * 300.16118 * 17 15 14 42 42 H 1.09001 * 109.50131 * 62.50226 * 18 17 15 43 43 H 1.08998 * 109.50393 * 302.38375 * 18 17 15 44 44 H 1.08996 * 109.46396 * 299.16558 * 19 18 17 45 45 H 1.09001 * 109.46144 * 179.19413 * 19 18 17 46 46 H 1.08001 * 120.05833 * 0.02562 * 22 21 20 47 47 H 1.08002 * 119.90807 * 179.77150 * 24 23 22 48 48 H 1.07999 * 119.94631 * 180.25988 * 25 24 23 49 49 H 1.08998 * 109.46235 * 181.76312 * 27 20 19 50 50 H 1.08998 * 109.46227 * 301.72869 * 27 20 19 51 51 H 1.08995 * 109.50679 * 180.88104 * 28 27 20 52 52 H 1.09002 * 109.50256 * 60.75594 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5376 -0.0108 -2.4797 6 1 0.9164 0.8670 -2.3807 7 6 1.8703 -0.4822 -3.7319 8 7 2.6263 -1.5515 -3.8526 9 14 1.2482 0.3988 -5.2572 10 1 0.4236 1.5658 -4.8531 11 1 2.4034 0.8645 -6.0656 12 1 0.4224 -0.5341 -6.0654 13 6 2.0400 -0.7213 1.2492 14 7 1.5517 -0.0306 2.4454 15 6 1.8768 -0.4913 3.6695 16 8 2.5741 -1.4775 3.7808 17 6 1.3741 0.2188 4.9000 18 6 1.8840 -0.5021 6.1510 19 6 1.3208 0.1870 7.3960 20 7 -0.1467 0.1535 7.3538 21 6 -0.6904 0.6540 8.5312 22 6 -2.0731 0.7100 8.6937 23 7 -2.5846 1.1819 9.8144 24 6 -1.7871 1.6103 10.7787 25 6 -0.4155 1.5559 10.6215 26 7 0.1057 1.0800 9.5030 27 6 -0.6611 0.8803 6.1861 28 6 -0.1571 0.2120 4.9050 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 3.1300 -0.7209 -1.2495 36 1 1.6766 -1.7489 -1.2492 37 1 2.8607 -1.8829 -4.7336 38 1 3.1300 -0.7209 1.2494 39 1 1.6767 -1.7489 1.2492 40 1 0.9938 0.7579 2.3564 41 1 1.7342 1.2476 4.9006 42 1 2.9730 -0.4633 6.1748 43 1 1.5566 -1.5416 6.1308 44 1 1.6599 1.2226 7.4226 45 1 1.6704 -0.3325 8.2881 46 1 -2.7249 0.3641 7.9051 47 1 -2.2091 1.9994 11.6935 48 1 0.2321 1.9028 11.4131 49 1 -1.7509 0.8644 6.1995 50 1 -0.3127 1.9126 6.2185 51 1 -0.5262 0.7609 4.0387 52 1 -0.5165 -0.8163 4.8653 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000376492882.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:27 Heat of formation + Delta-G solvation = 1.249852 kcal Electronic energy + Delta-G solvation = -30227.529997 eV Core-core repulsion = 26226.456077 eV Total energy + Delta-G solvation = -4001.073920 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.75276 -40.21928 -38.70693 -37.12469 -34.91913 -33.93906 -33.60177 -32.12877 -31.30694 -30.48989 -27.30789 -26.79171 -26.55332 -25.61943 -25.19625 -23.42786 -23.13462 -22.64796 -20.78958 -19.85271 -18.45218 -18.05042 -17.87065 -17.09644 -16.86861 -16.35149 -15.87430 -15.57615 -15.30547 -14.98301 -14.90256 -14.53788 -14.38174 -14.12632 -13.78956 -13.71303 -13.23536 -13.16585 -13.08787 -12.79765 -12.67992 -12.15132 -12.12157 -12.07360 -11.77044 -11.73927 -11.47502 -11.19726 -11.07393 -11.04008 -10.90132 -10.86091 -10.67864 -10.45030 -10.43452 -10.26880 -9.91304 -9.71592 -9.52664 -9.17799 -8.93787 -8.74813 -8.68331 -8.38612 -6.02318 -4.03778 0.37635 0.72295 2.76419 2.86431 3.28252 3.29218 3.35738 3.37348 3.39878 3.81019 3.88743 4.09717 4.30638 4.35580 4.42999 4.53260 4.67072 4.75364 4.81619 4.91154 4.99731 5.02318 5.13793 5.16465 5.24292 5.33238 5.42956 5.45823 5.53097 5.59364 5.62238 5.71276 5.77344 5.87092 6.08713 6.12646 6.18564 6.18840 6.26287 6.35648 6.52099 6.53817 6.59143 6.73223 6.93958 7.02751 7.03968 7.09562 7.38394 7.61518 7.71670 7.73598 7.96306 8.36851 8.41285 9.01286 9.59592 11.09073 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.027319 B = 0.001773 C = 0.001707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.675935 B =15788.593899 C =16399.265150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.073 4.073 3 C -0.127 4.127 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.128 3.872 14 N -0.720 5.720 15 C 0.512 3.488 16 O -0.543 6.543 17 C -0.111 4.111 18 C -0.099 4.099 19 C 0.067 3.933 20 N -0.469 5.469 21 C 0.270 3.730 22 C 0.039 3.961 23 N -0.419 5.419 24 C 0.008 3.992 25 C 0.081 3.919 26 N -0.479 5.479 27 C 0.061 3.939 28 C -0.109 4.109 29 H 0.028 0.972 30 H 0.067 0.933 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.067 0.933 34 H 0.028 0.972 35 H 0.018 0.982 36 H 0.018 0.982 37 H 0.259 0.741 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.397 0.603 41 H 0.094 0.906 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.052 0.948 45 H 0.090 0.910 46 H 0.170 0.830 47 H 0.168 0.832 48 H 0.169 0.831 49 H 0.090 0.910 50 H 0.052 0.948 51 H 0.083 0.917 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.739 8.509 27.663 29.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.002 4.002 5 C -0.550 4.550 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.005 3.995 14 N -0.372 5.372 15 C 0.298 3.702 16 O -0.420 6.420 17 C -0.133 4.133 18 C -0.137 4.137 19 C -0.060 4.060 20 N -0.186 5.186 21 C 0.035 3.965 22 C -0.126 4.126 23 N -0.133 5.133 24 C -0.151 4.151 25 C -0.079 4.079 26 N -0.200 5.200 27 C -0.065 4.065 28 C -0.147 4.147 29 H 0.047 0.953 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.047 0.953 35 H 0.036 0.964 36 H 0.037 0.963 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.232 0.768 41 H 0.112 0.888 42 H 0.100 0.900 43 H 0.101 0.899 44 H 0.070 0.930 45 H 0.108 0.892 46 H 0.187 0.813 47 H 0.185 0.815 48 H 0.186 0.814 49 H 0.108 0.892 50 H 0.070 0.930 51 H 0.101 0.899 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.261 7.174 27.482 29.317 hybrid contribution -0.244 1.417 -0.882 1.687 sum -7.506 8.590 26.600 28.943 Atomic orbital electron populations 1.21757 0.95268 1.01168 1.00185 1.20904 0.95471 0.95822 0.95114 1.21760 1.00547 0.95919 1.00188 1.19095 0.96359 0.95236 0.89499 1.21218 1.31149 1.12070 0.90515 0.92207 1.25021 0.95324 0.95081 0.99116 1.69974 1.36953 1.23038 1.23348 0.86591 0.78599 0.79669 0.83449 1.19814 1.21137 1.21132 1.21628 0.98892 0.96034 0.82971 1.46228 1.53121 1.31903 1.05930 1.20427 0.80519 0.84723 0.84569 1.90706 1.38091 1.26347 1.86843 1.21434 0.96694 1.01006 0.94166 1.21485 1.01038 1.00529 0.90696 1.22095 0.83583 1.00759 0.99559 1.59056 1.10149 1.49422 1.00006 1.20942 0.91801 0.91403 0.92374 1.23329 0.92463 0.99904 0.96934 1.68363 1.39216 1.05673 1.00002 1.23559 0.91801 1.00499 0.99253 1.23608 0.94868 0.94599 0.94833 1.68418 1.39124 1.10322 1.02094 1.22316 1.00722 0.95353 0.88080 1.21630 0.93505 1.03133 0.96467 0.95295 0.91444 0.93339 0.93378 0.91429 0.95309 0.96359 0.96333 0.93082 0.91876 0.91816 0.76768 0.88753 0.89996 0.89948 0.92975 0.89156 0.81262 0.81486 0.81373 0.89169 0.92991 0.89852 0.89714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 8.05 37.16 0.30 -1.81 16 2 C -0.07 -1.33 0.54 -154.51 -0.08 -1.41 16 3 C -0.13 -2.14 8.05 37.16 0.30 -1.84 16 4 C 0.04 0.86 4.04 -27.88 -0.11 0.74 16 5 C -0.51 -13.36 7.65 -34.44 -0.26 -13.63 16 6 H 0.06 1.50 5.68 -52.49 -0.30 1.20 16 7 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 8 N -0.89 -26.17 13.29 55.43 0.74 -25.44 16 9 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 10 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 13 C 0.13 2.17 4.56 -4.04 -0.02 2.15 16 14 N -0.72 -9.60 4.87 -60.29 -0.29 -9.89 16 15 C 0.51 6.96 7.15 -10.99 -0.08 6.89 16 16 O -0.54 -9.71 15.98 5.55 0.09 -9.62 16 17 C -0.11 -1.05 2.59 -91.65 -0.24 -1.28 16 18 C -0.10 -0.97 4.68 -26.65 -0.12 -1.09 16 19 C 0.07 0.58 4.66 -3.83 -0.02 0.56 16 20 N -0.47 -3.95 4.69 -173.10 -0.81 -4.76 16 21 C 0.27 2.38 6.40 -154.73 -0.99 1.39 16 22 C 0.04 0.32 10.34 -17.10 -0.18 0.14 16 23 N -0.42 -3.64 10.49 -12.88 -0.14 -3.78 16 24 C 0.01 0.05 11.21 -17.39 -0.19 -0.14 16 25 C 0.08 0.53 11.21 -17.40 -0.20 0.33 16 26 N -0.48 -4.28 8.87 -12.24 -0.11 -4.39 16 27 C 0.06 0.41 5.25 -3.84 -0.02 0.38 16 28 C -0.11 -0.82 5.26 -26.65 -0.14 -0.96 16 29 H 0.03 0.38 6.86 -51.93 -0.36 0.02 16 30 H 0.07 1.23 6.62 -51.93 -0.34 0.88 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.07 1.24 6.62 -51.93 -0.34 0.89 16 34 H 0.03 0.38 6.86 -51.93 -0.36 0.03 16 35 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.40 4.35 5.65 -40.82 -0.23 4.12 16 41 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.08 0.94 8.04 -51.93 -0.42 0.53 16 44 H 0.05 0.45 8.12 -51.93 -0.42 0.03 16 45 H 0.09 0.84 7.72 -51.93 -0.40 0.44 16 46 H 0.17 1.06 7.15 -52.49 -0.38 0.68 16 47 H 0.17 0.56 8.06 -52.49 -0.42 0.14 16 48 H 0.17 0.54 8.06 -52.49 -0.42 0.12 16 49 H 0.09 0.47 6.69 -51.93 -0.35 0.12 16 50 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 51 H 0.08 0.52 7.67 -51.93 -0.40 0.12 16 52 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 405.66 15.07 6.11 6.11 Total: -1.00 -32.80 405.66 -10.08 -42.88 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -8.50 Total: 1.07 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -2.15 Total: -8.14 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: -0.61 Total: -48.25 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.09 Total: -9.62 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.80 -10.08 -42.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376492882.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.133 kcal (2) G-P(sol) polarization free energy of solvation -32.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds