Wall clock time and date at job start Wed Apr 1 2020 03:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47089 * 2 1 4 4 C 1.52995 * 109.46879 * 239.99783 * 2 1 3 5 5 C 1.50703 * 109.47072 * 60.00110 * 4 2 1 6 6 H 1.07991 * 119.99977 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99939 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99955 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00142 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.46874 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47217 * 119.99688 * 9 7 5 12 12 H 1.48503 * 109.47274 * 240.00220 * 9 7 5 13 13 C 1.53002 * 109.47059 * 119.99994 * 2 1 3 14 14 N 1.46499 * 109.46945 * 299.99623 * 13 2 1 15 15 C 1.34782 * 119.99565 * 179.97438 * 14 13 2 16 16 O 1.21577 * 120.00204 * 0.02562 * 15 14 13 17 17 N 1.34782 * 119.99722 * 180.02562 * 15 14 13 18 18 C 1.46494 * 119.99960 * 180.02562 * 17 15 14 19 19 H 1.09000 * 110.64643 * 323.30466 * 18 17 15 20 20 C 1.54604 * 110.72243 * 86.45574 * 18 17 15 21 21 C 1.53989 * 105.13785 * 140.49469 * 20 18 17 22 22 N 1.47905 * 107.06120 * 1.22422 * 21 20 18 23 23 C 1.39005 * 111.00140 * 214.15836 * 22 21 20 24 24 C 1.39136 * 119.70582 * 59.86979 * 23 22 21 25 25 C 1.38300 * 119.09630 * 180.02562 * 24 23 22 26 26 C 1.38875 * 118.50617 * 0.02562 * 25 24 23 27 27 C 1.38025 * 119.32870 * 0.02562 * 26 25 24 28 28 N 1.31964 * 120.85841 * 0.02562 * 27 26 25 29 29 C 1.48534 * 105.81854 * 334.67006 * 22 21 20 30 30 H 1.09002 * 109.46821 * 300.00355 * 1 2 3 31 31 H 1.08998 * 109.47134 * 59.99875 * 1 2 3 32 32 H 1.08996 * 109.47570 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47476 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.47153 * 299.99626 * 3 2 1 35 35 H 1.09002 * 109.47579 * 60.00109 * 3 2 1 36 36 H 1.09006 * 109.47006 * 180.02562 * 4 2 1 37 37 H 1.09004 * 109.47342 * 300.00006 * 4 2 1 38 38 H 0.97000 * 120.00084 * 179.97438 * 8 7 5 39 39 H 1.08997 * 109.46946 * 179.97438 * 13 2 1 40 40 H 1.08996 * 109.47034 * 59.99783 * 13 2 1 41 41 H 0.96998 * 120.00034 * 0.02562 * 14 13 2 42 42 H 0.96998 * 119.99877 * 0.02562 * 17 15 14 43 43 H 1.08998 * 110.30810 * 21.57622 * 20 18 17 44 44 H 1.08997 * 110.39174 * 259.45284 * 20 18 17 45 45 H 1.09000 * 109.91581 * 241.87312 * 21 20 18 46 46 H 1.08999 * 110.08333 * 120.67152 * 21 20 18 47 47 H 1.08004 * 120.45453 * 0.05035 * 24 23 22 48 48 H 1.08001 * 120.74435 * 179.97438 * 25 24 23 49 49 H 1.08000 * 120.33470 * 179.97438 * 26 25 24 50 50 H 1.08006 * 119.57087 * 179.72418 * 27 26 25 51 51 H 1.08997 * 110.66806 * 157.63983 * 29 22 21 52 52 H 1.08994 * 110.66652 * 280.77421 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5376 -0.0109 -2.4797 6 1 0.9171 0.8674 -2.3806 7 6 1.8710 -0.4817 -3.7319 8 7 2.6271 -1.5510 -3.8526 9 14 1.2490 0.3993 -5.2572 10 1 0.4244 1.5664 -4.8530 11 1 2.4043 0.8661 -6.0650 12 1 0.4241 -0.5339 -6.0660 13 6 2.0400 -0.7213 1.2493 14 7 1.5517 -0.0306 2.4454 15 6 1.8769 -0.4914 3.6695 16 8 2.5758 -1.4799 3.7811 17 7 1.4273 0.1437 4.7700 18 6 1.7812 -0.3568 6.1005 19 1 1.8056 -1.4465 6.1073 20 6 3.1384 0.2238 6.5602 21 6 2.9592 0.5264 8.0594 22 7 1.5883 0.1091 8.4256 23 6 1.0549 0.9481 9.3971 24 6 0.9153 2.3071 9.1333 25 6 0.3836 3.1304 10.1091 26 6 0.0084 2.5652 11.3209 27 6 0.1761 1.2090 11.5151 28 7 0.6872 0.4475 10.5663 29 6 0.7960 0.1762 7.1710 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.1300 -0.7217 -1.2490 37 1 1.6766 -1.7490 -1.2492 38 1 2.8614 -1.8824 -4.7336 39 1 3.1300 -0.7216 1.2490 40 1 1.6766 -1.7489 1.2493 41 1 0.9938 0.7579 2.3564 42 1 0.8694 0.9322 4.6810 43 1 3.3627 1.1396 6.0135 44 1 3.9333 -0.5076 6.4142 45 1 3.0830 1.5941 8.2401 46 1 3.6872 -0.0358 8.6443 47 1 1.2175 2.7134 8.1793 48 1 0.2637 4.1892 9.9329 49 1 -0.4096 3.1808 12.1036 50 1 -0.1102 0.7662 12.4577 51 1 -0.0837 -0.4640 7.2368 52 1 0.5092 1.2046 6.9517 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000376872044.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:55 Heat of formation + Delta-G solvation = 14.984899 kcal Electronic energy + Delta-G solvation = -29768.219618 eV Core-core repulsion = 25767.741294 eV Total energy + Delta-G solvation = -4000.478324 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.24432 -40.02211 -38.69586 -37.16299 -34.66361 -33.60257 -32.97826 -32.24307 -31.64578 -29.41845 -28.62657 -27.07152 -26.51942 -25.92593 -24.24794 -23.56789 -22.94899 -21.60791 -21.38874 -20.51978 -18.85174 -18.07529 -17.65185 -17.10024 -16.59509 -16.34542 -16.09431 -15.47932 -15.15579 -15.03302 -14.85295 -14.51633 -14.14746 -14.07010 -13.93906 -13.69970 -13.56292 -13.08810 -13.03913 -12.75735 -12.59252 -12.45118 -12.31226 -12.07474 -12.00521 -11.81154 -11.16731 -11.08923 -11.02980 -10.84445 -10.65075 -10.40442 -10.38419 -10.24396 -10.23319 -10.06539 -9.88135 -9.43023 -9.23368 -9.20842 -8.93553 -8.91951 -8.58955 -8.36550 -6.00348 -4.01639 0.50568 0.78587 2.60689 3.15371 3.25162 3.29549 3.36344 3.37736 3.39811 4.03890 4.21792 4.31805 4.39041 4.43937 4.46214 4.51432 4.58560 4.69196 4.73245 4.81682 4.96813 5.11924 5.20279 5.35243 5.40343 5.47940 5.50369 5.56603 5.63882 5.64069 5.73291 5.74703 5.84678 5.96314 6.12439 6.16780 6.21091 6.28253 6.40941 6.46354 6.59065 6.62207 6.63786 6.78850 7.00188 7.06336 7.07116 7.14499 7.63517 7.64496 7.76584 7.98478 8.14796 8.40207 8.76187 9.03454 9.61516 11.11095 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.029037 B = 0.001630 C = 0.001585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.053474 B =17177.700922 C =17657.772799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.073 4.073 3 C -0.126 4.126 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.147 3.853 14 N -0.736 5.736 15 C 0.702 3.298 16 O -0.589 6.589 17 N -0.746 5.746 18 C 0.167 3.833 19 H 0.107 0.893 20 C -0.143 4.143 21 C 0.047 3.953 22 N -0.475 5.475 23 C 0.303 3.697 24 C -0.201 4.201 25 C -0.065 4.065 26 C -0.180 4.180 27 C 0.111 3.889 28 N -0.464 5.464 29 C 0.040 3.960 30 H 0.028 0.972 31 H 0.066 0.934 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.066 0.934 35 H 0.027 0.973 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.259 0.741 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.393 0.607 42 H 0.393 0.607 43 H 0.076 0.924 44 H 0.086 0.914 45 H 0.052 0.948 46 H 0.088 0.912 47 H 0.134 0.866 48 H 0.135 0.865 49 H 0.137 0.863 50 H 0.160 0.840 51 H 0.096 0.904 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.224 11.362 29.691 32.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.073 4.073 3 C -0.183 4.183 4 C -0.002 4.002 5 C -0.549 4.549 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.211 1.211 13 C 0.023 3.977 14 N -0.391 5.391 15 C 0.401 3.599 16 O -0.467 6.467 17 N -0.402 5.402 18 C 0.060 3.940 19 H 0.125 0.875 20 C -0.182 4.182 21 C -0.080 4.080 22 N -0.198 5.198 23 C 0.072 3.928 24 C -0.224 4.224 25 C -0.091 4.091 26 C -0.200 4.200 27 C -0.047 4.047 28 N -0.174 5.174 29 C -0.088 4.088 30 H 0.047 0.953 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.046 0.954 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.228 0.772 42 H 0.227 0.773 43 H 0.094 0.906 44 H 0.105 0.895 45 H 0.070 0.930 46 H 0.107 0.893 47 H 0.151 0.849 48 H 0.153 0.847 49 H 0.155 0.845 50 H 0.178 0.822 51 H 0.114 0.886 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.372 8.868 30.003 31.590 hybrid contribution -0.918 2.963 -1.411 3.408 sum -5.291 11.831 28.592 31.392 Atomic orbital electron populations 1.21751 0.95305 1.01164 1.00105 1.20914 0.95461 0.95849 0.95084 1.21749 1.00530 0.95927 1.00094 1.19095 0.96391 0.95264 0.89431 1.21219 1.31130 1.12050 0.90521 0.92224 1.25018 0.95329 0.95093 0.99092 1.69974 1.36965 1.23033 1.23330 0.86595 0.78587 0.79661 0.83472 1.19840 1.21154 1.21137 1.21494 0.98676 0.95664 0.81818 1.45376 1.56061 1.33145 1.04543 1.15975 0.80480 0.82906 0.80497 1.90928 1.42507 1.27362 1.85869 1.45052 1.57414 1.33182 1.04521 1.21508 0.92252 1.00439 0.79761 0.87488 1.22890 0.99207 1.02412 0.93719 1.22994 0.88956 0.99502 0.96560 1.61476 1.02615 1.49244 1.06417 1.19773 0.94252 0.87614 0.91122 1.22572 1.03030 0.95425 1.01369 1.21518 0.94543 1.00355 0.92710 1.22204 1.02287 0.96966 0.98520 1.22752 0.94058 0.90453 0.97411 1.67332 1.09658 1.39991 1.00413 1.23526 0.97046 1.00891 0.87287 0.95346 0.91505 0.93343 0.93376 0.91509 0.95362 0.96305 0.96284 0.93091 0.91990 0.91966 0.77207 0.77329 0.90560 0.89546 0.93000 0.89327 0.84860 0.84704 0.84521 0.82249 0.88607 0.92487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 8.05 37.16 0.30 -1.86 16 2 C -0.07 -1.35 0.54 -154.51 -0.08 -1.43 16 3 C -0.13 -2.15 8.05 37.15 0.30 -1.85 16 4 C 0.04 0.87 4.04 -27.88 -0.11 0.75 16 5 C -0.51 -13.44 7.65 -34.44 -0.26 -13.71 16 6 H 0.06 1.51 5.68 -52.49 -0.30 1.21 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.89 -26.28 13.29 55.43 0.74 -25.55 16 9 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 10 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 13 C 0.15 2.57 4.56 -4.04 -0.02 2.55 16 14 N -0.74 -10.31 4.96 -65.23 -0.32 -10.63 16 15 C 0.70 10.24 8.56 -86.91 -0.74 9.49 16 16 O -0.59 -11.21 16.07 5.30 0.09 -11.12 16 17 N -0.75 -7.50 5.15 -56.86 -0.29 -7.79 16 18 C 0.17 1.63 3.34 -66.07 -0.22 1.41 16 19 H 0.11 1.30 7.69 -51.93 -0.40 0.90 16 20 C -0.14 -1.28 6.67 -25.37 -0.17 -1.45 16 21 C 0.05 0.38 6.50 -2.76 -0.02 0.36 16 22 N -0.47 -4.47 5.36 -169.24 -0.91 -5.38 16 23 C 0.30 2.82 5.85 -155.02 -0.91 1.92 16 24 C -0.20 -1.40 7.89 -39.23 -0.31 -1.71 16 25 C -0.06 -0.36 10.17 -39.32 -0.40 -0.76 16 26 C -0.18 -0.95 10.10 -39.42 -0.40 -1.35 16 27 C 0.11 0.78 11.17 -17.57 -0.20 0.58 16 28 N -0.46 -4.74 10.39 -12.44 -0.13 -4.86 16 29 C 0.04 0.32 6.01 -1.90 -0.01 0.31 16 30 H 0.03 0.39 6.86 -51.93 -0.36 0.03 16 31 H 0.07 1.24 6.62 -51.93 -0.34 0.89 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.07 1.23 6.62 -51.93 -0.34 0.89 16 35 H 0.03 0.38 6.86 -51.93 -0.36 0.03 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.39 4.53 6.18 -40.82 -0.25 4.27 16 42 H 0.39 2.80 8.55 -40.82 -0.35 2.45 16 43 H 0.08 0.65 8.05 -51.93 -0.42 0.24 16 44 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.05 0.37 6.66 -51.93 -0.35 0.02 16 46 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.13 0.74 7.04 -52.48 -0.37 0.37 16 48 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 49 H 0.14 0.35 8.06 -52.49 -0.42 -0.07 16 50 H 0.16 0.68 8.06 -52.48 -0.42 0.26 16 51 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 52 H 0.06 0.37 6.50 -51.93 -0.34 0.03 16 LS Contribution 409.75 15.07 6.17 6.17 Total: -1.00 -33.53 409.75 -11.41 -44.94 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -8.38 Total: 3.48 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -3.35 Total: -5.29 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: -0.92 Total: -54.21 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.09 Total: -11.12 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.53 -11.41 -44.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376872044.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.922 kcal (2) G-P(sol) polarization free energy of solvation -33.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds