Wall clock time and date at job start Wed Apr 1 2020 03:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47309 * 2 1 4 4 C 1.52998 * 109.47149 * 119.99606 * 2 1 3 5 5 C 1.50706 * 109.47348 * 300.00078 * 4 2 1 6 6 H 1.08005 * 119.99758 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00102 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00217 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47057 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47389 * 300.00068 * 9 7 5 12 12 H 1.48504 * 109.47102 * 60.00417 * 9 7 5 13 13 C 1.52996 * 109.47350 * 239.99526 * 2 1 3 14 14 N 1.46506 * 109.46955 * 59.99944 * 13 2 1 15 15 C 1.34778 * 119.99945 * 179.97438 * 14 13 2 16 16 O 1.21585 * 120.00103 * 0.02562 * 15 14 13 17 17 N 1.34776 * 119.99898 * 180.02562 * 15 14 13 18 18 C 1.46497 * 120.00017 * 180.02562 * 17 15 14 19 19 H 1.08997 * 110.28734 * 34.29333 * 18 17 15 20 20 C 1.54263 * 110.32231 * 272.16994 * 18 17 15 21 21 C 1.54378 * 105.06037 * 241.10522 * 20 18 17 22 22 N 1.48553 * 104.59385 * 23.85158 * 21 20 18 23 23 C 1.39008 * 110.99779 * 200.96051 * 22 21 20 24 24 C 1.39135 * 119.70625 * 300.12549 * 23 22 21 25 25 C 1.38291 * 119.09923 * 179.97438 * 24 23 22 26 26 C 1.38891 * 118.50348 * 0.02562 * 25 24 23 27 27 C 1.38019 * 119.32731 * 359.97438 * 26 25 24 28 28 N 1.31967 * 120.85974 * 359.72275 * 27 26 25 29 29 C 1.48820 * 104.23731 * 320.49254 * 22 21 20 30 30 H 1.09002 * 109.47144 * 300.00262 * 1 2 3 31 31 H 1.08995 * 109.46867 * 60.00304 * 1 2 3 32 32 H 1.08994 * 109.47054 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47381 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.46541 * 300.00101 * 3 2 1 35 35 H 1.09001 * 109.47046 * 59.99028 * 3 2 1 36 36 H 1.09001 * 109.47671 * 180.02562 * 4 2 1 37 37 H 1.09006 * 109.47297 * 60.00006 * 4 2 1 38 38 H 0.97001 * 119.99646 * 359.97438 * 8 7 5 39 39 H 1.09000 * 109.47441 * 179.97438 * 13 2 1 40 40 H 1.09002 * 109.47087 * 300.00409 * 13 2 1 41 41 H 0.96998 * 119.99895 * 0.02562 * 14 13 2 42 42 H 0.96998 * 119.99942 * 0.02562 * 17 15 14 43 43 H 1.09004 * 110.32169 * 0.02562 * 20 18 17 44 44 H 1.09001 * 110.32612 * 122.20585 * 20 18 17 45 45 H 1.09004 * 110.41201 * 142.63559 * 21 20 18 46 46 H 1.08998 * 110.40622 * 264.95145 * 21 20 18 47 47 H 1.08006 * 120.45465 * 0.02741 * 24 23 22 48 48 H 1.08000 * 120.75159 * 180.02562 * 25 24 23 49 49 H 1.08004 * 120.33247 * 180.02562 * 26 25 24 50 50 H 1.08004 * 119.56523 * 179.97438 * 27 26 25 51 51 H 1.09002 * 110.45434 * 280.77101 * 29 22 21 52 52 H 1.08998 * 110.49371 * 158.24963 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5377 -0.0107 2.4798 6 1 0.9171 0.8677 2.3806 7 6 1.8703 -0.4820 3.7320 8 7 2.6264 -1.5512 3.8528 9 14 1.2482 0.3991 5.2571 10 1 1.7421 -0.3016 6.4697 11 1 1.7442 1.7989 5.2572 12 1 -0.2368 0.4002 5.2571 13 6 2.0401 -0.7213 -1.2491 14 7 1.5517 -0.0308 -2.4454 15 6 1.8778 -0.4910 -3.6695 16 8 2.5768 -1.4796 -3.7810 17 7 1.4289 0.1445 -4.7700 18 6 1.7829 -0.3560 -6.1005 19 1 1.8463 -1.4441 -6.0904 20 6 3.1216 0.2544 -6.5639 21 6 2.7807 1.0411 -7.8477 22 7 1.3323 1.3478 -7.7253 23 6 0.7753 1.6259 -8.9682 24 6 1.2642 2.6893 -9.7205 25 6 0.7011 2.9545 -10.9554 26 6 -0.3365 2.1445 -11.3984 27 6 -0.7719 1.1064 -10.5999 28 7 -0.2118 0.8729 -9.4281 29 6 0.7443 0.1109 -7.1428 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 3.1301 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 3.1300 -0.7208 1.2496 37 1 1.6767 -1.7489 1.2494 38 1 2.9498 -2.0085 3.0608 39 1 3.1301 -0.7209 -1.2494 40 1 1.6767 -1.7490 -1.2491 41 1 0.9943 0.7581 -2.3564 42 1 0.8716 0.9334 -4.6810 43 1 3.5156 0.9262 -5.8012 44 1 3.8416 -0.5341 -6.7830 45 1 3.3617 1.9622 -7.8947 46 1 2.9684 0.4289 -8.7297 47 1 2.0731 3.2990 -9.3455 48 1 1.0602 3.7729 -11.5618 49 1 -0.7975 2.3248 -12.3584 50 1 -1.5788 0.4744 -10.9405 51 1 0.6122 -0.6478 -7.9142 52 1 -0.2070 0.3319 -6.6589 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000376872045.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:59 Heat of formation + Delta-G solvation = 7.727115 kcal Electronic energy + Delta-G solvation = -29874.994567 eV Core-core repulsion = 25874.201522 eV Total energy + Delta-G solvation = -4000.793045 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.19971 -40.01026 -38.63136 -37.20796 -34.59035 -33.71713 -32.96570 -32.31189 -31.60994 -29.45674 -28.60763 -26.64328 -26.55288 -25.94786 -23.99097 -23.80785 -22.84635 -21.60638 -21.14707 -20.49499 -18.92653 -18.20391 -17.75377 -16.78413 -16.74171 -16.43056 -16.33380 -15.41761 -15.17776 -15.03902 -14.71198 -14.42601 -14.27899 -13.85539 -13.77651 -13.64692 -13.45137 -13.33952 -13.06487 -12.76085 -12.48919 -12.43698 -12.27719 -12.09473 -11.74163 -11.68745 -11.26298 -11.16631 -11.14834 -10.99369 -10.63323 -10.46112 -10.24032 -10.21198 -10.09031 -10.03765 -9.96365 -9.90131 -9.42685 -9.20415 -8.66351 -8.56474 -8.45240 -8.29516 -6.30831 -3.99788 0.67033 0.83750 2.82152 3.06878 3.36101 3.44062 3.45007 3.46565 3.65180 3.93805 4.11298 4.38557 4.41531 4.48936 4.57298 4.65274 4.67216 4.74852 4.79636 4.93177 5.11752 5.24390 5.26710 5.36094 5.41439 5.43372 5.44641 5.54797 5.59650 5.64435 5.68957 5.75077 5.82087 6.01608 6.07584 6.14079 6.16586 6.22834 6.36264 6.52265 6.55088 6.58859 6.68598 6.76988 6.98629 7.01999 7.04374 7.10387 7.37693 7.52672 7.54125 8.17785 8.24685 8.49775 8.77999 8.92501 9.71107 11.09094 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.027630 B = 0.001658 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.130835 B =16880.857910 C =17194.738867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.066 4.066 3 C -0.125 4.125 4 C 0.023 3.977 5 C -0.591 4.591 6 H 0.053 0.947 7 C 0.013 3.987 8 N -0.914 5.914 9 Si 1.066 2.934 10 H -0.284 1.284 11 H -0.289 1.289 12 H -0.289 1.289 13 C 0.147 3.853 14 N -0.737 5.737 15 C 0.701 3.299 16 O -0.595 6.595 17 N -0.741 5.741 18 C 0.160 3.840 19 H 0.100 0.900 20 C -0.136 4.136 21 C 0.043 3.957 22 N -0.457 5.457 23 C 0.303 3.697 24 C -0.181 4.181 25 C -0.056 4.056 26 C -0.201 4.201 27 C 0.124 3.876 28 N -0.518 5.518 29 C 0.040 3.960 30 H 0.067 0.933 31 H 0.030 0.970 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.030 0.970 35 H 0.067 0.933 36 H 0.009 0.991 37 H 0.009 0.991 38 H 0.269 0.731 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.394 0.606 42 H 0.397 0.603 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.090 0.910 46 H 0.056 0.944 47 H 0.136 0.864 48 H 0.135 0.865 49 H 0.134 0.866 50 H 0.156 0.844 51 H 0.083 0.917 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.441 9.373 -32.161 33.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.066 4.066 3 C -0.182 4.182 4 C -0.014 4.014 5 C -0.630 4.630 6 H 0.071 0.929 7 C -0.191 4.191 8 N -0.551 5.551 9 Si 0.895 3.105 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.216 1.216 13 C 0.023 3.977 14 N -0.392 5.392 15 C 0.401 3.599 16 O -0.474 6.474 17 N -0.397 5.397 18 C 0.053 3.947 19 H 0.118 0.882 20 C -0.176 4.176 21 C -0.083 4.083 22 N -0.175 5.175 23 C 0.071 3.929 24 C -0.204 4.204 25 C -0.082 4.082 26 C -0.222 4.222 27 C -0.034 4.034 28 N -0.232 5.232 29 C -0.087 4.087 30 H 0.086 0.914 31 H 0.049 0.951 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.049 0.951 35 H 0.086 0.914 36 H 0.027 0.973 37 H 0.027 0.973 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.229 0.771 42 H 0.231 0.769 43 H 0.102 0.898 44 H 0.101 0.899 45 H 0.109 0.891 46 H 0.074 0.926 47 H 0.154 0.846 48 H 0.153 0.847 49 H 0.152 0.848 50 H 0.173 0.827 51 H 0.101 0.899 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.121 8.162 -29.676 31.052 hybrid contribution -0.230 1.033 -2.636 2.841 sum -4.351 9.195 -32.312 33.876 Atomic orbital electron populations 1.21739 0.95099 1.01116 1.00301 1.20767 0.95596 0.95850 0.94423 1.21740 1.00405 0.95787 1.00299 1.19212 0.95674 0.95183 0.91381 1.21977 1.34848 1.14342 0.91790 0.92896 1.25783 0.95347 0.96583 1.01363 1.70772 1.32491 1.18273 1.33522 0.83580 0.75828 0.75282 0.75826 1.20907 1.21567 1.21570 1.21470 0.98535 0.95595 0.82058 1.45346 1.56149 1.33157 1.04523 1.16019 0.80427 0.82903 0.80597 1.90908 1.42814 1.27635 1.86010 1.45175 1.57195 1.33051 1.04268 1.21494 0.92731 0.99586 0.80882 0.88155 1.22862 0.98094 1.00051 0.96573 1.23231 0.86080 1.00565 0.98393 1.62619 1.04801 1.34062 1.16013 1.20049 0.92248 0.91674 0.88944 1.21597 1.03571 0.99439 0.95780 1.21483 0.94028 0.97812 0.94900 1.22035 0.99763 0.98309 1.02116 1.22567 0.96966 0.95013 0.88810 1.67622 1.11615 1.28405 1.15538 1.23371 0.98104 0.90490 0.96736 0.91385 0.95138 0.93486 0.93504 0.95146 0.91383 0.97285 0.97277 0.92063 0.92156 0.92140 0.77111 0.76897 0.89781 0.89888 0.89129 0.92604 0.84634 0.84682 0.84840 0.82668 0.89925 0.88754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 8.05 37.16 0.30 -1.95 16 2 C -0.07 -1.27 0.54 -154.51 -0.08 -1.35 16 3 C -0.13 -2.24 8.05 37.16 0.30 -1.94 16 4 C 0.02 0.57 3.35 -27.88 -0.09 0.47 16 5 C -0.59 -15.94 7.65 -34.44 -0.26 -16.21 16 6 H 0.05 1.38 5.68 -52.48 -0.30 1.09 16 7 C 0.01 0.37 5.46 -17.82 -0.10 0.27 16 8 N -0.91 -27.84 13.65 55.43 0.76 -27.09 16 9 Si 1.07 25.00 29.90 -169.99 -5.08 19.92 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 13 C 0.15 2.65 4.56 -4.04 -0.02 2.63 16 14 N -0.74 -10.88 4.96 -65.22 -0.32 -11.21 16 15 C 0.70 10.68 8.56 -86.92 -0.74 9.93 16 16 O -0.60 -11.49 16.02 5.29 0.08 -11.41 16 17 N -0.74 -8.25 4.99 -57.33 -0.29 -8.53 16 18 C 0.16 1.61 3.38 -66.55 -0.22 1.38 16 19 H 0.10 1.16 7.60 -51.93 -0.39 0.77 16 20 C -0.14 -1.21 6.79 -25.35 -0.17 -1.39 16 21 C 0.04 0.32 5.89 -2.19 -0.01 0.31 16 22 N -0.46 -3.96 5.42 -168.57 -0.91 -4.88 16 23 C 0.30 2.71 6.24 -155.02 -0.97 1.74 16 24 C -0.18 -1.30 9.40 -39.23 -0.37 -1.67 16 25 C -0.06 -0.32 10.17 -39.32 -0.40 -0.72 16 26 C -0.20 -1.13 10.10 -39.42 -0.40 -1.52 16 27 C 0.12 0.87 11.17 -17.57 -0.20 0.67 16 28 N -0.52 -4.84 8.48 -12.44 -0.11 -4.94 16 29 C 0.04 0.36 5.49 -2.04 -0.01 0.35 16 30 H 0.07 1.32 6.62 -51.93 -0.34 0.98 16 31 H 0.03 0.44 6.86 -51.93 -0.36 0.09 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.03 0.44 6.86 -51.93 -0.36 0.09 16 35 H 0.07 1.32 6.62 -51.93 -0.34 0.98 16 36 H 0.01 0.23 8.01 -51.93 -0.42 -0.18 16 37 H 0.01 0.24 8.01 -51.93 -0.42 -0.18 16 38 H 0.27 8.20 7.22 -40.82 -0.29 7.90 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.39 4.95 6.18 -40.82 -0.25 4.70 16 42 H 0.40 3.65 8.60 -40.82 -0.35 3.30 16 43 H 0.08 0.84 7.95 -51.93 -0.41 0.43 16 44 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.09 0.56 8.00 -51.93 -0.42 0.15 16 46 H 0.06 0.40 7.98 -51.93 -0.41 -0.02 16 47 H 0.14 0.79 7.87 -52.48 -0.41 0.37 16 48 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 49 H 0.13 0.42 8.06 -52.48 -0.42 -0.01 16 50 H 0.16 0.71 8.06 -52.48 -0.42 0.29 16 51 H 0.08 0.77 7.25 -51.93 -0.38 0.39 16 52 H 0.09 0.88 8.00 -51.93 -0.42 0.46 16 LS Contribution 409.76 15.07 6.18 6.18 Total: -1.00 -33.57 409.76 -11.59 -45.16 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -8.45 Total: 5.79 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: -3.45 Total: -8.99 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: -0.87 Total: -56.65 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.08 Total: -11.41 kcal Atomic # 14 Polarization: 25.00 SS G_CDS: -5.08 Total: 19.92 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.57 -11.59 -45.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376872045.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.890 kcal (2) G-P(sol) polarization free energy of solvation -33.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds