Wall clock time and date at job start Wed Apr 1 2020 03:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46875 * 2 1 4 4 C 1.52998 * 109.47387 * 239.99690 * 2 1 3 5 5 C 1.50700 * 109.46751 * 59.99604 * 4 2 1 6 6 H 1.07995 * 120.00496 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99804 * 180.02562 * 5 4 2 8 8 N 1.31519 * 120.00016 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00141 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46870 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.46946 * 119.99986 * 9 7 5 12 12 H 1.48500 * 109.46899 * 239.99789 * 9 7 5 13 13 C 1.53004 * 109.46715 * 119.99550 * 2 1 3 14 14 N 1.46489 * 109.47234 * 300.00036 * 13 2 1 15 15 C 1.34779 * 120.00184 * 180.02562 * 14 13 2 16 16 O 1.21586 * 119.99728 * 0.02562 * 15 14 13 17 17 N 1.34769 * 120.00344 * 179.97438 * 15 14 13 18 18 C 1.39978 * 120.00030 * 184.67589 * 17 15 14 19 19 C 1.38897 * 120.64936 * 145.05202 * 18 17 15 20 20 N 1.31442 * 120.49952 * 180.16217 * 19 18 17 21 21 C 1.32719 * 122.50901 * 359.97438 * 20 19 18 22 22 C 1.37674 * 120.21102 * 359.78086 * 21 20 19 23 23 C 1.39000 * 120.65494 * 325.06332 * 18 17 15 24 24 C 1.50509 * 122.84146 * 180.34404 * 22 21 20 25 25 C 1.52766 * 110.57571 * 342.62836 * 24 22 21 26 26 H 1.08995 * 109.68459 * 291.07724 * 25 24 22 27 27 N 1.46895 * 109.68956 * 170.50309 * 25 24 22 28 28 C 1.53326 * 108.35161 * 50.78861 * 25 24 22 29 29 C 1.50830 * 117.46129 * 179.66721 * 21 20 19 30 30 H 1.08996 * 109.47007 * 300.00153 * 1 2 3 31 31 H 1.09001 * 109.47206 * 60.00383 * 1 2 3 32 32 H 1.08996 * 109.46986 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46611 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.46891 * 299.99810 * 3 2 1 35 35 H 1.08991 * 109.47523 * 59.99623 * 3 2 1 36 36 H 1.08995 * 109.47312 * 179.97438 * 4 2 1 37 37 H 1.09005 * 109.47074 * 300.00524 * 4 2 1 38 38 H 0.96994 * 119.99910 * 180.02562 * 8 7 5 39 39 H 1.09007 * 109.46392 * 179.97438 * 13 2 1 40 40 H 1.08996 * 109.46815 * 60.00285 * 13 2 1 41 41 H 0.97005 * 120.00397 * 0.02562 * 14 13 2 42 42 H 0.96999 * 120.00115 * 4.68246 * 17 15 14 43 43 H 1.08003 * 119.75593 * 0.13637 * 19 18 17 44 44 H 1.08008 * 120.58246 * 359.95688 * 23 18 17 45 45 H 1.09004 * 109.25903 * 222.34535 * 24 22 21 46 46 H 1.09002 * 109.22886 * 102.88860 * 24 22 21 47 47 H 1.00900 * 110.99992 * 61.11024 * 27 25 24 48 48 H 1.00906 * 111.00077 * 185.05626 * 27 25 24 49 49 H 1.09001 * 109.67724 * 49.82079 * 28 25 24 50 50 H 1.08993 * 109.67945 * 170.31813 * 28 25 24 51 51 H 1.08999 * 109.29652 * 42.01913 * 29 21 20 52 52 H 1.09001 * 109.25502 * 282.55570 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5377 -0.0110 -2.4796 6 1 0.9171 0.8673 -2.3806 7 6 1.8704 -0.4824 -3.7319 8 7 2.6257 -1.5522 -3.8525 9 14 1.2482 0.3985 -5.2572 10 1 0.4236 1.5654 -4.8531 11 1 2.4035 0.8643 -6.0656 12 1 0.4226 -0.5345 -6.0654 13 6 2.0400 -0.7212 1.2494 14 7 1.5516 -0.0305 2.4454 15 6 1.8776 -0.4906 3.6696 16 8 2.5773 -1.4787 3.7812 17 7 1.4287 0.1450 4.7699 18 6 1.8461 -0.2731 6.0389 19 6 2.0427 0.6488 7.0591 20 7 2.4376 0.2532 8.2487 21 6 2.6657 -1.0220 8.5370 22 6 2.4868 -1.9921 7.5767 23 6 2.0721 -1.6190 6.3029 24 6 2.7207 -3.4552 7.8410 25 6 3.5597 -3.6454 9.1034 26 1 4.5755 -3.2924 8.9257 27 7 3.5862 -5.0675 9.4705 28 6 2.9205 -2.8317 10.2349 29 6 3.1230 -1.3476 9.9370 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 3.1301 -0.7209 -1.2494 37 1 1.6767 -1.7490 -1.2492 38 1 2.8601 -1.8836 -4.7335 39 1 3.1300 -0.7216 1.2491 40 1 1.6766 -1.7488 1.2493 41 1 0.9936 0.7580 2.3564 42 1 0.8164 0.8923 4.6825 43 1 1.8701 1.6987 6.8734 44 1 1.9281 -2.3618 5.5322 45 1 3.2442 -3.8948 6.9919 46 1 1.7604 -3.9549 7.9690 47 1 4.0037 -5.6222 8.7383 48 1 4.0662 -5.2058 10.3472 49 1 1.8546 -3.0529 10.2892 50 1 3.3963 -3.0840 11.1824 51 1 2.5488 -0.7561 10.6501 52 1 4.1803 -1.1020 10.0360 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000415953391.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:46 Heat of formation + Delta-G solvation = -18.111136 kcal Electronic energy + Delta-G solvation = -29948.186272 eV Core-core repulsion = 25946.272797 eV Total energy + Delta-G solvation = -4001.913476 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.22194 -39.97873 -37.83194 -37.18673 -35.08793 -33.85488 -32.98584 -32.75941 -32.06506 -29.32050 -28.38507 -27.14770 -26.57630 -26.19789 -24.43701 -23.20095 -22.89403 -22.53028 -21.00291 -19.94350 -18.99418 -18.14547 -17.20102 -16.69443 -16.60317 -16.33379 -15.88428 -15.58593 -15.48021 -14.92825 -14.61446 -14.46374 -14.23304 -14.14104 -13.87541 -13.63960 -13.22256 -13.14912 -12.98978 -12.81607 -12.76329 -12.40565 -12.22645 -12.11040 -11.86351 -11.43907 -11.24187 -11.07542 -10.97740 -10.88010 -10.75191 -10.68816 -10.46952 -10.33767 -10.28856 -9.94402 -9.65446 -9.35422 -9.25327 -9.10957 -8.96981 -8.91665 -8.40051 -8.26579 -6.03862 -4.05328 0.88027 1.14123 2.51722 3.08250 3.27414 3.35728 3.37752 3.60545 3.87910 4.06919 4.17831 4.41514 4.42949 4.44472 4.65002 4.69886 4.78751 4.97552 5.14841 5.19763 5.24228 5.31702 5.38699 5.39959 5.42845 5.55918 5.58393 5.63292 5.67481 5.72639 5.89469 5.92769 6.04869 6.09956 6.14140 6.17357 6.22993 6.32609 6.47209 6.57015 6.64820 6.67525 6.72960 6.80327 6.99711 7.01644 7.02295 7.06735 7.59459 7.71074 7.79604 7.89064 7.94699 8.35703 8.49498 8.99613 9.58064 11.07551 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023605 B = 0.001802 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.890057 B =15537.223414 C =16410.776737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.073 4.073 3 C -0.127 4.127 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.060 0.940 7 C 0.055 3.945 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.145 3.855 14 N -0.728 5.728 15 C 0.699 3.301 16 O -0.577 6.577 17 N -0.686 5.686 18 C 0.120 3.880 19 C 0.077 3.923 20 N -0.469 5.469 21 C 0.105 3.895 22 C -0.103 4.103 23 C -0.079 4.079 24 C -0.070 4.070 25 C 0.090 3.910 26 H 0.041 0.959 27 N -0.847 5.847 28 C -0.111 4.111 29 C -0.062 4.062 30 H 0.028 0.972 31 H 0.067 0.933 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.067 0.933 35 H 0.028 0.972 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.260 0.740 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.397 0.603 42 H 0.408 0.592 43 H 0.156 0.844 44 H 0.153 0.847 45 H 0.077 0.923 46 H 0.089 0.911 47 H 0.344 0.656 48 H 0.342 0.658 49 H 0.075 0.925 50 H 0.071 0.929 51 H 0.086 0.914 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.318 0.887 27.526 27.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.550 4.550 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.022 3.978 14 N -0.383 5.383 15 C 0.399 3.601 16 O -0.454 6.454 17 N -0.334 5.334 18 C 0.022 3.978 19 C -0.086 4.086 20 N -0.177 5.177 21 C -0.031 4.031 22 C -0.106 4.106 23 C -0.108 4.108 24 C -0.108 4.108 25 C -0.021 4.021 26 H 0.059 0.941 27 N -0.377 5.377 28 C -0.149 4.149 29 C -0.100 4.100 30 H 0.047 0.953 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.086 0.914 35 H 0.047 0.953 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.069 0.931 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.232 0.768 42 H 0.244 0.756 43 H 0.174 0.826 44 H 0.170 0.830 45 H 0.096 0.904 46 H 0.107 0.893 47 H 0.156 0.844 48 H 0.155 0.845 49 H 0.093 0.907 50 H 0.090 0.910 51 H 0.104 0.896 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.255 0.545 28.037 28.071 hybrid contribution 0.082 0.735 -2.027 2.158 sum -1.172 1.280 26.011 26.069 Atomic orbital electron populations 1.21762 0.95212 1.01211 1.00227 1.20933 0.95529 0.95919 0.94939 1.21762 1.00601 0.95834 1.00227 1.19093 0.96406 0.95251 0.89390 1.21208 1.31214 1.12073 0.90476 0.92185 1.25026 0.95315 0.95087 0.99139 1.69972 1.36949 1.22990 1.23385 0.86582 0.78603 0.79663 0.83408 1.19806 1.21124 1.21126 1.21581 0.98866 0.95730 0.81596 1.45402 1.55558 1.33043 1.04292 1.16007 0.80452 0.83090 0.80512 1.90917 1.42265 1.26728 1.85483 1.42541 1.50295 1.37391 1.03182 1.18509 1.00172 0.93721 0.85352 1.22447 0.98749 0.99110 0.88278 1.67458 1.11447 1.18300 1.20480 1.20925 0.98189 0.88026 0.96010 1.20290 1.00486 0.96610 0.93189 1.21793 0.97265 0.95398 0.96326 1.20394 1.01500 0.91325 0.97601 1.21312 0.97459 0.88378 0.95000 0.94099 1.58687 1.63512 1.07306 1.08199 1.21590 1.02253 0.93295 0.97804 1.20281 1.01902 0.96223 0.91604 0.95335 0.91359 0.93304 0.93311 0.91367 0.95316 0.96286 0.96273 0.93060 0.91733 0.91719 0.76830 0.75646 0.82639 0.82958 0.90420 0.89298 0.84364 0.84481 0.90672 0.91021 0.89589 0.90206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 8.05 37.16 0.30 -1.81 16 2 C -0.07 -1.32 0.54 -154.50 -0.08 -1.40 16 3 C -0.13 -2.13 8.05 37.16 0.30 -1.83 16 4 C 0.04 0.86 4.04 -27.88 -0.11 0.75 16 5 C -0.51 -13.29 7.65 -34.44 -0.26 -13.56 16 6 H 0.06 1.50 5.68 -52.49 -0.30 1.20 16 7 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 8 N -0.89 -26.05 13.29 55.43 0.74 -25.32 16 9 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 10 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 13 C 0.15 2.45 4.56 -4.05 -0.02 2.43 16 14 N -0.73 -9.80 4.96 -65.23 -0.32 -10.13 16 15 C 0.70 10.01 8.42 -86.92 -0.73 9.28 16 16 O -0.58 -10.44 13.83 5.29 0.07 -10.37 16 17 N -0.69 -7.37 5.36 -14.18 -0.08 -7.45 16 18 C 0.12 1.42 6.32 -83.61 -0.53 0.89 16 19 C 0.08 0.82 11.14 -17.47 -0.19 0.63 16 20 N -0.47 -5.47 10.17 -9.31 -0.09 -5.57 16 21 C 0.10 1.13 6.63 -82.35 -0.55 0.59 16 22 C -0.10 -1.14 5.74 -104.62 -0.60 -1.74 16 23 C -0.08 -1.01 8.40 -38.99 -0.33 -1.34 16 24 C -0.07 -0.65 5.27 -28.10 -0.15 -0.79 16 25 C 0.09 0.67 3.28 -67.67 -0.22 0.45 16 26 H 0.04 0.32 8.10 -51.93 -0.42 -0.10 16 27 N -0.85 -5.32 9.26 -4.63 -0.04 -5.36 16 28 C -0.11 -0.75 5.53 -26.71 -0.15 -0.90 16 29 C -0.06 -0.49 5.92 -27.96 -0.17 -0.66 16 30 H 0.03 0.38 6.86 -51.93 -0.36 0.02 16 31 H 0.07 1.24 6.62 -51.93 -0.34 0.89 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 1.24 6.62 -51.93 -0.34 0.90 16 35 H 0.03 0.38 6.86 -51.93 -0.36 0.02 16 36 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 39 H 0.06 1.18 8.14 -51.92 -0.42 0.75 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 41 H 0.40 4.32 6.18 -40.82 -0.25 4.07 16 42 H 0.41 2.93 8.84 -40.82 -0.36 2.56 16 43 H 0.16 1.22 8.06 -52.48 -0.42 0.79 16 44 H 0.15 2.18 6.31 -52.48 -0.33 1.84 16 45 H 0.08 0.74 8.13 -51.93 -0.42 0.32 16 46 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.34 1.90 9.05 -39.29 -0.36 1.55 16 48 H 0.34 1.58 8.99 -39.29 -0.35 1.23 16 49 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 50 H 0.07 0.37 8.13 -51.93 -0.42 -0.05 16 51 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 52 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 406.83 15.07 6.13 6.13 Total: -1.00 -32.11 406.83 -10.61 -42.72 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -8.40 Total: 7.04 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -3.59 Total: -7.60 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: 0.20 Total: -53.81 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.07 Total: -10.37 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.11 -10.61 -42.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415953391.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.606 kcal (2) G-P(sol) polarization free energy of solvation -32.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds