Wall clock time and date at job start Wed Apr 1 2020 03:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46875 * 2 1 4 4 C 1.52998 * 109.47387 * 239.99690 * 2 1 3 5 5 C 1.50700 * 109.46751 * 59.99604 * 4 2 1 6 6 H 1.07995 * 120.00496 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99804 * 180.02562 * 5 4 2 8 8 N 1.31519 * 120.00016 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00141 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46870 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.46946 * 119.99986 * 9 7 5 12 12 H 1.48500 * 109.46899 * 239.99789 * 9 7 5 13 13 C 1.53004 * 109.46715 * 119.99550 * 2 1 3 14 14 N 1.46489 * 109.47234 * 300.00036 * 13 2 1 15 15 C 1.34779 * 120.00184 * 180.02562 * 14 13 2 16 16 O 1.21586 * 119.99728 * 0.02562 * 15 14 13 17 17 N 1.34769 * 120.00344 * 179.97438 * 15 14 13 18 18 C 1.39978 * 120.00030 * 184.67589 * 17 15 14 19 19 C 1.38897 * 120.64936 * 145.05202 * 18 17 15 20 20 N 1.31442 * 120.49952 * 180.16217 * 19 18 17 21 21 C 1.32719 * 122.50901 * 359.97438 * 20 19 18 22 22 C 1.37674 * 120.21102 * 359.78086 * 21 20 19 23 23 C 1.39000 * 120.65494 * 325.06332 * 18 17 15 24 24 C 1.50509 * 122.84146 * 180.34404 * 22 21 20 25 25 C 1.52766 * 110.57571 * 342.62836 * 24 22 21 26 26 H 1.08995 * 109.68459 * 291.07724 * 25 24 22 27 27 N 1.46895 * 109.68956 * 170.50309 * 25 24 22 28 28 C 1.53326 * 108.35161 * 50.78861 * 25 24 22 29 29 C 1.50830 * 117.46129 * 179.66721 * 21 20 19 30 30 H 1.08996 * 109.47007 * 300.00153 * 1 2 3 31 31 H 1.09001 * 109.47206 * 60.00383 * 1 2 3 32 32 H 1.08996 * 109.46986 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46611 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.46891 * 299.99810 * 3 2 1 35 35 H 1.08991 * 109.47523 * 59.99623 * 3 2 1 36 36 H 1.08995 * 109.47312 * 179.97438 * 4 2 1 37 37 H 1.09005 * 109.47074 * 300.00524 * 4 2 1 38 38 H 0.96994 * 119.99910 * 180.02562 * 8 7 5 39 39 H 1.09007 * 109.46392 * 179.97438 * 13 2 1 40 40 H 1.08996 * 109.46815 * 60.00285 * 13 2 1 41 41 H 0.97005 * 120.00397 * 0.02562 * 14 13 2 42 42 H 0.96999 * 120.00115 * 4.68246 * 17 15 14 43 43 H 1.08003 * 119.75593 * 0.13637 * 19 18 17 44 44 H 1.08008 * 120.58246 * 359.95688 * 23 18 17 45 45 H 1.09004 * 109.25903 * 222.34535 * 24 22 21 46 46 H 1.09002 * 109.22886 * 102.88860 * 24 22 21 47 47 H 1.00900 * 110.99992 * 61.11024 * 27 25 24 48 48 H 1.00906 * 111.00077 * 185.05626 * 27 25 24 49 49 H 1.09001 * 109.67724 * 49.82079 * 28 25 24 50 50 H 1.08993 * 109.67945 * 170.31813 * 28 25 24 51 51 H 1.08999 * 109.29652 * 42.01913 * 29 21 20 52 52 H 1.09001 * 109.25502 * 282.55570 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5377 -0.0110 -2.4796 6 1 0.9171 0.8673 -2.3806 7 6 1.8704 -0.4824 -3.7319 8 7 2.6257 -1.5522 -3.8525 9 14 1.2482 0.3985 -5.2572 10 1 0.4236 1.5654 -4.8531 11 1 2.4035 0.8643 -6.0656 12 1 0.4226 -0.5345 -6.0654 13 6 2.0400 -0.7212 1.2494 14 7 1.5516 -0.0305 2.4454 15 6 1.8776 -0.4906 3.6696 16 8 2.5773 -1.4787 3.7812 17 7 1.4287 0.1450 4.7699 18 6 1.8461 -0.2731 6.0389 19 6 2.0427 0.6488 7.0591 20 7 2.4376 0.2532 8.2487 21 6 2.6657 -1.0220 8.5370 22 6 2.4868 -1.9921 7.5767 23 6 2.0721 -1.6190 6.3029 24 6 2.7207 -3.4552 7.8410 25 6 3.5597 -3.6454 9.1034 26 1 4.5755 -3.2924 8.9257 27 7 3.5862 -5.0675 9.4705 28 6 2.9205 -2.8317 10.2349 29 6 3.1230 -1.3476 9.9370 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 3.1301 -0.7209 -1.2494 37 1 1.6767 -1.7490 -1.2492 38 1 2.8601 -1.8836 -4.7335 39 1 3.1300 -0.7216 1.2491 40 1 1.6766 -1.7488 1.2493 41 1 0.9936 0.7580 2.3564 42 1 0.8164 0.8923 4.6825 43 1 1.8701 1.6987 6.8734 44 1 1.9281 -2.3618 5.5322 45 1 3.2442 -3.8948 6.9919 46 1 1.7604 -3.9549 7.9690 47 1 4.0037 -5.6222 8.7383 48 1 4.0662 -5.2058 10.3472 49 1 1.8546 -3.0529 10.2892 50 1 3.3963 -3.0840 11.1824 51 1 2.5488 -0.7561 10.6501 52 1 4.1803 -1.1020 10.0360 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000415953391.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:45 Heat of formation + Delta-G solvation = -40.613324 kcal Electronic energy + Delta-G solvation = -29949.162040 eV Core-core repulsion = 25946.272797 eV Total energy + Delta-G solvation = -4002.889244 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.15008 -41.02655 -39.00672 -38.19202 -36.09516 -35.35583 -34.14844 -33.69872 -33.30717 -30.23604 -29.09832 -29.02101 -27.95663 -27.53238 -25.41670 -24.72227 -23.69812 -23.51798 -22.12460 -20.71604 -20.19580 -19.42896 -18.41239 -18.18132 -17.55355 -17.36590 -16.74894 -16.65333 -16.44039 -16.23520 -15.84574 -15.65609 -15.32465 -15.21042 -14.80699 -14.70898 -14.47133 -14.37587 -14.09734 -13.93972 -13.86715 -13.69165 -13.48114 -13.07906 -12.90271 -12.70066 -12.61311 -12.49090 -12.34089 -12.23592 -12.10408 -11.95555 -11.72083 -11.59547 -11.54070 -11.48700 -11.01517 -10.86039 -10.52893 -10.52248 -10.28810 -10.11442 -9.63345 -9.15732 -8.14324 -6.21867 0.01972 0.23038 1.41603 1.42325 1.45721 1.54453 1.96361 2.43907 2.73973 3.05378 3.20411 3.31702 3.43445 3.73096 3.78467 3.87573 3.89048 3.95405 4.08089 4.08705 4.22126 4.30030 4.39816 4.47149 4.57864 4.67768 4.71949 4.72388 4.73562 4.76746 4.91294 4.94714 4.96843 5.02552 5.09392 5.13219 5.14228 5.23825 5.31192 5.35489 5.40686 5.46187 5.51302 5.54024 5.57133 5.76854 5.80608 5.84619 5.90479 6.22872 6.30680 6.61177 6.90747 6.94422 6.94725 7.39217 7.45943 8.98297 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023605 B = 0.001802 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.890057 B =15537.223414 C =16410.776737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.064 4.064 3 C -0.122 4.122 4 C 0.039 3.961 5 C -0.511 4.511 6 H 0.074 0.926 7 C -0.007 4.007 8 N -0.938 5.938 9 Si 0.959 3.041 10 H -0.256 1.256 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.161 3.839 14 N -0.714 5.714 15 C 0.699 3.301 16 O -0.618 6.618 17 N -0.664 5.664 18 C 0.106 3.894 19 C 0.084 3.916 20 N -0.482 5.482 21 C 0.100 3.900 22 C -0.110 4.110 23 C -0.099 4.099 24 C -0.068 4.068 25 C 0.094 3.906 26 H 0.038 0.962 27 N -0.850 5.850 28 C -0.104 4.104 29 C -0.060 4.060 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.037 0.963 33 H 0.036 0.964 34 H 0.055 0.945 35 H 0.071 0.929 36 H -0.014 1.014 37 H -0.013 1.013 38 H 0.259 0.741 39 H 0.045 0.955 40 H 0.047 0.953 41 H 0.413 0.587 42 H 0.428 0.572 43 H 0.188 0.812 44 H 0.130 0.870 45 H 0.067 0.933 46 H 0.086 0.914 47 H 0.347 0.653 48 H 0.354 0.646 49 H 0.068 0.932 50 H 0.093 0.907 51 H 0.095 0.905 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.563 3.303 29.623 29.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.065 4.065 3 C -0.179 4.179 4 C 0.002 3.998 5 C -0.550 4.550 6 H 0.092 0.908 7 C -0.204 4.204 8 N -0.580 5.580 9 Si 0.784 3.216 10 H -0.180 1.180 11 H -0.212 1.212 12 H -0.212 1.212 13 C 0.037 3.963 14 N -0.370 5.370 15 C 0.399 3.601 16 O -0.498 6.498 17 N -0.314 5.314 18 C 0.009 3.991 19 C -0.079 4.079 20 N -0.190 5.190 21 C -0.035 4.035 22 C -0.113 4.113 23 C -0.127 4.127 24 C -0.106 4.106 25 C -0.017 4.017 26 H 0.056 0.944 27 N -0.382 5.382 28 C -0.142 4.142 29 C -0.098 4.098 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.004 0.996 37 H 0.005 0.995 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.252 0.748 42 H 0.268 0.732 43 H 0.205 0.795 44 H 0.148 0.852 45 H 0.085 0.915 46 H 0.104 0.896 47 H 0.160 0.840 48 H 0.168 0.832 49 H 0.087 0.913 50 H 0.112 0.888 51 H 0.113 0.887 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.544 3.017 30.177 30.434 hybrid contribution 0.493 -0.065 -2.600 2.647 sum -2.051 2.952 27.577 27.811 Atomic orbital electron populations 1.21699 0.93448 1.01020 1.01733 1.20720 0.96805 0.96342 0.92597 1.21699 0.99905 0.94567 1.01738 1.18976 0.94314 0.94251 0.92297 1.21629 1.30288 1.12023 0.91015 0.90813 1.25964 0.95750 0.95907 1.02777 1.70128 1.38869 1.24970 1.24001 0.85487 0.78004 0.78827 0.79257 1.17954 1.21170 1.21163 1.21115 0.97640 0.95077 0.82513 1.44992 1.55650 1.33266 1.03067 1.16099 0.80078 0.82719 0.81188 1.90907 1.44129 1.28689 1.86114 1.42208 1.50007 1.37346 1.01885 1.18633 1.01048 0.93632 0.85836 1.22895 0.97316 1.00230 0.87434 1.67565 1.11978 1.18614 1.20880 1.21410 0.97251 0.87734 0.97154 1.20459 1.00389 0.97661 0.92797 1.21779 0.98523 0.95770 0.96633 1.20377 1.01599 0.90252 0.98341 1.21230 0.96886 0.89256 0.94373 0.94375 1.58659 1.63946 1.06577 1.08969 1.21553 1.01970 0.92343 0.98381 1.20365 1.02379 0.97076 0.89950 0.90998 0.92573 0.94427 0.94498 0.92570 0.90985 0.99560 0.99503 0.93220 0.93632 0.93478 0.74825 0.73236 0.79541 0.85242 0.91491 0.89602 0.83985 0.83189 0.91316 0.88822 0.88683 0.89353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.85 8.05 71.98 0.58 -3.27 16 2 C -0.06 -2.31 0.54 -52.18 -0.03 -2.34 16 3 C -0.12 -3.87 8.05 71.98 0.58 -3.29 16 4 C 0.04 1.95 4.04 29.85 0.12 2.07 16 5 C -0.51 -26.90 7.65 25.60 0.20 -26.71 16 6 H 0.07 3.62 5.68 -2.91 -0.02 3.60 16 7 C -0.01 -0.40 5.46 84.65 0.46 0.06 16 8 N -0.94 -56.66 13.29 21.45 0.28 -56.37 16 9 Si 0.96 43.16 29.54 68.60 2.03 45.18 16 10 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 11 H -0.29 -12.79 7.11 99.48 0.71 -12.09 16 12 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 13 C 0.16 5.49 4.56 86.38 0.39 5.88 16 14 N -0.71 -18.07 4.96 -478.55 -2.37 -20.45 16 15 C 0.70 19.48 8.42 179.06 1.51 20.98 16 16 O -0.62 -22.98 13.83 -3.99 -0.06 -23.03 16 17 N -0.66 -13.09 5.36 -317.03 -1.70 -14.79 16 18 C 0.11 2.39 6.32 38.18 0.24 2.63 16 19 C 0.08 1.61 11.14 84.91 0.95 2.56 16 20 N -0.48 -10.39 10.17 -183.36 -1.87 -12.25 16 21 C 0.10 2.06 6.63 42.33 0.28 2.34 16 22 C -0.11 -2.46 5.74 -19.86 -0.11 -2.57 16 23 C -0.10 -2.56 8.40 22.65 0.19 -2.37 16 24 C -0.07 -1.27 5.27 29.71 0.16 -1.11 16 25 C 0.09 1.32 3.28 44.95 0.15 1.46 16 26 H 0.04 0.56 8.10 -2.39 -0.02 0.54 16 27 N -0.85 -9.74 9.26 -168.56 -1.56 -11.30 16 28 C -0.10 -1.22 5.53 30.61 0.17 -1.05 16 29 C -0.06 -0.83 5.92 29.80 0.18 -0.66 16 30 H 0.07 1.64 6.86 -2.39 -0.02 1.63 16 31 H 0.06 1.93 6.62 -2.39 -0.02 1.91 16 32 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.04 1.24 8.14 -2.39 -0.02 1.23 16 34 H 0.06 1.93 6.62 -2.39 -0.02 1.91 16 35 H 0.07 1.65 6.86 -2.39 -0.02 1.64 16 36 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 37 H -0.01 -0.75 8.14 -2.38 -0.02 -0.77 16 38 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 39 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 40 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.41 7.53 6.18 -92.70 -0.57 6.96 16 42 H 0.43 4.76 8.84 -92.71 -0.82 3.94 16 43 H 0.19 2.26 8.06 -2.91 -0.02 2.24 16 44 H 0.13 3.95 6.31 -2.91 -0.02 3.93 16 45 H 0.07 1.37 8.13 -2.39 -0.02 1.35 16 46 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.35 3.63 9.05 -89.69 -0.81 2.82 16 48 H 0.35 2.67 8.99 -89.69 -0.81 1.86 16 49 H 0.07 0.92 8.10 -2.39 -0.02 0.90 16 50 H 0.09 0.71 8.13 -2.39 -0.02 0.70 16 51 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 52 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -73.04 406.83 -1.27 -74.31 By element: Atomic # 1 Polarization: 26.12 SS G_CDS: -2.04 Total: 24.08 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: 6.01 Total: -5.38 kcal Atomic # 7 Polarization: -107.95 SS G_CDS: -7.22 Total: -115.16 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -0.06 Total: -23.03 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Total: -73.04 -1.27 -74.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415953391.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.699 kcal (2) G-P(sol) polarization free energy of solvation -73.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds