Wall clock time and date at job start Wed Apr 1 2020 03:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46919 * 2 1 4 4 C 1.52998 * 109.46503 * 240.00225 * 2 1 3 5 5 C 1.50694 * 109.47573 * 60.00369 * 4 2 1 6 6 H 1.08003 * 120.00206 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99979 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00396 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99834 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47075 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47141 * 119.99863 * 9 7 5 12 12 H 1.48494 * 109.47117 * 239.99796 * 9 7 5 13 13 C 1.52997 * 109.47154 * 120.00093 * 2 1 3 14 14 N 1.46493 * 109.47200 * 300.00125 * 13 2 1 15 15 C 1.34778 * 120.00348 * 180.02562 * 14 13 2 16 16 O 1.21592 * 119.99830 * 359.97438 * 15 14 13 17 17 N 1.34773 * 120.00139 * 179.97438 * 15 14 13 18 18 C 1.39976 * 119.99868 * 185.30292 * 17 15 14 19 19 C 1.38895 * 120.65326 * 212.82042 * 18 17 15 20 20 N 1.31437 * 120.50465 * 180.15499 * 19 18 17 21 21 C 1.32723 * 122.50792 * 359.68605 * 20 19 18 22 22 C 1.37668 * 120.21362 * 0.22779 * 21 20 19 23 23 C 1.39009 * 120.65375 * 32.58071 * 18 17 15 24 24 C 1.50507 * 122.84691 * 179.54234 * 22 21 20 25 25 C 1.52765 * 110.56452 * 17.52688 * 24 22 21 26 26 H 1.08994 * 109.69135 * 68.90314 * 25 24 22 27 27 N 1.46900 * 109.68813 * 189.44217 * 25 24 22 28 28 C 1.53327 * 108.34739 * 309.15257 * 25 24 22 29 29 C 1.50748 * 117.48310 * 180.40162 * 21 20 19 30 30 H 1.08999 * 109.46858 * 299.99855 * 1 2 3 31 31 H 1.09005 * 109.46883 * 59.99713 * 1 2 3 32 32 H 1.08997 * 109.47019 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46763 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.47375 * 299.99495 * 3 2 1 35 35 H 1.08999 * 109.47237 * 60.00377 * 3 2 1 36 36 H 1.09011 * 109.46941 * 180.02562 * 4 2 1 37 37 H 1.08997 * 109.47456 * 299.99700 * 4 2 1 38 38 H 0.96996 * 120.00156 * 180.02562 * 8 7 5 39 39 H 1.08997 * 109.46939 * 179.97438 * 13 2 1 40 40 H 1.09005 * 109.46965 * 59.99826 * 13 2 1 41 41 H 0.97002 * 119.99987 * 359.97438 * 14 13 2 42 42 H 0.96994 * 120.00754 * 5.29871 * 17 15 14 43 43 H 1.07999 * 119.74864 * 359.89879 * 19 18 17 44 44 H 1.07995 * 120.58218 * 0.11833 * 23 18 17 45 45 H 1.09007 * 109.25665 * 137.79814 * 24 22 21 46 46 H 1.08997 * 109.25878 * 257.24291 * 24 22 21 47 47 H 1.00907 * 110.99578 * 299.99342 * 27 25 24 48 48 H 1.00895 * 111.00525 * 63.95129 * 27 25 24 49 49 H 1.08997 * 109.64325 * 189.57287 * 28 25 24 50 50 H 1.09004 * 109.64455 * 309.98914 * 28 25 24 51 51 H 1.08998 * 109.25700 * 77.44935 * 29 21 20 52 52 H 1.08998 * 109.22574 * 317.99590 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9165 0.8672 -2.3806 7 6 1.8711 -0.4816 -3.7320 8 7 2.6279 -1.5503 -3.8527 9 14 1.2479 0.3987 -5.2572 10 1 0.4226 1.5652 -4.8530 11 1 2.4026 0.8663 -6.0655 12 1 0.4236 -0.5351 -6.0656 13 6 2.0401 -0.7213 1.2492 14 7 1.5517 -0.0307 2.4453 15 6 1.8777 -0.4909 3.6695 16 8 2.5768 -1.4795 3.7810 17 7 1.4289 0.1447 4.7699 18 6 1.8565 -0.2651 6.0382 19 6 1.0113 -0.1680 7.1360 20 7 1.4169 -0.5509 8.3262 21 6 2.6290 -1.0471 8.5412 22 6 3.5203 -1.1743 7.4997 23 6 3.1337 -0.7817 6.2228 24 6 4.9117 -1.7195 7.6781 25 6 5.0248 -2.4807 8.9977 26 1 4.4379 -3.3976 8.9443 27 7 6.4323 -2.8086 9.2609 28 6 4.4847 -1.5854 10.1191 29 6 2.9722 -1.4591 9.9501 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.1300 -0.7217 -1.2491 37 1 1.6766 -1.7489 -1.2493 38 1 2.8628 -1.8813 -4.7337 39 1 3.1300 -0.7216 1.2489 40 1 1.6767 -1.7490 1.2492 41 1 0.9944 0.7582 2.3564 42 1 0.8096 0.8862 4.6831 43 1 0.0146 0.2289 7.0116 44 1 3.8154 -0.8726 5.3900 45 1 5.1421 -2.3939 6.8532 46 1 5.6240 -0.8944 7.6767 47 1 6.8134 -3.3835 8.5243 48 1 6.9813 -1.9715 9.3869 49 1 4.7091 -2.0344 11.0867 50 1 4.9471 -0.6003 10.0564 51 1 2.5048 -2.4194 10.1678 52 1 2.5941 -0.7096 10.6454 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000415953394.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:50 Heat of formation + Delta-G solvation = -19.788766 kcal Electronic energy + Delta-G solvation = -29975.238883 eV Core-core repulsion = 25973.252659 eV Total energy + Delta-G solvation = -4001.986223 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.26283 -40.01798 -37.89559 -37.23033 -35.13377 -33.87185 -32.95058 -32.80498 -32.08874 -29.35846 -28.24320 -27.16417 -26.59472 -26.22592 -24.48707 -23.21878 -22.93687 -22.55541 -21.03872 -20.14941 -19.03227 -18.16536 -17.19949 -16.83665 -16.65084 -16.34743 -15.87149 -15.47800 -15.37344 -14.99480 -14.56455 -14.49422 -14.17729 -14.06453 -13.85964 -13.63254 -13.57276 -13.23521 -13.12395 -12.84031 -12.79101 -12.39263 -12.18009 -12.12382 -11.79337 -11.38647 -11.24014 -11.15129 -11.08710 -10.89416 -10.81611 -10.70854 -10.48734 -10.38755 -10.30317 -9.96090 -9.69363 -9.41723 -9.27526 -9.14850 -8.98503 -8.93826 -8.41339 -8.27007 -6.05092 -4.06649 0.85117 1.09816 2.48832 3.04613 3.26429 3.34796 3.36742 3.58927 3.92565 4.07033 4.14423 4.40513 4.40974 4.46297 4.57736 4.62827 4.70518 4.94221 5.13662 5.14179 5.19915 5.30443 5.30584 5.38084 5.40102 5.52631 5.53838 5.65424 5.66247 5.67042 5.85686 5.91107 6.00407 6.07918 6.11917 6.14448 6.18568 6.30458 6.44389 6.55208 6.59738 6.64785 6.71951 6.77917 6.97851 6.99870 7.02023 7.04928 7.57961 7.69329 7.77168 7.85997 7.93324 8.34262 8.46359 8.98260 9.56825 11.06309 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022928 B = 0.001816 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.943426 B =15415.112604 C =16310.913493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.072 4.072 3 C -0.127 4.127 4 C 0.036 3.964 5 C -0.512 4.512 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.145 3.855 14 N -0.728 5.728 15 C 0.698 3.302 16 O -0.576 6.576 17 N -0.686 5.686 18 C 0.124 3.876 19 C 0.076 3.924 20 N -0.467 5.467 21 C 0.105 3.895 22 C -0.101 4.101 23 C -0.082 4.082 24 C -0.110 4.110 25 C 0.090 3.910 26 H 0.087 0.913 27 N -0.843 5.843 28 C -0.112 4.112 29 C -0.061 4.061 30 H 0.028 0.972 31 H 0.068 0.932 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.068 0.932 35 H 0.028 0.972 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.260 0.740 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.397 0.603 42 H 0.408 0.592 43 H 0.157 0.843 44 H 0.147 0.853 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.344 0.656 48 H 0.340 0.660 49 H 0.082 0.918 50 H 0.065 0.935 51 H 0.083 0.917 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.185 4.086 26.465 26.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.550 4.550 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.022 3.978 14 N -0.383 5.383 15 C 0.399 3.601 16 O -0.453 6.453 17 N -0.334 5.334 18 C 0.025 3.975 19 C -0.086 4.086 20 N -0.175 5.175 21 C -0.031 4.031 22 C -0.105 4.105 23 C -0.110 4.110 24 C -0.150 4.150 25 C -0.022 4.022 26 H 0.105 0.895 27 N -0.371 5.371 28 C -0.150 4.150 29 C -0.099 4.099 30 H 0.047 0.953 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.047 0.953 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.232 0.768 42 H 0.244 0.756 43 H 0.174 0.826 44 H 0.165 0.835 45 H 0.097 0.903 46 H 0.095 0.905 47 H 0.157 0.843 48 H 0.152 0.848 49 H 0.100 0.900 50 H 0.083 0.917 51 H 0.101 0.899 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.089 2.761 27.677 27.836 hybrid contribution -0.240 1.642 -3.006 3.434 sum 0.848 4.403 24.671 25.075 Atomic orbital electron populations 1.21766 0.95200 1.01238 1.00233 1.20931 0.95548 0.95900 0.94926 1.21762 1.00579 0.95843 1.00235 1.19093 0.96394 0.95259 0.89389 1.21203 1.31205 1.12116 0.90469 0.92184 1.25024 0.95304 0.95085 0.99143 1.69969 1.36873 1.23044 1.23398 0.86583 0.78612 0.79660 0.83400 1.19805 1.21125 1.21109 1.21585 0.98819 0.95786 0.81598 1.45413 1.55641 1.32914 1.04307 1.16016 0.80799 0.82800 0.80523 1.90939 1.42170 1.26641 1.85550 1.42585 1.50402 1.37109 1.03281 1.18514 0.93664 1.00111 0.85179 1.22431 0.98850 1.00190 0.87168 1.67467 1.16568 1.10096 1.23388 1.20935 0.89314 0.97133 0.95709 1.20212 0.97138 1.00371 0.92734 1.21679 0.94733 0.97319 0.97279 1.21332 0.93193 1.00319 1.00118 1.21496 0.90160 0.98070 0.92450 0.89504 1.58968 1.02766 1.23864 1.51478 1.21598 0.94447 0.99745 0.99235 1.20253 0.95825 1.02505 0.91365 0.95331 0.91344 0.93288 0.93322 0.91344 0.95335 0.96299 0.96281 0.93048 0.91736 0.91710 0.76818 0.75633 0.82603 0.83504 0.90252 0.90521 0.84342 0.84781 0.89974 0.91672 0.89874 0.89631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 8.05 37.16 0.30 -1.81 16 2 C -0.07 -1.31 0.54 -154.51 -0.08 -1.39 16 3 C -0.13 -2.10 8.05 37.16 0.30 -1.80 16 4 C 0.04 0.86 4.04 -27.89 -0.11 0.75 16 5 C -0.51 -13.26 7.65 -34.44 -0.26 -13.52 16 6 H 0.06 1.50 5.68 -52.48 -0.30 1.20 16 7 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 8 N -0.89 -25.98 13.29 55.43 0.74 -25.25 16 9 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 10 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 C 0.15 2.43 4.56 -4.05 -0.02 2.41 16 14 N -0.73 -9.72 4.96 -65.23 -0.32 -10.04 16 15 C 0.70 9.93 8.33 -86.92 -0.72 9.21 16 16 O -0.58 -10.43 14.04 5.28 0.07 -10.35 16 17 N -0.69 -7.29 5.37 -14.17 -0.08 -7.37 16 18 C 0.12 1.44 6.31 -83.61 -0.53 0.91 16 19 C 0.08 0.80 11.14 -17.48 -0.19 0.61 16 20 N -0.47 -5.37 10.17 -9.34 -0.10 -5.47 16 21 C 0.11 1.11 6.62 -82.39 -0.55 0.57 16 22 C -0.10 -1.09 5.74 -104.61 -0.60 -1.69 16 23 C -0.08 -1.02 8.36 -38.99 -0.33 -1.34 16 24 C -0.11 -0.91 5.26 -28.10 -0.15 -1.06 16 25 C 0.09 0.65 3.29 -67.66 -0.22 0.42 16 26 H 0.09 0.71 8.10 -51.93 -0.42 0.29 16 27 N -0.84 -5.22 9.28 -4.63 -0.04 -5.27 16 28 C -0.11 -0.74 5.52 -26.71 -0.15 -0.88 16 29 C -0.06 -0.48 5.91 -28.00 -0.17 -0.64 16 30 H 0.03 0.37 6.86 -51.93 -0.36 0.02 16 31 H 0.07 1.24 6.62 -51.93 -0.34 0.89 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 1.23 6.62 -51.93 -0.34 0.89 16 35 H 0.03 0.37 6.86 -51.93 -0.36 0.02 16 36 H 0.02 0.48 8.14 -51.92 -0.42 0.06 16 37 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.40 4.28 6.18 -40.82 -0.25 4.03 16 42 H 0.41 2.88 8.84 -40.82 -0.36 2.52 16 43 H 0.16 1.20 8.06 -52.49 -0.42 0.77 16 44 H 0.15 2.06 6.46 -52.49 -0.34 1.72 16 45 H 0.08 0.70 8.13 -51.92 -0.42 0.28 16 46 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.34 1.87 9.04 -39.29 -0.36 1.52 16 48 H 0.34 1.71 8.98 -39.29 -0.35 1.36 16 49 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 50 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 51 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 52 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 407.03 15.07 6.13 6.13 Total: -1.00 -32.04 407.03 -10.60 -42.64 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -8.41 Total: 6.98 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: -3.58 Total: -7.85 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: 0.20 Total: -53.39 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.07 Total: -10.35 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.04 -10.60 -42.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415953394.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.853 kcal (2) G-P(sol) polarization free energy of solvation -32.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds