Wall clock time and date at job start Wed Apr 1 2020 05:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47259 * 2 1 4 4 C 1.50709 * 109.46823 * 240.00666 * 2 1 3 5 5 H 1.08005 * 119.99733 * 239.99719 * 4 2 1 6 6 C 1.37871 * 119.99947 * 59.99753 * 4 2 1 7 7 N 1.31518 * 120.00479 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99985 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46959 * 59.99495 * 8 6 4 10 10 H 1.48499 * 109.47278 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47209 * 300.00190 * 8 6 4 12 12 C 1.52996 * 109.47529 * 120.00756 * 2 1 3 13 13 N 1.46503 * 109.46912 * 299.99700 * 12 2 1 14 14 C 1.34771 * 120.00253 * 179.97438 * 13 12 2 15 15 O 1.21590 * 119.99975 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00500 * 179.97438 * 14 13 12 17 17 C 1.46500 * 120.00242 * 180.02562 * 16 14 13 18 18 C 1.50705 * 109.46818 * 179.97438 * 17 16 14 19 19 C 1.38885 * 120.74325 * 90.00414 * 18 17 16 20 20 C 1.38026 * 119.32666 * 180.02562 * 19 18 17 21 21 N 1.31973 * 120.85644 * 359.97314 * 20 19 18 22 22 C 1.32397 * 121.62187 * 0.05169 * 21 20 19 23 23 N 1.39009 * 119.70445 * 179.97438 * 22 21 20 24 24 C 1.48533 * 110.99723 * 242.57786 * 23 22 21 25 25 C 1.54937 * 103.22413 * 159.72252 * 24 23 22 26 26 C 1.54604 * 102.92170 * 322.58313 * 25 24 23 27 27 C 1.47899 * 110.99899 * 359.97357 * 23 22 21 28 28 C 1.38297 * 120.74850 * 270.01871 * 18 17 16 29 29 H 1.09002 * 109.46893 * 299.99520 * 1 2 3 30 30 H 1.08996 * 109.47442 * 59.99603 * 1 2 3 31 31 H 1.09003 * 109.47131 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47108 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.47218 * 300.00534 * 3 2 1 34 34 H 1.09002 * 109.46777 * 60.00408 * 3 2 1 35 35 H 0.96994 * 120.00255 * 180.02562 * 7 6 4 36 36 H 1.09007 * 109.47274 * 180.02562 * 12 2 1 37 37 H 1.09003 * 109.47471 * 59.99526 * 12 2 1 38 38 H 0.96997 * 119.99634 * 359.97438 * 13 12 2 39 39 H 0.97006 * 120.00006 * 0.02562 * 16 14 13 40 40 H 1.08993 * 109.47103 * 60.00630 * 17 16 14 41 41 H 1.08999 * 109.46848 * 299.99743 * 17 16 14 42 42 H 1.07995 * 120.33696 * 359.73771 * 19 18 17 43 43 H 1.07996 * 119.57057 * 179.97438 * 20 19 18 44 44 H 1.08998 * 110.66362 * 278.15150 * 24 23 22 45 45 H 1.08996 * 110.66954 * 41.28371 * 24 23 22 46 46 H 1.08998 * 110.72224 * 204.22961 * 25 24 23 47 47 H 1.08990 * 110.72497 * 80.94160 * 25 24 23 48 48 H 1.08998 * 110.30795 * 263.04534 * 26 25 24 49 49 H 1.08996 * 110.30873 * 140.87373 * 26 25 24 50 50 H 1.09000 * 109.91718 * 333.50874 * 27 23 22 51 51 H 1.09007 * 109.91961 * 94.80138 * 27 23 22 52 52 H 1.07994 * 120.45152 * 0.02562 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1316 6 6 1.6991 -0.2392 -2.4828 7 7 0.9434 0.8304 -2.6034 8 14 2.3211 -1.1200 -4.0082 9 1 1.8256 -2.5199 -4.0079 10 1 1.8256 -0.4202 -5.2206 11 1 3.8061 -1.1206 -4.0085 12 6 2.0401 -0.7214 1.2491 13 7 1.5518 -0.0309 2.4454 14 6 1.8770 -0.4917 3.6694 15 8 2.5761 -1.4803 3.7809 16 7 1.4283 0.1438 4.7699 17 6 1.7823 -0.3568 6.1004 18 6 1.1597 0.5260 7.1513 19 6 -0.1088 0.2534 7.6468 20 6 -0.6512 1.0816 8.6086 21 7 0.0197 2.1244 9.0604 22 6 1.2308 2.4177 8.6129 23 7 1.9015 3.5263 9.1164 24 6 2.1593 4.5236 8.0464 25 6 2.3999 5.8354 8.8351 26 6 1.3887 5.7289 9.9997 27 6 1.0829 4.2254 10.1306 28 6 1.8384 1.6258 7.6436 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 0.7087 1.1617 -3.4843 36 1 3.1301 -0.7210 1.2493 37 1 1.6767 -1.7491 1.2491 38 1 0.9945 0.7580 2.3564 39 1 0.8709 0.9328 4.6811 40 1 2.8662 -0.3485 6.2152 41 1 1.4124 -1.3756 6.2155 42 1 -0.6670 -0.5952 7.2800 43 1 -1.6374 0.8736 8.9964 44 1 3.0452 4.2518 7.4725 45 1 1.2917 4.6207 7.3938 46 1 2.1826 6.7043 8.2139 47 1 3.4212 5.8761 9.2135 48 1 0.4791 6.2808 9.7626 49 1 1.8319 6.1065 10.9212 50 1 0.0246 4.0440 9.9430 51 1 1.3509 3.8774 11.1283 52 1 2.8262 1.8672 7.2799 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457601780.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:41:14 Heat of formation + Delta-G solvation = 14.924858 kcal Electronic energy + Delta-G solvation = -29889.942152 eV Core-core repulsion = 25889.461225 eV Total energy + Delta-G solvation = -4000.480927 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.14548 -39.64276 -38.66548 -36.58742 -35.22042 -33.32372 -33.07895 -32.40666 -30.74087 -29.41987 -29.30972 -27.05620 -25.72623 -25.46860 -24.52891 -23.78284 -22.88971 -21.37686 -20.67649 -20.64985 -18.78636 -18.39601 -17.43440 -17.08108 -16.32335 -16.01496 -15.90190 -15.75279 -15.18159 -14.97680 -14.71699 -14.65549 -14.12505 -13.98333 -13.68947 -13.42039 -13.32401 -12.99329 -12.87601 -12.78359 -12.54893 -12.34351 -12.17704 -12.00747 -11.75990 -11.59315 -11.37335 -11.19237 -10.98969 -10.84555 -10.72800 -10.38308 -10.34968 -10.21276 -10.11619 -9.75588 -9.72363 -9.63099 -9.30830 -9.06169 -8.79845 -8.50494 -8.41348 -8.21195 -6.01918 -4.11870 0.79731 0.82768 2.98332 3.26330 3.30384 3.34552 3.38756 3.54885 3.60362 3.98318 4.16742 4.32481 4.38924 4.40208 4.54506 4.71994 4.77114 4.82658 4.85373 4.89077 5.04435 5.24171 5.24780 5.32152 5.38856 5.40444 5.45257 5.49744 5.58234 5.59609 5.66850 5.78994 6.02381 6.16436 6.20004 6.21118 6.36355 6.49242 6.53191 6.79138 6.80636 6.82459 6.89818 7.02974 7.08181 7.27217 7.39768 7.55796 7.63602 7.69861 8.01116 8.12337 8.37692 8.44966 8.87594 9.00541 9.53792 10.99465 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016836 B = 0.001907 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.672691 B =14679.712518 C =15558.043448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.505 4.505 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.150 3.850 13 N -0.732 5.732 14 C 0.699 3.301 15 O -0.598 6.598 16 N -0.750 5.750 17 C 0.181 3.819 18 C -0.038 4.038 19 C -0.178 4.178 20 C 0.122 3.878 21 N -0.517 5.517 22 C 0.300 3.700 23 N -0.463 5.463 24 C 0.042 3.958 25 C -0.124 4.124 26 C -0.134 4.134 27 C 0.036 3.964 28 C -0.159 4.159 29 H 0.005 0.995 30 H 0.085 0.915 31 H 0.026 0.974 32 H 0.026 0.974 33 H 0.085 0.915 34 H 0.005 0.995 35 H 0.260 0.740 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.393 0.607 39 H 0.394 0.606 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.138 0.862 43 H 0.158 0.842 44 H 0.091 0.909 45 H 0.056 0.944 46 H 0.078 0.922 47 H 0.078 0.922 48 H 0.069 0.931 49 H 0.074 0.926 50 H 0.082 0.918 51 H 0.080 0.920 52 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.825 9.149 24.481 26.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 C -0.187 4.187 4 C -0.544 4.544 5 H 0.076 0.924 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.203 1.203 12 C 0.027 3.973 13 N -0.386 5.386 14 C 0.399 3.601 15 O -0.477 6.477 16 N -0.408 5.408 17 C 0.057 3.943 18 C -0.047 4.047 19 C -0.200 4.200 20 C -0.035 4.035 21 N -0.231 5.231 22 C 0.068 3.932 23 N -0.182 5.182 24 C -0.083 4.083 25 C -0.162 4.162 26 C -0.172 4.172 27 C -0.091 4.091 28 C -0.181 4.181 29 H 0.024 0.976 30 H 0.103 0.897 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.104 0.896 34 H 0.024 0.976 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.228 0.772 39 H 0.227 0.773 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.156 0.844 43 H 0.175 0.825 44 H 0.110 0.890 45 H 0.074 0.926 46 H 0.097 0.903 47 H 0.097 0.903 48 H 0.088 0.912 49 H 0.093 0.907 50 H 0.100 0.900 51 H 0.098 0.902 52 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.099 8.707 25.262 26.803 hybrid contribution -0.506 -0.125 -1.725 1.802 sum -2.605 8.582 23.537 25.188 Atomic orbital electron populations 1.21818 0.97786 0.99160 0.99970 1.18365 0.92791 0.92774 0.90560 1.21820 0.98588 0.98367 0.99970 1.20944 1.31473 1.12092 0.89844 0.92447 1.24882 0.94887 0.94941 0.98851 1.69793 1.36681 1.22739 1.23309 0.86626 0.79240 0.79790 0.82153 1.20285 1.21365 1.20273 1.21601 0.97904 0.95433 0.82331 1.45505 1.55563 1.32986 1.04534 1.16033 0.80532 0.82968 0.80608 1.90895 1.43069 1.27703 1.86034 1.45073 1.57886 1.33531 1.04267 1.19937 0.99757 0.95900 0.78698 1.20247 0.94100 0.94503 0.95870 1.22026 0.96074 1.02345 0.99524 1.22538 0.98931 0.89289 0.92767 1.67525 1.06815 1.19531 1.29204 1.19931 0.88077 0.94038 0.91142 1.61999 1.39439 1.05567 1.11144 1.23346 1.01798 0.90361 0.92824 1.22518 1.00357 0.96571 0.96776 1.22461 0.99492 0.95896 0.99336 1.22880 0.98398 0.92161 0.95692 1.21512 1.01805 0.95814 0.99012 0.97591 0.89661 0.95441 0.95438 0.89649 0.97600 0.92975 0.92911 0.92907 0.77193 0.77266 0.90456 0.90340 0.84410 0.82486 0.89016 0.92587 0.90346 0.90299 0.91182 0.90735 0.90005 0.90152 0.84384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 2 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 3 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 4 C -0.50 -13.16 8.01 -34.44 -0.28 -13.43 16 5 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.89 -23.49 9.35 55.43 0.52 -22.97 16 8 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 C 0.15 3.20 4.50 -4.04 -0.02 3.18 16 13 N -0.73 -12.95 4.96 -65.22 -0.32 -13.27 16 14 C 0.70 12.15 8.57 -86.93 -0.74 11.41 16 15 O -0.60 -12.78 16.34 5.29 0.09 -12.69 16 16 N -0.75 -9.49 5.55 -66.42 -0.37 -9.86 16 17 C 0.18 2.01 5.84 -5.19 -0.03 1.98 16 18 C -0.04 -0.37 5.28 -104.36 -0.55 -0.92 16 19 C -0.18 -1.52 9.81 -39.42 -0.39 -1.91 16 20 C 0.12 1.05 11.17 -17.57 -0.20 0.85 16 21 N -0.52 -5.33 8.15 -12.44 -0.10 -5.44 16 22 C 0.30 3.08 6.21 -155.02 -0.96 2.12 16 23 N -0.46 -4.31 5.30 -169.24 -0.90 -5.20 16 24 C 0.04 0.32 6.05 -1.90 -0.01 0.31 16 25 C -0.12 -0.74 7.06 -24.87 -0.18 -0.91 16 26 C -0.13 -0.81 6.93 -25.37 -0.18 -0.99 16 27 C 0.04 0.29 6.35 -2.76 -0.02 0.27 16 28 C -0.16 -1.55 9.16 -39.23 -0.36 -1.91 16 29 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 30 H 0.08 2.11 6.07 -51.93 -0.32 1.79 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 2.11 6.07 -51.93 -0.32 1.79 16 34 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 35 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 36 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.39 6.25 6.18 -40.82 -0.25 5.99 16 39 H 0.39 4.17 8.48 -40.82 -0.35 3.82 16 40 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 41 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 42 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 43 H 0.16 0.93 8.06 -52.49 -0.42 0.51 16 44 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.06 0.45 8.00 -51.93 -0.42 0.03 16 46 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 50 H 0.08 0.75 6.50 -51.93 -0.34 0.42 16 51 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 52 H 0.14 1.26 8.05 -52.49 -0.42 0.84 16 LS Contribution 410.13 15.07 6.18 6.18 Total: -1.00 -30.25 410.13 -11.97 -42.22 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -8.57 Total: 7.68 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -3.48 Total: -2.31 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: -1.17 Total: -56.74 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: 0.09 Total: -12.69 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -30.25 -11.97 -42.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457601780.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.149 kcal (2) G-P(sol) polarization free energy of solvation -30.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds