Wall clock time and date at job start Wed Apr 1 2020 05:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47280 * 2 1 4 4 C 1.50699 * 109.46832 * 239.99654 * 2 1 3 5 5 H 1.07998 * 120.00316 * 239.99821 * 4 2 1 6 6 C 1.37881 * 119.99959 * 60.00794 * 4 2 1 7 7 N 1.31517 * 119.99606 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 119.99960 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47362 * 59.99554 * 8 6 4 10 10 H 1.48495 * 109.47193 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47444 * 299.99529 * 8 6 4 12 12 C 1.53001 * 109.46767 * 120.00182 * 2 1 3 13 13 N 1.46500 * 109.47254 * 299.99305 * 12 2 1 14 14 C 1.34779 * 120.00048 * 180.02562 * 13 12 2 15 15 O 1.21583 * 119.99751 * 354.92132 * 14 13 12 16 16 N 1.34773 * 119.99573 * 174.92473 * 14 13 12 17 17 C 1.47083 * 120.87916 * 184.71798 * 16 14 13 18 18 C 1.53690 * 108.28136 * 128.75306 * 17 16 14 19 19 N 1.46900 * 109.25535 * 54.08296 * 18 17 16 20 20 C 1.46900 * 111.00081 * 172.61189 * 19 18 17 21 21 C 1.50702 * 109.47084 * 314.30085 * 20 19 18 22 22 C 1.38669 * 120.41989 * 89.99634 * 21 20 19 23 23 C 1.38622 * 118.42309 * 180.02562 * 22 21 20 24 24 C 1.38230 * 119.16054 * 0.02562 * 23 22 21 25 25 N 1.31853 * 120.76304 * 0.02562 * 24 23 22 26 26 C 1.31889 * 121.72703 * 359.69346 * 25 24 23 27 27 C 1.46903 * 111.26715 * 296.75832 * 19 18 17 28 28 C 1.47074 * 120.88543 * 4.99424 * 16 14 13 29 29 H 1.09007 * 109.47034 * 299.99923 * 1 2 3 30 30 H 1.08994 * 109.47072 * 59.99898 * 1 2 3 31 31 H 1.08996 * 109.47370 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47450 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.47152 * 300.00053 * 3 2 1 34 34 H 1.09003 * 109.47460 * 60.00241 * 3 2 1 35 35 H 0.97005 * 119.99284 * 180.02562 * 7 6 4 36 36 H 1.09002 * 109.47604 * 60.00118 * 12 2 1 37 37 H 1.09006 * 109.46923 * 180.02562 * 12 2 1 38 38 H 0.96999 * 120.00154 * 0.02562 * 13 12 2 39 39 H 1.09003 * 109.62803 * 248.52241 * 17 16 14 40 40 H 1.09007 * 109.62840 * 9.10011 * 17 16 14 41 41 H 1.09003 * 109.64947 * 294.08195 * 18 17 16 42 42 H 1.08994 * 109.42550 * 173.94909 * 18 17 16 43 43 H 1.09004 * 109.47201 * 74.29821 * 20 19 18 44 44 H 1.09001 * 109.47043 * 194.29808 * 20 19 18 45 45 H 1.08001 * 120.78913 * 359.97438 * 22 21 20 46 46 H 1.08004 * 120.42345 * 180.02562 * 23 22 21 47 47 H 1.08002 * 119.62063 * 179.97438 * 24 23 22 48 48 H 1.07992 * 119.61889 * 180.31536 * 26 25 24 49 49 H 1.08997 * 109.49283 * 303.14331 * 27 19 18 50 50 H 1.09000 * 109.51491 * 183.07808 * 27 19 18 51 51 H 1.09001 * 109.62985 * 350.89625 * 28 16 14 52 52 H 1.08998 * 109.62963 * 111.28680 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6033 8 14 2.3224 -1.1196 -4.0079 9 1 1.8279 -2.5199 -4.0081 10 1 1.8269 -0.4200 -5.2204 11 1 3.8074 -1.1192 -4.0078 12 6 2.0399 -0.7213 1.2493 13 7 1.5517 -0.0306 2.4454 14 6 1.8777 -0.4909 3.6696 15 8 2.4987 -1.5300 3.7828 16 7 1.5152 0.2008 4.7680 17 6 1.9480 -0.2276 6.1068 18 6 2.5771 0.9801 6.8195 19 7 1.6275 2.1008 6.8034 20 6 2.1162 3.2168 7.6241 21 6 2.6240 2.6876 8.9406 22 6 3.9512 2.3110 9.0810 23 6 4.3738 1.8292 10.3102 24 6 3.4645 1.7403 11.3476 25 7 2.2094 2.1067 11.1775 26 6 1.7737 2.5745 10.0239 27 6 1.3458 2.5408 5.4305 28 6 0.6713 1.4006 4.6603 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1301 1.4424 0.0005 33 1 1.6767 1.9562 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 0.7083 1.1609 -3.4844 36 1 1.6766 -1.7490 1.2493 37 1 3.1300 -0.7209 1.2495 38 1 0.9938 0.7579 2.3565 39 1 1.0875 -0.5835 6.6734 40 1 2.6853 -1.0253 6.0155 41 1 3.4932 1.2723 6.3061 42 1 2.8071 0.7130 7.8509 43 1 2.9257 3.7256 7.1005 44 1 1.3022 3.9190 7.8044 45 1 4.6391 2.3904 8.2522 46 1 5.4005 1.5271 10.4556 47 1 3.7857 1.3656 12.3082 48 1 0.7396 2.8695 9.9239 49 1 2.2790 2.8112 4.9365 50 1 0.6828 3.4058 5.4541 51 1 0.5639 1.6799 3.6122 52 1 -0.3107 1.1971 5.0875 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459238243.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:45 Heat of formation + Delta-G solvation = 25.736506 kcal Electronic energy + Delta-G solvation = -30805.068114 eV Core-core repulsion = 26805.056015 eV Total energy + Delta-G solvation = -4000.012099 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.84006 -40.06488 -38.26904 -36.42561 -35.04157 -33.36509 -32.78230 -31.92723 -31.38041 -30.51068 -28.20277 -25.74063 -25.72960 -25.26686 -24.64469 -24.02499 -23.55801 -22.20705 -21.16507 -19.35127 -18.89189 -18.02769 -17.43152 -16.74528 -16.21054 -15.89579 -15.72405 -15.62730 -15.34381 -15.03042 -14.72680 -14.64435 -14.08289 -13.97164 -13.77406 -13.64889 -13.46317 -13.37764 -12.89325 -12.76872 -12.53540 -12.29191 -12.14916 -11.96613 -11.53111 -11.38339 -11.38166 -11.28527 -11.17348 -10.85130 -10.72862 -10.38965 -10.20478 -10.15731 -9.81978 -9.73534 -9.63722 -9.43500 -9.30435 -8.87139 -8.80480 -8.56114 -8.39451 -8.11612 -6.02384 -4.12112 0.69037 0.87899 2.88746 3.30030 3.31082 3.34185 3.38264 3.57574 3.74075 4.04624 4.25440 4.31175 4.40547 4.41911 4.57028 4.58747 4.69777 4.82144 4.89221 4.99757 5.06108 5.12512 5.21422 5.24353 5.31767 5.38341 5.40965 5.47795 5.66005 5.71036 5.71699 5.83850 5.91506 6.18438 6.29716 6.36374 6.48881 6.53551 6.58993 6.68623 6.79449 6.81027 6.91577 7.02427 7.09315 7.26585 7.38526 7.55119 7.60636 7.69382 8.00429 8.11695 8.36710 8.42187 8.87275 9.01746 9.53425 10.99041 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.027855 B = 0.001973 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.955858 B =14189.610767 C =14468.065874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.056 3.944 3 C -0.128 4.128 4 C -0.505 4.505 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.149 3.851 13 N -0.733 5.733 14 C 0.702 3.298 15 O -0.598 6.598 16 N -0.638 5.638 17 C 0.138 3.862 18 C 0.037 3.963 19 N -0.530 5.530 20 C 0.097 3.903 21 C -0.135 4.135 22 C -0.070 4.070 23 C -0.173 4.173 24 C 0.097 3.903 25 N -0.486 5.486 26 C 0.119 3.881 27 C 0.042 3.958 28 C 0.118 3.882 29 H 0.004 0.996 30 H 0.085 0.915 31 H 0.027 0.973 32 H 0.026 0.974 33 H 0.085 0.915 34 H 0.003 0.997 35 H 0.260 0.740 36 H 0.053 0.947 37 H 0.050 0.950 38 H 0.393 0.607 39 H 0.068 0.932 40 H 0.095 0.905 41 H 0.039 0.961 42 H 0.086 0.914 43 H 0.046 0.954 44 H 0.090 0.910 45 H 0.131 0.869 46 H 0.135 0.865 47 H 0.155 0.845 48 H 0.157 0.843 49 H 0.043 0.957 50 H 0.089 0.911 51 H 0.084 0.916 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.870 8.163 23.734 25.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 C -0.186 4.186 4 C -0.543 4.543 5 H 0.075 0.925 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.203 1.203 12 C 0.026 3.974 13 N -0.389 5.389 14 C 0.403 3.597 15 O -0.477 6.477 16 N -0.377 5.377 17 C 0.014 3.986 18 C -0.091 4.091 19 N -0.255 5.255 20 C -0.030 4.030 21 C -0.137 4.137 22 C -0.096 4.096 23 C -0.193 4.193 24 C -0.060 4.060 25 N -0.194 5.194 26 C -0.038 4.038 27 C -0.087 4.087 28 C -0.007 4.007 29 H 0.023 0.977 30 H 0.104 0.896 31 H 0.046 0.954 32 H 0.045 0.955 33 H 0.104 0.896 34 H 0.022 0.978 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.230 0.770 39 H 0.086 0.914 40 H 0.113 0.887 41 H 0.057 0.943 42 H 0.104 0.896 43 H 0.065 0.935 44 H 0.109 0.891 45 H 0.149 0.851 46 H 0.153 0.847 47 H 0.172 0.828 48 H 0.174 0.826 49 H 0.061 0.939 50 H 0.107 0.893 51 H 0.102 0.898 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.238 7.270 24.497 25.583 hybrid contribution 1.471 0.340 -1.955 2.470 sum 2.709 7.611 22.542 23.945 Atomic orbital electron populations 1.21814 0.97747 0.99218 0.99908 1.18359 0.92820 0.92726 0.90566 1.21813 0.98524 0.98400 0.99886 1.20938 1.31478 1.12080 0.89836 0.92469 1.24882 0.94887 0.94948 0.98841 1.69795 1.36641 1.22760 1.23301 0.86623 0.79210 0.79812 0.82147 1.20274 1.21354 1.20310 1.21596 0.97702 0.95613 0.82464 1.45668 1.55614 1.33077 1.04589 1.15978 0.79897 0.83156 0.80638 1.90868 1.47221 1.23918 1.85674 1.47316 1.55363 1.29245 1.05786 1.21534 0.99935 0.95881 0.81214 1.22747 0.93601 0.91808 1.00993 1.62097 1.44725 1.07427 1.11249 1.21019 0.99341 0.92909 0.89765 1.20772 0.94493 1.01379 0.97034 1.21581 0.95353 0.95073 0.97616 1.22150 1.01566 1.01519 0.94037 1.22808 0.88763 0.95387 0.99020 1.67740 1.16633 1.10254 1.24788 1.22693 0.99806 0.93963 0.87376 1.22511 1.00402 0.97933 0.87825 1.21657 0.94256 0.84436 1.00305 0.97689 0.89617 0.95395 0.95506 0.89600 0.97762 0.92973 0.92860 0.93115 0.77024 0.91375 0.88702 0.94296 0.89592 0.93537 0.89130 0.85071 0.84697 0.82793 0.82570 0.93914 0.89268 0.89760 0.90633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 2 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 3 C -0.13 -2.86 8.08 37.15 0.30 -2.56 16 4 C -0.50 -13.19 8.01 -34.44 -0.28 -13.46 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.89 -23.42 9.35 55.43 0.52 -22.91 16 8 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 C 0.15 3.23 4.51 -4.04 -0.02 3.21 16 13 N -0.73 -13.44 4.87 -65.22 -0.32 -13.76 16 14 C 0.70 12.90 8.31 -86.92 -0.72 12.18 16 15 O -0.60 -13.22 15.83 5.29 0.08 -13.14 16 16 N -0.64 -8.96 3.00 -177.91 -0.53 -9.49 16 17 C 0.14 1.70 6.61 -3.37 -0.02 1.68 16 18 C 0.04 0.37 4.81 -3.47 -0.02 0.35 16 19 N -0.53 -4.64 4.77 -235.47 -1.12 -5.76 16 20 C 0.10 0.68 5.45 -4.97 -0.03 0.65 16 21 C -0.13 -1.01 4.13 -104.48 -0.43 -1.44 16 22 C -0.07 -0.49 7.95 -39.28 -0.31 -0.80 16 23 C -0.17 -1.13 10.11 -39.44 -0.40 -1.53 16 24 C 0.10 0.73 11.18 -17.55 -0.20 0.53 16 25 N -0.49 -4.58 10.36 -13.25 -0.14 -4.72 16 26 C 0.12 0.98 10.86 -17.55 -0.19 0.79 16 27 C 0.04 0.37 5.58 -3.70 -0.02 0.35 16 28 C 0.12 1.27 6.59 -3.60 -0.02 1.25 16 29 H 0.00 0.08 6.86 -51.92 -0.36 -0.27 16 30 H 0.09 2.12 6.07 -51.93 -0.32 1.80 16 31 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.09 2.11 6.07 -51.93 -0.32 1.80 16 34 H 0.00 0.07 6.86 -51.93 -0.36 -0.29 16 35 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 36 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.39 6.47 3.66 -40.82 -0.15 6.32 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.09 1.32 7.09 -51.92 -0.37 0.95 16 41 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.09 0.81 5.54 -51.93 -0.29 0.52 16 43 H 0.05 0.32 8.03 -51.93 -0.42 -0.10 16 44 H 0.09 0.52 8.09 -51.93 -0.42 0.10 16 45 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 46 H 0.14 0.58 8.06 -52.48 -0.42 0.16 16 47 H 0.15 0.77 8.06 -52.49 -0.42 0.35 16 48 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 49 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.09 0.61 8.11 -51.93 -0.42 0.19 16 51 H 0.08 0.92 5.63 -51.93 -0.29 0.62 16 52 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 400.39 15.07 6.03 6.03 Total: -1.00 -30.65 400.39 -11.04 -41.69 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -8.31 Total: 4.95 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -2.23 Total: 1.44 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: -1.59 Total: -56.64 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: 0.08 Total: -13.14 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -30.65 -11.04 -41.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459238243.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.423 kcal (2) G-P(sol) polarization free energy of solvation -30.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds