Wall clock time and date at job start Wed Apr 1 2020 05:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47280 * 2 1 4 4 C 1.50699 * 109.46832 * 239.99654 * 2 1 3 5 5 H 1.07998 * 120.00316 * 239.99821 * 4 2 1 6 6 C 1.37881 * 119.99959 * 60.00794 * 4 2 1 7 7 N 1.31517 * 119.99606 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 119.99960 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47362 * 59.99554 * 8 6 4 10 10 H 1.48495 * 109.47193 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47444 * 299.99529 * 8 6 4 12 12 C 1.53001 * 109.46767 * 120.00182 * 2 1 3 13 13 N 1.46500 * 109.47254 * 299.99305 * 12 2 1 14 14 C 1.34779 * 120.00048 * 180.02562 * 13 12 2 15 15 O 1.21583 * 119.99751 * 354.92132 * 14 13 12 16 16 N 1.34773 * 119.99573 * 174.92473 * 14 13 12 17 17 C 1.47083 * 120.87916 * 184.71798 * 16 14 13 18 18 C 1.53690 * 108.28136 * 128.75306 * 17 16 14 19 19 N 1.46900 * 109.25535 * 54.08296 * 18 17 16 20 20 C 1.46900 * 111.00081 * 172.61189 * 19 18 17 21 21 C 1.50702 * 109.47084 * 314.30085 * 20 19 18 22 22 C 1.38669 * 120.41989 * 89.99634 * 21 20 19 23 23 C 1.38622 * 118.42309 * 180.02562 * 22 21 20 24 24 C 1.38230 * 119.16054 * 0.02562 * 23 22 21 25 25 N 1.31853 * 120.76304 * 0.02562 * 24 23 22 26 26 C 1.31889 * 121.72703 * 359.69346 * 25 24 23 27 27 C 1.46903 * 111.26715 * 296.75832 * 19 18 17 28 28 C 1.47074 * 120.88543 * 4.99424 * 16 14 13 29 29 H 1.09007 * 109.47034 * 299.99923 * 1 2 3 30 30 H 1.08994 * 109.47072 * 59.99898 * 1 2 3 31 31 H 1.08996 * 109.47370 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47450 * 179.97438 * 3 2 1 33 33 H 1.08994 * 109.47152 * 300.00053 * 3 2 1 34 34 H 1.09003 * 109.47460 * 60.00241 * 3 2 1 35 35 H 0.97005 * 119.99284 * 180.02562 * 7 6 4 36 36 H 1.09002 * 109.47604 * 60.00118 * 12 2 1 37 37 H 1.09006 * 109.46923 * 180.02562 * 12 2 1 38 38 H 0.96999 * 120.00154 * 0.02562 * 13 12 2 39 39 H 1.09003 * 109.62803 * 248.52241 * 17 16 14 40 40 H 1.09007 * 109.62840 * 9.10011 * 17 16 14 41 41 H 1.09003 * 109.64947 * 294.08195 * 18 17 16 42 42 H 1.08994 * 109.42550 * 173.94909 * 18 17 16 43 43 H 1.09004 * 109.47201 * 74.29821 * 20 19 18 44 44 H 1.09001 * 109.47043 * 194.29808 * 20 19 18 45 45 H 1.08001 * 120.78913 * 359.97438 * 22 21 20 46 46 H 1.08004 * 120.42345 * 180.02562 * 23 22 21 47 47 H 1.08002 * 119.62063 * 179.97438 * 24 23 22 48 48 H 1.07992 * 119.61889 * 180.31536 * 26 25 24 49 49 H 1.08997 * 109.49283 * 303.14331 * 27 19 18 50 50 H 1.09000 * 109.51491 * 183.07808 * 27 19 18 51 51 H 1.09001 * 109.62985 * 350.89625 * 28 16 14 52 52 H 1.08998 * 109.62963 * 111.28680 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6033 8 14 2.3224 -1.1196 -4.0079 9 1 1.8279 -2.5199 -4.0081 10 1 1.8269 -0.4200 -5.2204 11 1 3.8074 -1.1192 -4.0078 12 6 2.0399 -0.7213 1.2493 13 7 1.5517 -0.0306 2.4454 14 6 1.8777 -0.4909 3.6696 15 8 2.4987 -1.5300 3.7828 16 7 1.5152 0.2008 4.7680 17 6 1.9480 -0.2276 6.1068 18 6 2.5771 0.9801 6.8195 19 7 1.6275 2.1008 6.8034 20 6 2.1162 3.2168 7.6241 21 6 2.6240 2.6876 8.9406 22 6 3.9512 2.3110 9.0810 23 6 4.3738 1.8292 10.3102 24 6 3.4645 1.7403 11.3476 25 7 2.2094 2.1067 11.1775 26 6 1.7737 2.5745 10.0239 27 6 1.3458 2.5408 5.4305 28 6 0.6713 1.4006 4.6603 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1301 1.4424 0.0005 33 1 1.6767 1.9562 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 0.7083 1.1609 -3.4844 36 1 1.6766 -1.7490 1.2493 37 1 3.1300 -0.7209 1.2495 38 1 0.9938 0.7579 2.3565 39 1 1.0875 -0.5835 6.6734 40 1 2.6853 -1.0253 6.0155 41 1 3.4932 1.2723 6.3061 42 1 2.8071 0.7130 7.8509 43 1 2.9257 3.7256 7.1005 44 1 1.3022 3.9190 7.8044 45 1 4.6391 2.3904 8.2522 46 1 5.4005 1.5271 10.4556 47 1 3.7857 1.3656 12.3082 48 1 0.7396 2.8695 9.9239 49 1 2.2790 2.8112 4.9365 50 1 0.6828 3.4058 5.4541 51 1 0.5639 1.6799 3.6122 52 1 -0.3107 1.1971 5.0875 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459238243.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:44 Heat of formation + Delta-G solvation = 6.859696 kcal Electronic energy + Delta-G solvation = -30805.886674 eV Core-core repulsion = 26805.056015 eV Total energy + Delta-G solvation = -4000.830659 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.63457 -41.10854 -39.29630 -38.11478 -36.07352 -35.03403 -33.45062 -32.88607 -32.48723 -31.78914 -29.05886 -27.56204 -27.45230 -26.76214 -25.66688 -24.82958 -24.31338 -22.96124 -22.09799 -20.63498 -20.60154 -19.29597 -17.96230 -17.81374 -17.35358 -17.19652 -16.77311 -16.69060 -16.51040 -16.33406 -15.80070 -15.46156 -15.25169 -15.11752 -15.04000 -14.68191 -14.55342 -14.19016 -14.11332 -13.99017 -13.94178 -13.26916 -13.22057 -13.09047 -13.04823 -12.67801 -12.64917 -12.61972 -12.33073 -12.26694 -12.24387 -12.12015 -12.03829 -11.48469 -11.33162 -11.09100 -10.71806 -10.70774 -10.39502 -10.38123 -10.15243 -9.97801 -9.59853 -9.23802 -8.01522 -6.16727 0.15557 0.34332 1.44725 1.45829 1.52112 1.65880 2.13575 2.46298 2.70546 3.01072 3.09020 3.21993 3.52995 3.77141 3.81860 3.93098 3.96926 4.06433 4.08712 4.17069 4.22097 4.31204 4.43107 4.47392 4.52655 4.55339 4.62923 4.69767 4.72634 4.77968 4.82500 4.86852 4.91859 4.98987 5.03395 5.05481 5.10422 5.19911 5.20190 5.31523 5.38040 5.48971 5.61743 5.67743 5.68061 5.77996 5.84299 5.95079 6.04797 6.15649 6.22089 6.44446 6.86614 7.00671 7.06262 7.50468 7.57355 8.97276 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.027855 B = 0.001973 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.955858 B =14189.610767 C =14468.065874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.052 3.948 3 C -0.117 4.117 4 C -0.528 4.528 5 H 0.043 0.957 6 C 0.028 3.972 7 N -0.898 5.898 8 Si 0.945 3.055 9 H -0.278 1.278 10 H -0.282 1.282 11 H -0.277 1.277 12 C 0.167 3.833 13 N -0.726 5.726 14 C 0.698 3.302 15 O -0.641 6.641 16 N -0.630 5.630 17 C 0.135 3.865 18 C 0.051 3.949 19 N -0.531 5.531 20 C 0.101 3.899 21 C -0.138 4.138 22 C -0.078 4.078 23 C -0.172 4.172 24 C 0.086 3.914 25 N -0.515 5.515 26 C 0.107 3.893 27 C 0.047 3.953 28 C 0.111 3.889 29 H 0.035 0.965 30 H 0.064 0.936 31 H 0.016 0.984 32 H 0.017 0.983 33 H 0.064 0.936 34 H 0.035 0.965 35 H 0.261 0.739 36 H 0.033 0.967 37 H 0.034 0.966 38 H 0.403 0.597 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.031 0.969 42 H 0.093 0.907 43 H 0.051 0.949 44 H 0.108 0.892 45 H 0.140 0.860 46 H 0.157 0.843 47 H 0.173 0.827 48 H 0.166 0.834 49 H 0.034 0.966 50 H 0.118 0.882 51 H 0.086 0.914 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.549 9.696 24.916 26.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.051 3.949 3 C -0.175 4.175 4 C -0.567 4.567 5 H 0.062 0.938 6 C -0.172 4.172 7 N -0.536 5.536 8 Si 0.772 3.228 9 H -0.204 1.204 10 H -0.208 1.208 11 H -0.203 1.203 12 C 0.043 3.957 13 N -0.383 5.383 14 C 0.399 3.601 15 O -0.524 6.524 16 N -0.368 5.368 17 C 0.012 3.988 18 C -0.078 4.078 19 N -0.256 5.256 20 C -0.026 4.026 21 C -0.140 4.140 22 C -0.104 4.104 23 C -0.192 4.192 24 C -0.071 4.071 25 N -0.224 5.224 26 C -0.050 4.050 27 C -0.082 4.082 28 C -0.011 4.011 29 H 0.054 0.946 30 H 0.083 0.917 31 H 0.035 0.965 32 H 0.036 0.964 33 H 0.083 0.917 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.243 0.757 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.049 0.951 42 H 0.111 0.889 43 H 0.069 0.931 44 H 0.126 0.874 45 H 0.158 0.842 46 H 0.174 0.826 47 H 0.190 0.810 48 H 0.183 0.817 49 H 0.052 0.948 50 H 0.136 0.864 51 H 0.104 0.896 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.889 8.858 25.716 27.213 hybrid contribution 1.570 -0.131 -2.229 2.729 sum 2.459 8.726 23.487 25.176 Atomic orbital electron populations 1.21652 0.97071 0.98599 1.00312 1.18359 0.93289 0.93128 0.90099 1.21639 0.97846 0.97699 1.00320 1.21214 1.31783 1.12168 0.91514 0.93830 1.25441 0.95182 0.95638 1.00891 1.69893 1.36847 1.23199 1.23666 0.85825 0.78603 0.78789 0.79621 1.20395 1.20753 1.20302 1.21139 0.96544 0.94739 0.83327 1.45361 1.55870 1.33216 1.03851 1.16122 0.79633 0.82937 0.81362 1.90837 1.49143 1.25998 1.86378 1.47371 1.54823 1.29534 1.05047 1.21640 0.99891 0.96685 0.80567 1.22551 0.93185 0.91336 1.00700 1.62098 1.44352 1.07779 1.11395 1.21059 1.00143 0.92339 0.89058 1.20820 0.94626 1.01492 0.97057 1.21804 0.95500 0.94925 0.98179 1.22409 1.02492 1.00712 0.93543 1.23200 0.88454 0.95209 1.00210 1.67735 1.17760 1.11309 1.25598 1.22898 1.00472 0.94182 0.87424 1.22507 1.00441 0.97813 0.87397 1.21938 0.94515 0.83636 1.01051 0.94641 0.91707 0.96479 0.96398 0.91735 0.94608 0.92989 0.94841 0.94752 0.75720 0.90551 0.90787 0.95113 0.88919 0.93068 0.87403 0.84217 0.82552 0.80977 0.81694 0.94760 0.86382 0.89628 0.89199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.25 8.08 71.98 0.58 -4.67 16 2 C 0.05 2.40 0.50 -52.93 -0.03 2.38 16 3 C -0.12 -5.13 8.08 71.98 0.58 -4.54 16 4 C -0.53 -27.95 8.01 25.60 0.21 -27.75 16 5 H 0.04 2.36 7.74 -2.91 -0.02 2.34 16 6 C 0.03 1.49 5.15 84.66 0.44 1.92 16 7 N -0.90 -47.31 9.35 21.45 0.20 -47.11 16 8 Si 0.94 42.52 29.54 68.60 2.03 44.54 16 9 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 10 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 12 C 0.17 7.30 4.51 86.38 0.39 7.69 16 13 N -0.73 -26.04 4.87 -478.53 -2.33 -28.37 16 14 C 0.70 25.43 8.31 179.05 1.49 26.92 16 15 O -0.64 -28.90 15.83 -3.98 -0.06 -28.97 16 16 N -0.63 -16.90 3.00 -835.05 -2.51 -19.41 16 17 C 0.14 3.22 6.61 86.50 0.57 3.79 16 18 C 0.05 0.93 4.81 86.54 0.42 1.34 16 19 N -0.53 -7.85 4.77 -898.88 -4.29 -12.14 16 20 C 0.10 1.13 5.45 85.56 0.47 1.59 16 21 C -0.14 -1.79 4.13 -19.77 -0.08 -1.87 16 22 C -0.08 -0.95 7.95 22.46 0.18 -0.77 16 23 C -0.17 -1.93 10.11 22.36 0.23 -1.70 16 24 C 0.09 1.17 11.18 84.69 0.95 2.11 16 25 N -0.52 -9.15 10.36 -195.84 -2.03 -11.18 16 26 C 0.11 1.61 10.86 84.67 0.92 2.53 16 27 C 0.05 0.68 5.58 86.38 0.48 1.16 16 28 C 0.11 2.11 6.59 86.35 0.57 2.68 16 29 H 0.03 1.31 6.86 -2.38 -0.02 1.29 16 30 H 0.06 3.17 6.07 -2.39 -0.01 3.15 16 31 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.06 3.13 6.07 -2.39 -0.01 3.11 16 34 H 0.04 1.29 6.86 -2.39 -0.02 1.27 16 35 H 0.26 13.26 8.31 -92.70 -0.77 12.49 16 36 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.03 1.60 8.14 -2.38 -0.02 1.58 16 38 H 0.40 12.48 3.66 -92.71 -0.34 12.14 16 39 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.07 2.08 7.09 -2.38 -0.02 2.07 16 41 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.09 1.59 5.54 -2.39 -0.01 1.57 16 43 H 0.05 0.55 8.03 -2.38 -0.02 0.53 16 44 H 0.11 0.87 8.09 -2.39 -0.02 0.85 16 45 H 0.14 1.43 8.06 -2.91 -0.02 1.40 16 46 H 0.16 0.99 8.06 -2.91 -0.02 0.96 16 47 H 0.17 1.47 8.06 -2.91 -0.02 1.45 16 48 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 49 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 50 H 0.12 1.11 8.11 -2.39 -0.02 1.09 16 51 H 0.09 1.61 5.63 -2.39 -0.01 1.59 16 52 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -66.69 400.39 -0.07 -66.76 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: 0.58 Total: 23.06 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: 8.35 Total: 12.81 kcal Atomic # 7 Polarization: -107.25 SS G_CDS: -10.96 Total: -118.21 kcal Atomic # 8 Polarization: -28.90 SS G_CDS: -0.06 Total: -28.97 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.54 kcal Total: -66.69 -0.07 -66.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459238243.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.620 kcal (2) G-P(sol) polarization free energy of solvation -66.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds