Wall clock time and date at job start Wed Apr 1 2020 05:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46961 * 2 1 4 4 C 1.52997 * 109.47425 * 239.99455 * 2 1 3 5 5 N 1.46495 * 109.47161 * 60.00405 * 4 2 1 6 6 C 1.34776 * 120.00354 * 180.02562 * 5 4 2 7 7 O 1.21594 * 119.99653 * 354.91508 * 6 5 4 8 8 N 1.34772 * 120.00418 * 174.91903 * 6 5 4 9 9 C 1.47077 * 120.88456 * 184.71893 * 8 6 5 10 10 C 1.53696 * 108.28196 * 128.75184 * 9 8 6 11 11 N 1.46902 * 109.25312 * 54.08260 * 10 9 8 12 12 C 1.46901 * 110.99761 * 172.61279 * 11 10 9 13 13 C 1.50701 * 109.46805 * 294.29824 * 12 11 10 14 14 H 1.08000 * 120.00117 * 0.02562 * 13 12 11 15 15 C 1.37885 * 119.99950 * 179.97438 * 13 12 11 16 16 N 1.31506 * 119.99987 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00061 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.47008 * 0.02562 * 17 15 13 19 19 H 1.48492 * 109.47093 * 119.99907 * 17 15 13 20 20 H 1.48501 * 109.46988 * 240.00669 * 17 15 13 21 21 C 1.46901 * 111.26653 * 296.75708 * 11 10 9 22 22 C 1.47084 * 120.88052 * 4.99200 * 8 6 5 23 23 C 1.50706 * 109.46865 * 119.99269 * 2 1 3 24 24 C 1.38227 * 119.61873 * 285.02578 * 23 2 1 25 25 C 1.38628 * 119.15804 * 179.70025 * 24 23 2 26 26 C 1.38675 * 118.42111 * 0.51532 * 25 24 23 27 27 C 1.38182 * 119.16087 * 359.50484 * 26 25 24 28 28 N 1.31857 * 119.61493 * 105.00261 * 23 2 1 29 29 H 1.08996 * 109.47337 * 300.00725 * 1 2 3 30 30 H 1.09008 * 109.46465 * 60.00540 * 1 2 3 31 31 H 1.09000 * 109.47177 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46626 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47100 * 299.99090 * 3 2 1 34 34 H 1.08999 * 109.47444 * 59.99941 * 3 2 1 35 35 H 1.09000 * 109.46641 * 180.02562 * 4 2 1 36 36 H 1.09003 * 109.47115 * 299.99956 * 4 2 1 37 37 H 0.97008 * 120.00166 * 359.97438 * 5 4 2 38 38 H 1.09007 * 109.62622 * 248.52240 * 9 8 6 39 39 H 1.09008 * 109.62679 * 9.09520 * 9 8 6 40 40 H 1.09002 * 109.64699 * 294.08453 * 10 9 8 41 41 H 1.08991 * 109.42387 * 173.94814 * 10 9 8 42 42 H 1.08997 * 109.47451 * 54.29884 * 12 11 10 43 43 H 1.09001 * 109.46927 * 174.30109 * 12 11 10 44 44 H 0.97001 * 120.00615 * 179.97438 * 16 15 13 45 45 H 1.08998 * 109.49380 * 303.14375 * 21 11 10 46 46 H 1.09008 * 109.49185 * 183.06725 * 21 11 10 47 47 H 1.09000 * 109.62958 * 350.89648 * 22 8 6 48 48 H 1.08999 * 109.62651 * 111.47923 * 22 8 6 49 49 H 1.07995 * 120.42067 * 359.95734 * 24 23 2 50 50 H 1.07997 * 120.79295 * 180.27356 * 25 24 23 51 51 H 1.08004 * 120.42265 * 179.77774 * 26 25 24 52 52 H 1.08006 * 119.61378 * 180.25059 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 1.5519 -0.0308 -2.4453 6 6 1.8771 -0.4916 -3.6694 7 8 2.6498 -1.4236 -3.7826 8 7 1.3460 0.0806 -4.7680 9 6 1.6056 -0.4705 -6.1067 10 6 0.2572 -0.6610 -6.8194 11 7 -0.4827 0.6080 -6.8035 12 6 -1.6978 0.5192 -7.6242 13 6 -1.3149 0.3370 -9.0703 14 1 -0.2732 0.2914 -9.3515 15 6 -2.2947 0.2276 -10.0344 16 7 -3.5632 0.2827 -9.6919 17 14 -1.8201 0.0012 -11.8268 18 1 -0.3402 -0.0292 -11.9471 19 1 -2.3834 -1.2772 -12.3303 20 1 -2.3592 1.1294 -12.6279 21 6 -0.8037 1.0204 -5.4306 22 6 0.4961 1.2762 -4.6604 23 6 2.0323 -0.7103 1.2306 24 6 1.9663 -0.0790 2.4586 25 6 2.4253 -0.7436 3.5852 26 6 2.9458 -2.0199 3.4324 27 6 2.9799 -2.5868 2.1727 28 7 2.5293 -1.9269 1.1235 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 3.1301 -0.7217 -1.2488 36 1 1.6768 -1.7490 -1.2490 37 1 0.9939 0.7577 -2.3565 38 1 2.2281 0.2221 -6.6733 39 1 2.1120 -1.4314 -6.0152 40 1 -0.3237 -1.4272 -6.3060 41 1 0.4325 -0.9669 -7.8507 42 1 -2.2960 -0.3311 -7.2969 43 1 -2.2780 1.4354 -7.5146 44 1 -4.2525 0.2061 -10.3701 45 1 -1.3698 0.2307 -4.9366 46 1 -1.3980 1.9339 -5.4547 47 1 0.2685 1.4706 -3.6124 48 1 1.0140 2.1334 -5.0907 49 1 1.5585 0.9177 2.5398 50 1 2.3821 -0.2771 4.5583 51 1 3.3158 -2.5656 4.2879 52 1 3.3800 -3.5819 2.0460 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601612939.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:54 Heat of formation + Delta-G solvation = 21.172406 kcal Electronic energy + Delta-G solvation = -30556.394522 eV Core-core repulsion = 26556.184508 eV Total energy + Delta-G solvation = -4000.210014 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.98849 -40.08410 -37.92648 -36.99254 -34.35834 -33.56458 -32.87288 -32.33258 -30.75280 -30.33670 -28.30276 -27.70028 -26.63613 -25.35805 -23.99470 -23.62082 -23.01421 -22.09186 -20.73232 -19.90448 -19.34410 -17.98538 -17.19271 -16.55688 -16.36515 -15.99750 -15.63818 -15.57515 -15.00419 -14.73781 -14.55258 -14.47665 -14.34781 -14.01900 -13.79757 -13.72046 -13.62607 -13.40667 -13.39590 -12.97784 -12.64407 -12.44577 -12.17786 -12.07364 -11.94949 -11.58139 -11.45138 -11.27114 -11.19104 -11.07463 -10.82387 -10.70997 -10.57361 -10.47835 -10.25974 -9.92571 -9.82121 -9.71497 -9.35614 -9.24376 -9.01339 -8.47123 -8.25197 -7.29831 -6.05116 -4.06581 0.71597 0.90663 2.79991 3.30706 3.38314 3.40538 3.42177 3.43324 3.75271 3.96838 4.22837 4.40785 4.45416 4.53725 4.58207 4.66611 4.73069 4.76912 4.81064 5.15931 5.19970 5.24812 5.29365 5.30271 5.36459 5.39263 5.42059 5.46944 5.53445 5.67902 5.68693 5.72447 5.74702 5.81370 5.86861 5.92142 5.95870 6.04289 6.08538 6.22084 6.29563 6.46370 6.56942 6.60613 6.75059 7.13210 7.24140 7.30413 7.65163 7.76434 8.02637 8.08872 8.15477 8.49630 8.78623 9.01189 9.58035 11.05771 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.027660 B = 0.001892 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.051240 B =14798.131578 C =15142.287220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.028 4.028 3 C -0.142 4.142 4 C 0.163 3.837 5 N -0.751 5.751 6 C 0.707 3.293 7 O -0.594 6.594 8 N -0.626 5.626 9 C 0.134 3.866 10 C 0.051 3.949 11 N -0.534 5.534 12 C 0.193 3.807 13 C -0.508 4.508 14 H 0.065 0.935 15 C 0.055 3.945 16 N -0.898 5.898 17 Si 0.898 3.102 18 H -0.271 1.271 19 H -0.285 1.285 20 H -0.284 1.284 21 C 0.040 3.960 22 C 0.119 3.881 23 C 0.147 3.853 24 C -0.167 4.167 25 C -0.074 4.074 26 C -0.180 4.180 27 C 0.104 3.896 28 N -0.476 5.476 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.392 0.608 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.024 0.976 41 H 0.097 0.903 42 H -0.009 1.009 43 H 0.031 0.969 44 H 0.261 0.739 45 H 0.026 0.974 46 H 0.080 0.920 47 H 0.067 0.933 48 H 0.075 0.925 49 H 0.135 0.865 50 H 0.134 0.866 51 H 0.134 0.866 52 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.453 1.686 28.427 30.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.029 4.029 3 C -0.200 4.200 4 C 0.039 3.961 5 N -0.410 5.410 6 C 0.409 3.591 7 O -0.473 6.473 8 N -0.364 5.364 9 C 0.011 3.989 10 C -0.078 4.078 11 N -0.260 5.260 12 C 0.068 3.932 13 C -0.546 4.546 14 H 0.083 0.917 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.726 3.274 18 H -0.196 1.196 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.089 4.089 22 C -0.004 4.004 23 C 0.008 3.992 24 C -0.187 4.187 25 C -0.100 4.100 26 C -0.200 4.200 27 C -0.053 4.053 28 N -0.185 5.185 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.230 0.770 38 H 0.088 0.912 39 H 0.106 0.894 40 H 0.043 0.957 41 H 0.115 0.885 42 H 0.009 0.991 43 H 0.049 0.951 44 H 0.070 0.930 45 H 0.045 0.955 46 H 0.098 0.902 47 H 0.085 0.915 48 H 0.093 0.907 49 H 0.153 0.847 50 H 0.151 0.849 51 H 0.152 0.848 52 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 11.171 0.926 27.240 29.456 hybrid contribution -0.853 0.068 0.403 0.946 sum 10.318 0.994 27.643 29.523 Atomic orbital electron populations 1.21894 0.92373 1.02975 1.02410 1.19736 0.96500 0.95157 0.91500 1.21960 1.01824 0.93695 1.02499 1.20953 0.99010 0.95680 0.80450 1.45352 1.57382 1.33655 1.04634 1.15800 0.80779 0.82216 0.80323 1.90895 1.39122 1.31628 1.85628 1.47402 1.52273 1.30650 1.06048 1.21816 0.97553 0.99505 0.80042 1.22456 0.93085 0.91030 1.01279 1.62078 1.26082 1.29739 1.08066 1.19731 0.85218 0.96220 0.91994 1.21191 0.93269 1.49082 0.91103 0.91685 1.24995 0.94877 0.95451 0.99310 1.69962 0.99348 1.50780 1.33703 0.86437 0.78723 0.77584 0.84661 1.19582 1.21135 1.21038 1.22382 0.94894 1.00542 0.91107 1.21741 0.91887 0.87894 0.98914 1.20950 0.93986 0.90515 0.93737 1.21906 1.02135 1.01622 0.93001 1.21581 0.95061 0.94442 0.98944 1.22164 1.01910 0.96636 0.99255 1.22810 0.94958 0.99534 0.87985 1.67534 1.09441 1.07869 1.33624 0.91998 0.91526 0.91863 0.91930 0.91536 0.91807 0.91515 0.90626 0.77047 0.91232 0.89381 0.95735 0.88532 0.99130 0.95084 0.92966 0.95546 0.90196 0.91496 0.90689 0.84686 0.84852 0.84837 0.82619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 8.23 37.16 0.31 -0.74 16 2 C -0.03 -0.23 0.63 -155.66 -0.10 -0.33 16 3 C -0.14 -0.94 7.91 37.16 0.29 -0.65 16 4 C 0.16 1.92 3.90 -4.05 -0.02 1.91 16 5 N -0.75 -9.17 4.87 -65.23 -0.32 -9.49 16 6 C 0.71 11.53 8.31 -86.92 -0.72 10.81 16 7 O -0.59 -11.92 15.83 5.28 0.08 -11.84 16 8 N -0.63 -9.90 3.00 -177.90 -0.53 -10.43 16 9 C 0.13 2.29 6.61 -3.37 -0.02 2.27 16 10 C 0.05 0.99 5.47 -3.46 -0.02 0.97 16 11 N -0.53 -11.11 4.62 -235.47 -1.09 -12.20 16 12 C 0.19 4.91 4.72 -4.97 -0.02 4.89 16 13 C -0.51 -13.98 8.41 -34.44 -0.29 -14.27 16 14 H 0.06 1.77 7.13 -52.49 -0.37 1.39 16 15 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 16 N -0.90 -26.41 13.29 55.43 0.74 -25.67 16 17 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 C 0.04 0.68 5.62 -3.70 -0.02 0.66 16 22 C 0.12 1.61 6.59 -3.60 -0.02 1.58 16 23 C 0.15 1.32 5.56 -82.58 -0.46 0.86 16 24 C -0.17 -1.14 9.08 -39.44 -0.36 -1.50 16 25 C -0.07 -0.44 10.18 -39.28 -0.40 -0.84 16 26 C -0.18 -1.11 10.11 -39.44 -0.40 -1.51 16 27 C 0.10 0.84 11.18 -17.55 -0.20 0.64 16 28 N -0.48 -4.99 9.03 -9.47 -0.09 -5.07 16 29 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 30 H 0.07 0.48 6.86 -51.92 -0.36 0.12 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.41 6.86 -51.93 -0.36 0.06 16 34 H 0.06 0.31 6.70 -51.93 -0.35 -0.04 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.08 1.05 7.85 -51.93 -0.41 0.65 16 37 H 0.39 3.82 3.66 -40.82 -0.15 3.67 16 38 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 39 H 0.09 1.54 7.09 -51.92 -0.37 1.17 16 40 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.10 2.01 6.67 -51.93 -0.35 1.66 16 42 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 43 H 0.03 0.83 7.97 -51.93 -0.41 0.42 16 44 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 45 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.08 1.26 7.99 -51.92 -0.41 0.85 16 47 H 0.07 0.68 5.63 -51.93 -0.29 0.38 16 48 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 49 H 0.14 0.65 6.73 -52.49 -0.35 0.29 16 50 H 0.13 0.45 8.06 -52.49 -0.42 0.02 16 51 H 0.13 0.49 8.06 -52.48 -0.42 0.06 16 52 H 0.16 0.93 8.06 -52.48 -0.42 0.50 16 LS Contribution 406.31 15.07 6.12 6.12 Total: -1.00 -34.12 406.31 -11.03 -45.16 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -8.39 Total: 0.79 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: -2.54 Total: 6.20 kcal Atomic # 7 Polarization: -61.58 SS G_CDS: -1.29 Total: -62.87 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.08 Total: -11.84 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.12 -11.03 -45.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601612939.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.329 kcal (2) G-P(sol) polarization free energy of solvation -34.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds