Wall clock time and date at job start Wed Apr 1 2020 05:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46961 * 2 1 4 4 C 1.52997 * 109.47425 * 239.99455 * 2 1 3 5 5 N 1.46495 * 109.47161 * 60.00405 * 4 2 1 6 6 C 1.34776 * 120.00354 * 180.02562 * 5 4 2 7 7 O 1.21594 * 119.99653 * 354.91508 * 6 5 4 8 8 N 1.34772 * 120.00418 * 174.91903 * 6 5 4 9 9 C 1.47077 * 120.88456 * 184.71893 * 8 6 5 10 10 C 1.53696 * 108.28196 * 128.75184 * 9 8 6 11 11 N 1.46902 * 109.25312 * 54.08260 * 10 9 8 12 12 C 1.46901 * 110.99761 * 172.61279 * 11 10 9 13 13 C 1.50701 * 109.46805 * 294.29824 * 12 11 10 14 14 H 1.08000 * 120.00117 * 0.02562 * 13 12 11 15 15 C 1.37885 * 119.99950 * 179.97438 * 13 12 11 16 16 N 1.31506 * 119.99987 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00061 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.47008 * 0.02562 * 17 15 13 19 19 H 1.48492 * 109.47093 * 119.99907 * 17 15 13 20 20 H 1.48501 * 109.46988 * 240.00669 * 17 15 13 21 21 C 1.46901 * 111.26653 * 296.75708 * 11 10 9 22 22 C 1.47084 * 120.88052 * 4.99200 * 8 6 5 23 23 C 1.50706 * 109.46865 * 119.99269 * 2 1 3 24 24 C 1.38227 * 119.61873 * 285.02578 * 23 2 1 25 25 C 1.38628 * 119.15804 * 179.70025 * 24 23 2 26 26 C 1.38675 * 118.42111 * 0.51532 * 25 24 23 27 27 C 1.38182 * 119.16087 * 359.50484 * 26 25 24 28 28 N 1.31857 * 119.61493 * 105.00261 * 23 2 1 29 29 H 1.08996 * 109.47337 * 300.00725 * 1 2 3 30 30 H 1.09008 * 109.46465 * 60.00540 * 1 2 3 31 31 H 1.09000 * 109.47177 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46626 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47100 * 299.99090 * 3 2 1 34 34 H 1.08999 * 109.47444 * 59.99941 * 3 2 1 35 35 H 1.09000 * 109.46641 * 180.02562 * 4 2 1 36 36 H 1.09003 * 109.47115 * 299.99956 * 4 2 1 37 37 H 0.97008 * 120.00166 * 359.97438 * 5 4 2 38 38 H 1.09007 * 109.62622 * 248.52240 * 9 8 6 39 39 H 1.09008 * 109.62679 * 9.09520 * 9 8 6 40 40 H 1.09002 * 109.64699 * 294.08453 * 10 9 8 41 41 H 1.08991 * 109.42387 * 173.94814 * 10 9 8 42 42 H 1.08997 * 109.47451 * 54.29884 * 12 11 10 43 43 H 1.09001 * 109.46927 * 174.30109 * 12 11 10 44 44 H 0.97001 * 120.00615 * 179.97438 * 16 15 13 45 45 H 1.08998 * 109.49380 * 303.14375 * 21 11 10 46 46 H 1.09008 * 109.49185 * 183.06725 * 21 11 10 47 47 H 1.09000 * 109.62958 * 350.89648 * 22 8 6 48 48 H 1.08999 * 109.62651 * 111.47923 * 22 8 6 49 49 H 1.07995 * 120.42067 * 359.95734 * 24 23 2 50 50 H 1.07997 * 120.79295 * 180.27356 * 25 24 23 51 51 H 1.08004 * 120.42265 * 179.77774 * 26 25 24 52 52 H 1.08006 * 119.61378 * 180.25059 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 1.5519 -0.0308 -2.4453 6 6 1.8771 -0.4916 -3.6694 7 8 2.6498 -1.4236 -3.7826 8 7 1.3460 0.0806 -4.7680 9 6 1.6056 -0.4705 -6.1067 10 6 0.2572 -0.6610 -6.8194 11 7 -0.4827 0.6080 -6.8035 12 6 -1.6978 0.5192 -7.6242 13 6 -1.3149 0.3370 -9.0703 14 1 -0.2732 0.2914 -9.3515 15 6 -2.2947 0.2276 -10.0344 16 7 -3.5632 0.2827 -9.6919 17 14 -1.8201 0.0012 -11.8268 18 1 -0.3402 -0.0292 -11.9471 19 1 -2.3834 -1.2772 -12.3303 20 1 -2.3592 1.1294 -12.6279 21 6 -0.8037 1.0204 -5.4306 22 6 0.4961 1.2762 -4.6604 23 6 2.0323 -0.7103 1.2306 24 6 1.9663 -0.0790 2.4586 25 6 2.4253 -0.7436 3.5852 26 6 2.9458 -2.0199 3.4324 27 6 2.9799 -2.5868 2.1727 28 7 2.5293 -1.9269 1.1235 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 3.1301 -0.7217 -1.2488 36 1 1.6768 -1.7490 -1.2490 37 1 0.9939 0.7577 -2.3565 38 1 2.2281 0.2221 -6.6733 39 1 2.1120 -1.4314 -6.0152 40 1 -0.3237 -1.4272 -6.3060 41 1 0.4325 -0.9669 -7.8507 42 1 -2.2960 -0.3311 -7.2969 43 1 -2.2780 1.4354 -7.5146 44 1 -4.2525 0.2061 -10.3701 45 1 -1.3698 0.2307 -4.9366 46 1 -1.3980 1.9339 -5.4547 47 1 0.2685 1.4706 -3.6124 48 1 1.0140 2.1334 -5.0907 49 1 1.5585 0.9177 2.5398 50 1 2.3821 -0.2771 4.5583 51 1 3.3158 -2.5656 4.2879 52 1 3.3800 -3.5819 2.0460 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601612939.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:53 Heat of formation + Delta-G solvation = -1.518485 kcal Electronic energy + Delta-G solvation = -30557.378473 eV Core-core repulsion = 26556.184508 eV Total energy + Delta-G solvation = -4001.193964 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.75061 -41.18038 -39.23212 -37.99809 -35.97960 -34.74767 -34.20848 -33.39103 -32.04663 -31.03146 -29.98836 -28.24123 -27.81065 -26.90607 -24.81705 -24.40989 -24.10569 -23.79547 -22.19204 -20.77145 -20.48856 -19.21226 -18.48436 -17.78773 -17.28455 -17.08870 -16.77069 -16.67395 -16.22959 -16.00047 -15.85573 -15.50072 -15.40210 -15.32438 -15.09996 -14.78653 -14.75396 -14.39125 -14.21699 -13.98459 -13.87952 -13.52603 -13.29036 -13.08848 -12.98640 -12.74650 -12.72546 -12.58887 -12.35750 -12.31011 -12.22102 -12.11911 -12.09774 -11.81376 -11.74003 -11.37142 -11.16515 -10.77973 -10.61706 -10.31802 -10.23049 -9.87262 -9.58398 -9.03247 -8.20259 -6.29594 0.19957 0.41660 1.42145 1.43125 1.56233 1.58334 2.10339 2.41219 2.84993 2.88113 3.12253 3.20266 3.23681 3.59422 3.88983 3.92165 3.95675 4.06098 4.10194 4.12210 4.15347 4.26254 4.28046 4.30881 4.44663 4.56294 4.64191 4.66055 4.72104 4.74852 4.77870 4.81911 4.85861 4.92062 4.95460 4.99574 5.03001 5.04315 5.18157 5.21848 5.24169 5.25984 5.32353 5.37468 5.45594 5.47525 5.65102 5.83743 5.92031 6.04427 6.26387 6.59411 6.86225 6.92999 7.10969 7.40099 7.51476 8.90989 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.027660 B = 0.001892 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.051240 B =14798.131578 C =15142.287220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.019 4.019 3 C -0.140 4.140 4 C 0.172 3.828 5 N -0.730 5.730 6 C 0.704 3.296 7 O -0.636 6.636 8 N -0.628 5.628 9 C 0.145 3.855 10 C 0.058 3.942 11 N -0.537 5.537 12 C 0.208 3.792 13 C -0.522 4.522 14 H 0.065 0.935 15 C 0.002 3.998 16 N -0.934 5.934 17 Si 0.968 3.032 18 H -0.263 1.263 19 H -0.282 1.282 20 H -0.278 1.278 21 C 0.037 3.963 22 C 0.127 3.873 23 C 0.124 3.876 24 C -0.166 4.166 25 C -0.076 4.076 26 C -0.176 4.176 27 C 0.080 3.920 28 N -0.519 5.519 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.042 0.958 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.045 0.955 36 H 0.047 0.953 37 H 0.407 0.593 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.008 0.992 41 H 0.080 0.920 42 H -0.042 1.042 43 H 0.013 0.987 44 H 0.264 0.736 45 H 0.018 0.982 46 H 0.092 0.908 47 H 0.108 0.892 48 H 0.090 0.910 49 H 0.160 0.840 50 H 0.165 0.835 51 H 0.160 0.840 52 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.071 3.727 30.385 32.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.020 4.020 3 C -0.197 4.197 4 C 0.047 3.953 5 N -0.390 5.390 6 C 0.405 3.595 7 O -0.518 6.518 8 N -0.365 5.365 9 C 0.022 3.978 10 C -0.072 4.072 11 N -0.262 5.262 12 C 0.082 3.918 13 C -0.560 4.560 14 H 0.083 0.917 15 C -0.196 4.196 16 N -0.575 5.575 17 Si 0.793 3.207 18 H -0.187 1.187 19 H -0.208 1.208 20 H -0.203 1.203 21 C -0.092 4.092 22 C 0.004 3.996 23 C -0.015 4.015 24 C -0.185 4.185 25 C -0.101 4.101 26 C -0.196 4.196 27 C -0.076 4.076 28 N -0.228 5.228 29 H 0.103 0.897 30 H 0.091 0.909 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.108 0.892 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.247 0.753 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.026 0.974 41 H 0.098 0.902 42 H -0.025 1.025 43 H 0.031 0.969 44 H 0.073 0.927 45 H 0.036 0.964 46 H 0.110 0.890 47 H 0.126 0.874 48 H 0.108 0.892 49 H 0.178 0.822 50 H 0.182 0.818 51 H 0.177 0.823 52 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 11.784 3.005 29.240 31.668 hybrid contribution -1.049 -0.611 -0.099 1.218 sum 10.735 2.394 29.141 31.148 Atomic orbital electron populations 1.21895 0.91600 1.02104 1.03827 1.19694 0.96979 0.95866 0.89498 1.21972 1.01249 0.92330 1.04152 1.20843 0.97700 0.94949 0.81804 1.45169 1.56643 1.33689 1.03450 1.15978 0.80496 0.81767 0.81248 1.90869 1.41072 1.33519 1.86309 1.47409 1.52496 1.31231 1.05391 1.21579 0.95693 0.99782 0.80769 1.22359 0.94099 0.90166 1.00535 1.62002 1.23875 1.30038 1.10235 1.19386 0.86384 0.93771 0.92263 1.21506 0.93343 1.48876 0.92309 0.91658 1.25889 0.94767 0.95027 1.03952 1.70079 1.00434 1.51674 1.35270 0.85351 0.78776 0.77577 0.79018 1.18657 1.20790 1.20349 1.22538 0.97059 1.00618 0.88981 1.21868 0.89670 0.87101 1.00965 1.21113 0.95040 0.90536 0.94763 1.22170 1.01576 1.02521 0.92275 1.22013 0.93897 0.94195 1.00041 1.22469 1.00938 0.97027 0.99121 1.23100 0.95663 1.00192 0.88644 1.67459 1.10923 1.09165 1.35277 0.89711 0.90913 0.93902 0.92905 0.90795 0.89225 0.93615 0.93465 0.75268 0.90185 0.89952 0.97356 0.90187 1.02457 0.96874 0.92737 0.96362 0.88951 0.87396 0.89226 0.82239 0.81762 0.82268 0.81896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 8.23 71.98 0.59 -1.23 16 2 C -0.02 -0.30 0.63 -52.92 -0.03 -0.33 16 3 C -0.14 -1.47 7.91 71.98 0.57 -0.90 16 4 C 0.17 4.11 3.90 86.38 0.34 4.44 16 5 N -0.73 -17.13 4.87 -478.55 -2.33 -19.47 16 6 C 0.70 22.71 8.31 179.06 1.49 24.20 16 7 O -0.64 -26.12 15.83 -4.01 -0.06 -26.18 16 8 N -0.63 -19.23 3.00 -835.03 -2.51 -21.73 16 9 C 0.15 4.96 6.61 86.50 0.57 5.53 16 10 C 0.06 2.31 5.47 86.54 0.47 2.79 16 11 N -0.54 -22.46 4.62 -898.88 -4.15 -26.61 16 12 C 0.21 10.89 4.72 85.56 0.40 11.29 16 13 C -0.52 -29.19 8.41 25.60 0.22 -28.98 16 14 H 0.07 3.58 7.13 -2.91 -0.02 3.56 16 15 C 0.00 0.09 5.46 84.66 0.46 0.56 16 16 N -0.93 -55.82 13.29 21.45 0.28 -55.54 16 17 Si 0.97 44.19 29.54 68.60 2.03 46.22 16 18 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 19 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 20 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 21 C 0.04 1.21 5.62 86.38 0.49 1.69 16 22 C 0.13 3.09 6.59 86.35 0.57 3.66 16 23 C 0.12 2.12 5.56 42.55 0.24 2.36 16 24 C -0.17 -1.86 9.08 22.36 0.20 -1.65 16 25 C -0.08 -0.68 10.18 22.47 0.23 -0.45 16 26 C -0.18 -1.86 10.11 22.36 0.23 -1.64 16 27 C 0.08 1.30 11.18 84.67 0.95 2.25 16 28 N -0.52 -11.22 9.03 -183.88 -1.66 -12.88 16 29 H 0.08 0.75 8.09 -2.39 -0.02 0.74 16 30 H 0.07 0.85 6.86 -2.38 -0.02 0.84 16 31 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.07 0.66 6.86 -2.39 -0.02 0.65 16 34 H 0.09 0.50 6.70 -2.39 -0.02 0.49 16 35 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.05 1.41 7.85 -2.39 -0.02 1.39 16 37 H 0.41 6.87 3.66 -92.70 -0.34 6.53 16 38 H 0.08 2.59 8.14 -2.38 -0.02 2.57 16 39 H 0.08 2.93 7.09 -2.38 -0.02 2.91 16 40 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 41 H 0.08 3.44 6.67 -2.39 -0.02 3.43 16 42 H -0.04 -2.45 8.12 -2.39 -0.02 -2.47 16 43 H 0.01 0.73 7.97 -2.39 -0.02 0.71 16 44 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 45 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.09 2.79 7.99 -2.38 -0.02 2.77 16 47 H 0.11 1.76 5.63 -2.39 -0.01 1.74 16 48 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 49 H 0.16 0.88 6.73 -2.91 -0.02 0.86 16 50 H 0.16 0.41 8.06 -2.91 -0.02 0.39 16 51 H 0.16 0.75 8.06 -2.91 -0.02 0.73 16 52 H 0.16 2.08 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -77.62 406.31 0.15 -77.47 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 0.57 Total: 15.14 kcal Atomic # 6 Polarization: 15.61 SS G_CDS: 7.98 Total: 23.59 kcal Atomic # 7 Polarization: -125.86 SS G_CDS: -10.37 Total: -136.23 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -0.06 Total: -26.18 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -77.62 0.15 -77.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601612939.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.953 kcal (2) G-P(sol) polarization free energy of solvation -77.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds