Wall clock time and date at job start Wed Apr 1 2020 05:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50701 * 120.00164 * 2 1 4 4 C 1.50703 * 119.99843 * 179.97438 * 2 1 3 5 5 N 1.46503 * 109.46915 * 112.35314 * 4 2 1 6 6 C 1.36738 * 127.13366 * 82.05870 * 5 4 2 7 7 C 1.50693 * 126.34880 * 359.94038 * 6 5 4 8 8 H 1.09002 * 110.45695 * 357.39643 * 7 6 5 9 9 C 1.54507 * 110.51045 * 120.00057 * 7 6 5 10 10 C 1.54485 * 104.06364 * 118.64404 * 9 7 6 11 11 O 1.44434 * 104.80054 * 23.98020 * 10 9 7 12 12 C 1.44421 * 105.27418 * 319.48727 * 11 10 9 13 13 N 1.30293 * 107.30103 * 179.97438 * 6 5 4 14 14 N 1.28527 * 110.05644 * 359.97438 * 13 6 5 15 15 C 1.31216 * 109.85893 * 359.74413 * 14 13 6 16 16 N 1.38584 * 126.47347 * 180.25957 * 15 14 13 17 17 C 1.46849 * 111.00016 * 237.92227 * 16 15 14 18 18 C 1.53036 * 109.52215 * 174.16106 * 17 16 15 19 19 C 1.53114 * 109.28171 * 59.17746 * 18 17 16 20 20 C 1.53125 * 109.16123 * 302.34710 * 19 18 17 21 21 H 1.09000 * 109.49709 * 297.67410 * 20 19 18 22 22 C 1.50703 * 109.50363 * 177.59124 * 20 19 18 23 23 H 1.07991 * 119.99837 * 272.84017 * 22 20 19 24 24 C 1.37874 * 119.99486 * 92.83749 * 22 20 19 25 25 N 1.31515 * 119.99731 * 177.49760 * 24 22 20 26 26 Si 1.86795 * 120.00281 * 357.50057 * 24 22 20 27 27 H 1.48504 * 109.47477 * 84.96850 * 26 24 22 28 28 H 1.48502 * 109.47357 * 204.96596 * 26 24 22 29 29 H 1.48498 * 109.47364 * 324.96993 * 26 24 22 30 30 C 1.46847 * 110.99963 * 113.71099 * 16 15 14 31 31 H 1.07996 * 120.00515 * 187.46416 * 1 2 3 32 32 H 1.08002 * 120.00139 * 7.45855 * 1 2 3 33 33 H 1.08999 * 109.47244 * 359.97438 * 3 2 1 34 34 H 1.08997 * 109.46837 * 120.00148 * 3 2 1 35 35 H 1.09006 * 109.46649 * 239.99580 * 3 2 1 36 36 H 1.08999 * 109.47600 * 232.35444 * 4 2 1 37 37 H 1.09007 * 109.47008 * 352.35888 * 4 2 1 38 38 H 1.08998 * 110.51316 * 237.28577 * 9 7 6 39 39 H 1.08996 * 110.51629 * 359.86710 * 9 7 6 40 40 H 1.08998 * 110.37617 * 142.80667 * 10 9 7 41 41 H 1.08993 * 110.37313 * 265.03967 * 10 9 7 42 42 H 1.09006 * 110.37470 * 281.68141 * 12 11 10 43 43 H 1.09000 * 110.36967 * 159.34418 * 12 11 10 44 44 H 1.08999 * 109.46009 * 294.17406 * 17 16 15 45 45 H 1.08998 * 109.45999 * 54.15367 * 17 16 15 46 46 H 1.08999 * 109.49895 * 179.12175 * 18 17 16 47 47 H 1.09000 * 109.50321 * 299.23557 * 18 17 16 48 48 H 1.09000 * 109.52125 * 62.24884 * 19 18 17 49 49 H 1.09000 * 109.52511 * 182.37586 * 19 18 17 50 50 H 0.96999 * 119.99894 * 180.02562 * 25 24 22 51 51 H 1.08999 * 109.46046 * 305.85653 * 30 16 15 52 52 H 1.08993 * 109.46153 * 65.82094 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3051 0.0006 5 7 2.7625 -1.4660 -1.2768 6 6 3.9667 -0.9246 -1.6327 7 6 4.8356 -0.0391 -0.7773 8 1 4.3508 0.1619 0.1781 9 6 6.2195 -0.6895 -0.5559 10 6 7.2110 0.3142 -1.1852 11 8 6.5207 1.5826 -1.1555 12 6 5.1546 1.2807 -1.5140 13 7 4.2232 -1.3159 -2.8487 14 7 3.2707 -2.0622 -3.2818 15 6 2.3503 -2.1926 -2.3557 16 7 1.1791 -2.9265 -2.4558 17 6 0.0038 -2.0753 -2.2312 18 6 -1.2699 -2.8827 -2.4918 19 6 -1.3041 -4.0906 -1.5515 20 6 -0.0456 -4.9347 -1.7716 21 1 -0.0343 -5.3112 -2.7944 22 6 -0.0424 -6.0938 -0.8085 23 1 0.3770 -5.9739 0.1794 24 6 -0.5750 -7.3074 -1.1888 25 7 -0.5280 -8.3327 -0.3665 26 14 -1.3633 -7.4953 -2.8718 27 1 -0.3148 -7.8005 -3.8783 28 1 -2.3513 -8.6033 -2.8348 29 1 -2.0503 -6.2315 -3.2406 30 6 1.1926 -4.0678 -1.5317 31 1 -0.5401 -0.9273 0.1215 32 1 -0.5400 0.9274 -0.1214 33 1 1.3552 2.1336 -0.0005 34 1 2.6901 1.3627 0.8900 35 1 2.6902 1.3627 -0.8900 36 1 2.7887 -1.3057 0.8143 37 1 1.3629 -2.1290 0.1376 38 1 6.4200 -0.8078 0.5089 39 1 6.2744 -1.6527 -1.0632 40 1 8.1252 0.3659 -0.5939 41 1 7.4396 0.0287 -2.2119 42 1 5.0664 1.1445 -2.5919 43 1 4.4892 2.0748 -1.1753 44 1 0.0041 -1.7203 -1.2006 45 1 0.0381 -1.2225 -2.9091 46 1 -2.1422 -2.2550 -2.3099 47 1 -1.2775 -3.2265 -3.5262 48 1 -1.3357 -3.7466 -0.5177 49 1 -2.1885 -4.6917 -1.7627 50 1 -0.9024 -9.1865 -0.6341 51 1 2.0904 -4.6620 -1.7016 52 1 1.1874 -3.7034 -0.5045 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829129367.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:28 Heat of formation + Delta-G solvation = 65.131902 kcal Electronic energy + Delta-G solvation = -32660.301968 eV Core-core repulsion = 28661.998181 eV Total energy + Delta-G solvation = -3998.303787 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.06218 -39.58074 -38.86221 -37.05363 -34.23888 -33.68450 -32.93423 -32.01273 -30.56833 -29.96929 -28.51539 -27.76878 -27.11658 -25.21890 -24.07268 -23.69037 -22.56895 -21.75280 -20.95912 -20.40099 -19.24855 -18.94784 -17.50039 -17.12119 -16.71657 -16.28326 -16.17078 -15.85579 -15.33757 -15.28933 -14.82972 -14.28066 -14.17207 -14.03162 -13.91012 -13.70046 -13.45496 -13.05662 -12.96501 -12.67253 -12.58536 -12.46427 -12.34907 -12.11540 -11.96029 -11.75654 -11.58122 -11.45169 -11.29823 -11.19877 -11.15027 -10.84048 -10.37289 -10.35699 -10.14982 -10.05857 -10.00570 -9.82152 -9.59924 -9.51520 -9.18628 -8.80082 -8.62494 -8.44081 -6.18356 -4.20245 1.48246 1.77920 2.53625 2.91932 3.26784 3.34921 3.37547 3.56123 3.67992 4.13650 4.18102 4.26602 4.31196 4.35371 4.45333 4.66861 4.70909 4.86818 4.97484 5.01390 5.04952 5.09296 5.15890 5.17671 5.20855 5.29794 5.42201 5.44686 5.48218 5.54977 5.56650 5.59810 5.64964 5.65820 5.71713 5.84155 5.88510 5.96845 6.04709 6.10839 6.18597 6.21767 6.31302 6.40948 6.44494 6.54200 6.59460 6.73796 6.99526 7.15599 7.31375 7.48253 7.65196 8.37168 8.83246 8.90768 9.44111 10.94255 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015850 B = 0.003260 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.129273 B = 8585.864967 C = 9289.277928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.161 4.161 3 C -0.122 4.122 4 C 0.130 3.870 5 N -0.489 5.489 6 C 0.174 3.826 7 C -0.033 4.033 8 H 0.099 0.901 9 C -0.144 4.144 10 C 0.048 3.952 11 O -0.372 6.372 12 C 0.058 3.942 13 N -0.284 5.284 14 N -0.272 5.272 15 C 0.367 3.633 16 N -0.447 5.447 17 C 0.047 3.953 18 C -0.121 4.121 19 C -0.117 4.117 20 C 0.025 3.975 21 H 0.044 0.956 22 C -0.518 4.518 23 H 0.071 0.929 24 C 0.076 3.924 25 N -0.897 5.897 26 Si 0.876 3.124 27 H -0.274 1.274 28 H -0.290 1.290 29 H -0.260 1.260 30 C 0.074 3.926 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.099 0.901 37 H 0.110 0.890 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.095 0.905 44 H 0.054 0.946 45 H 0.068 0.932 46 H 0.061 0.939 47 H 0.068 0.932 48 H 0.051 0.949 49 H 0.061 0.939 50 H 0.265 0.735 51 H 0.077 0.923 52 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.290 20.647 3.040 21.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.162 4.162 3 C -0.179 4.179 4 C 0.007 3.993 5 N -0.186 5.186 6 C -0.093 4.093 7 C -0.055 4.055 8 H 0.117 0.883 9 C -0.183 4.183 10 C -0.029 4.029 11 O -0.291 6.291 12 C -0.020 4.020 13 N -0.125 5.125 14 N -0.112 5.112 15 C 0.012 3.988 16 N -0.171 5.171 17 C -0.079 4.079 18 C -0.159 4.159 19 C -0.156 4.156 20 C 0.006 3.994 21 H 0.062 0.938 22 C -0.556 4.556 23 H 0.089 0.911 24 C -0.127 4.127 25 N -0.534 5.534 26 Si 0.704 3.296 27 H -0.200 1.200 28 H -0.216 1.216 29 H -0.185 1.185 30 C -0.051 4.051 31 H 0.129 0.871 32 H 0.127 0.873 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.117 0.883 37 H 0.128 0.872 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.111 0.889 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.113 0.887 44 H 0.071 0.929 45 H 0.086 0.914 46 H 0.080 0.920 47 H 0.087 0.913 48 H 0.069 0.931 49 H 0.079 0.921 50 H 0.075 0.925 51 H 0.095 0.905 52 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 6.997 20.257 1.297 21.471 hybrid contribution -1.338 -0.222 1.167 1.790 sum 5.659 20.036 2.464 20.965 Atomic orbital electron populations 1.24075 0.94932 1.03046 0.97262 1.21786 0.95713 0.95140 1.03552 1.21011 1.00609 0.94031 1.02228 1.21088 0.97238 0.97263 0.83711 1.47588 1.17558 1.38832 1.14584 1.24181 0.87363 1.02204 0.95594 1.20948 0.94186 0.93296 0.97032 0.88323 1.23004 0.92369 1.00479 1.02410 1.23431 0.95688 0.82681 1.01083 1.89122 1.20716 1.28759 1.90495 1.23514 0.84031 0.94561 0.99897 1.74086 1.19950 1.11302 1.07116 1.74553 0.99148 1.15151 1.22393 1.23488 0.95672 0.95427 0.84185 1.59326 0.96768 1.07456 1.53591 1.22640 0.89641 0.95097 1.00559 1.21717 0.94548 0.97830 1.01793 1.21988 1.01095 0.95081 0.97391 1.19117 0.88640 0.93402 0.98286 0.93811 1.20823 1.40600 0.93641 1.00527 0.91057 1.25011 0.95090 0.95488 0.97069 1.69892 1.45319 1.01701 1.36484 0.86882 0.79833 0.78097 0.84837 1.19967 1.21641 1.18495 1.22560 1.02817 0.88854 0.90903 0.87068 0.87290 0.91300 0.91059 0.91561 0.88306 0.87249 0.89999 0.89425 0.88857 0.91416 0.90640 0.88725 0.92866 0.91366 0.92002 0.91336 0.93067 0.92075 0.92469 0.90454 0.95015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 12.19 29.02 0.35 -0.99 16 2 C -0.16 -1.47 5.50 -101.06 -0.56 -2.02 16 3 C -0.12 -0.91 8.68 36.01 0.31 -0.59 16 4 C 0.13 1.42 5.09 -5.19 -0.03 1.39 16 5 N -0.49 -6.74 2.79 -115.36 -0.32 -7.06 16 6 C 0.17 2.34 5.78 -154.02 -0.89 1.45 16 7 C -0.03 -0.33 2.52 -90.21 -0.23 -0.55 16 8 H 0.10 0.79 5.70 -51.93 -0.30 0.50 16 9 C -0.14 -1.31 6.73 -25.16 -0.17 -1.48 16 10 C 0.05 0.42 7.63 37.94 0.29 0.71 16 11 O -0.37 -3.92 11.65 -35.23 -0.41 -4.33 16 12 C 0.06 0.56 6.61 37.94 0.25 0.81 16 13 N -0.28 -4.78 11.90 32.99 0.39 -4.38 16 14 N -0.27 -5.20 12.23 30.31 0.37 -4.83 16 15 C 0.37 6.34 6.64 -318.88 -2.12 4.22 16 16 N -0.45 -7.93 4.68 -174.55 -0.82 -8.75 16 17 C 0.05 0.70 4.96 -3.83 -0.02 0.68 16 18 C -0.12 -1.88 6.09 -26.65 -0.16 -2.04 16 19 C -0.12 -2.21 5.11 -26.61 -0.14 -2.34 16 20 C 0.03 0.55 1.84 -91.69 -0.17 0.38 16 21 H 0.04 1.02 5.77 -51.93 -0.30 0.72 16 22 C -0.52 -13.56 8.87 -34.44 -0.31 -13.86 16 23 H 0.07 2.02 8.06 -52.49 -0.42 1.60 16 24 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 25 N -0.90 -26.39 13.96 55.43 0.77 -25.61 16 26 Si 0.88 20.92 26.38 -169.99 -4.48 16.43 16 27 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 28 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 29 H -0.26 -5.85 6.21 56.52 0.35 -5.50 16 30 C 0.07 1.44 4.47 -3.83 -0.02 1.43 16 31 H 0.11 1.03 6.37 -52.49 -0.33 0.70 16 32 H 0.11 0.78 7.85 -52.49 -0.41 0.37 16 33 H 0.07 0.44 7.80 -51.93 -0.40 0.04 16 34 H 0.07 0.43 7.66 -51.93 -0.40 0.04 16 35 H 0.07 0.55 4.76 -51.93 -0.25 0.31 16 36 H 0.10 0.89 7.67 -51.93 -0.40 0.49 16 37 H 0.11 1.34 4.19 -51.92 -0.22 1.12 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.09 0.94 7.73 -51.93 -0.40 0.54 16 40 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.08 0.85 7.64 -51.93 -0.40 0.45 16 43 H 0.09 0.74 6.91 -51.93 -0.36 0.39 16 44 H 0.05 0.70 1.92 -51.93 -0.10 0.60 16 45 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 46 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 47 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 48 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 49 H 0.06 1.22 6.86 -51.93 -0.36 0.86 16 50 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 51 H 0.08 1.64 8.10 -51.93 -0.42 1.22 16 52 H 0.03 0.58 5.67 -51.93 -0.29 0.28 16 LS Contribution 384.14 15.07 5.79 5.79 Total: -1.00 -31.52 384.14 -10.30 -41.81 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -7.90 Total: 1.76 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: -3.69 Total: -10.82 kcal Atomic # 7 Polarization: -51.04 SS G_CDS: 0.40 Total: -50.64 kcal Atomic # 8 Polarization: -3.92 SS G_CDS: -0.41 Total: -4.33 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.48 Total: 16.43 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.52 -10.30 -41.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829129367.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.944 kcal (2) G-P(sol) polarization free energy of solvation -31.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds